PDB Short entry for 1VWG HEADER COMPLEX (BIOTIN-BINDING PROTEIN/PEPTIDE)03-MAR-97 1VWG TITLE STREPTAVIDIN COMPLEXED WITH THE HEAD-TO-TAIL DISULFIDE-BONDED PEPTIDE TITLE 2 DIMER OF CYCLO-AC-[CHPQGPPC]-NH2, PH 2.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE LIGAND CONTAINING HPQ; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 MOL_ID: 2 KEYWDS COMPLEX (BIOTIN-BINDING PROTEIN-PEPTIDE), CYCLIC PEPTIDE DISCOVERED KEYWDS 2 BY PHAGE DISPLAY, COMPLEX (BIOTIN-BINDING PROTEIN-PEPTIDE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.A.KATZ,R.T.CASS REVDAT 3 16-NOV-11 1VWG 1 VERSN HETATM REVDAT 2 24-FEB-09 1VWG 1 VERSN REVDAT 1 18-MAR-98 1VWG 0 JRNL AUTH B.A.KATZ,R.T.CASS JRNL TITL IN CRYSTALS OF COMPLEXES OF STREPTAVIDIN WITH PEPTIDE JRNL TITL 2 LIGANDS CONTAINING THE HPQ SEQUENCE THE PKA OF THE PEPTIDE JRNL TITL 3 HISTIDINE IS LESS THAN 3.0. JRNL REF J.BIOL.CHEM. V. 272 13220 1997 JRNL REFN ISSN 0021-9258 JRNL PMID 9148939 JRNL DOI 10.1074/JBC.272.20.13220 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.A.KATZ,B.LIU,R.T.CASS REMARK 1 TITL STRUCTURE-BASED DESIGN TOOLS: STRUCTURAL AND THERMODYNAMIC REMARK 1 TITL 2 COMPARISON WITH BIOTIN OF A SMALL MOLECULE THAT BINDS REMARK 1 TITL 3 STREPTAVIDIN WITH MICROMOLAR AFFINITY REMARK 1 REF J.AM.CHEM.SOC. V. 118 7914 1996 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.A.KATZ REMARK 1 TITL PREPARATION OF A PROTEIN-DIMERIZING LIGAND BY TOPOCHEMISTRY REMARK 1 TITL 2 AND STRUCTURE-BASED DESIGN REMARK 1 REF J.AM.CHEM.SOC. V. 118 2535 1996 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.A.KATZ,R.T.CASS,B.LIU,R.ARZE,N.COLLINS REMARK 1 TITL TOPOCHEMICAL CATALYSIS ACHIEVED BY STRUCTURE-BASED LIGAND REMARK 1 TITL 2 DESIGN REMARK 1 REF J.BIOL.CHEM. V. 270 31210 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.A.KATZ,R.M.STROUD,N.COLLINS,B.LIU,R.ARZE REMARK 1 TITL TOPOCHEMISTRY FOR PREPARING LIGANDS THAT DIMERIZE RECEPTORS REMARK 1 REF CHEM.BIOL. V. 2 591 1995 REMARK 1 REFN ISSN 1074-5521 REMARK 1 REFERENCE 5 REMARK 1 AUTH B.A.KATZ REMARK 1 TITL BINDING TO PROTEIN TARGETS OF PEPTIDIC LEADS DISCOVERED BY REMARK 1 TITL 2 PHAGE DISPLAY: CRYSTAL STRUCTURES OF STREPTAVIDIN-BOUND REMARK 1 TITL 3 LINEAR AND CYCLIC PEPTIDE LIGANDS CONTAINING THE HPQ REMARK 1 TITL 4 SEQUENCE REMARK 1 REF BIOCHEMISTRY V. 34 15421 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 6 REMARK 1 AUTH B.A.KATZ,C.R.JOHNSON,R.T.CASS REMARK 1 TITL STRUCTURE-BASED DESIGN OF HIGH AFFINITY STREPTAVIDIN BINDING REMARK 1 TITL 2 CYCLIC PEPTIDE LIGANDS CONTAINING THIOETHER CROSS-LINKS REMARK 1 REF J.AM.CHEM.SOC. V. 117 8541 1995 REMARK 1 REFN ISSN 0002-7863 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.900 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 72.2 REMARK 3 NUMBER OF REFLECTIONS : 18850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 4.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CLEC25_PARMALLH3X.PRO REMARK 3 PARAMETER FILE 2 : PARAM11_UCSF.WAT REMARK 3 PARAMETER FILE 3 : PARAM19XB2_KBCO.PRO REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : CLEC25_TOPALLH6X_BAK.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 3 : TOPH19XB2_KBCO.PRO REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FOLLOWING ATOMS HAD WEAK DENSITY AND OCCUPANCIES WERE REMARK 3 REFINED: 13, 14, 15, MAIN CHAIN OF GLN 24, SIDE CHAIN OF REMARK 3 GLN 24, SIDE CHAIN OF LEU 25, GLY 26, ALA 35, (CB, HB1, REMARK 3 HB2 OF ASP 36), (CG, OD1, AND OD2 OF ASP 36), ALA 46, VAL REMARK 3 47, GLY 48, ASN 49, ALA 50, SIDE CHAIN OF GLU 51, TERMINUS REMARK 3 OF ARG 53, SER 63, PRO 64, ALA 65, THR 66, ASP 67, GLY 68, REMARK 3 GLY 99, ALA 100, (N AND HN OF GLU 101), (CG, HG1, HG2, CD, REMARK 3 OE1, OE2 OF GLU 101), TERMINUS OF ARG 103, (N, HN, CA, HA, REMARK 3 CB, HB1, HB2, CG, HG1, HG2 OF GLN 116), (CD, OE1, OE2 OF REMARK 3 GLN 116), ALA 117, (CG, HG1, HG2, CD, HD1, HD2 OF LYS 121), REMARK 3 (CE, HE1, HE2, NZ, HZ1, HZ2, HZ3 OF LYS 121), (ACE P 0 AND REMARK 3 CYS P 1), PRO P 7, (CYS P 8 AND NH2 P 9). REMARK 4 REMARK 4 1VWG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 2.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX (MSC) REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25029 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SYNTHETIC MOTHER LIQUOR = 75 % REMARK 280 SATURATED AMMONIUM SULFATE, 25 % 1.0 M POTASSIUM ACETATE ADJUSTED REMARK 280 TO PH 2.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 29.04000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.37750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.04000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.13250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.13250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.37750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 29.04000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.75500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 29.04000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.75500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 29.04000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 130.13250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 43.37750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 29.04000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 43.37750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 130.13250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 29.04000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 29.04000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 445 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 134 REMARK 465 PRO B 135 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 VAL B 47 REMARK 475 GLY B 48 REMARK 475 THR B 66 REMARK 475 CYS P 8 REMARK 475 NH2 P 9 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 101 CG CD OE1 OE2 REMARK 480 LYS B 121 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 538 O HOH B 548 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 305 O HOH B 305 15555 0.49 REMARK 500 O HOH B 313 O HOH B 313 10655 1.21 REMARK 500 O HOH B 163 O HOH B 163 10555 1.61 REMARK 500 O ALA B 15 O HOH B 446 10655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 127 NE2 HIS B 127 CD2 -0.068 REMARK 500 HIS P 2 NE2 HIS P 2 CD2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP B 21 CG - CD1 - NE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP B 21 CD1 - NE1 - CE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP B 21 NE1 - CE2 - CZ2 ANGL. DEV. = 8.5 DEGREES REMARK 500 PHE B 29 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR B 43 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR B 43 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR B 60 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP B 75 CG - CD1 - NE1 ANGL. DEV. = -7.9 DEGREES REMARK 500 TRP B 75 CD1 - NE1 - CE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 TRP B 75 NE1 - CE2 - CZ2 ANGL. DEV. = 8.0 DEGREES REMARK 500 TRP B 79 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP B 79 CD1 - NE1 - CE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 TRP B 79 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP B 92 CG - CD1 - NE1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TRP B 92 CD1 - NE1 - CE2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP B 108 CG - CD1 - NE1 ANGL. DEV. = -8.4 DEGREES REMARK 500 TRP B 108 CD1 - NE1 - CE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 TRP B 108 NE1 - CE2 - CZ2 ANGL. DEV. = 8.0 DEGREES REMARK 500 TRP B 120 CG - CD1 - NE1 ANGL. DEV. = -7.3 DEGREES REMARK 500 TRP B 120 CD1 - NE1 - CE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 TRP B 120 NE1 - CE2 - CZ2 ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 14 -76.59 38.87 REMARK 500 ASP B 36 45.06 -99.48 REMARK 500 ALA B 46 -176.92 -179.61 REMARK 500 VAL B 47 -59.74 75.91 REMARK 500 GLU B 101 76.21 -115.88 REMARK 500 PRO P 3 -14.94 -45.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 53 0.14 SIDE_CHAIN REMARK 500 ARG B 103 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 160 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH B 163 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH B 192 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH B 233 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH B 234 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B 244 DISTANCE = 16.50 ANGSTROMS REMARK 525 HOH B 246 DISTANCE = 10.38 ANGSTROMS REMARK 525 HOH B 252 DISTANCE = 22.08 ANGSTROMS REMARK 525 HOH B 255 DISTANCE = 9.01 ANGSTROMS REMARK 525 HOH B 269 DISTANCE = 19.68 ANGSTROMS REMARK 525 HOH B 278 DISTANCE = 21.70 ANGSTROMS REMARK 525 HOH B 293 DISTANCE = 13.39 ANGSTROMS REMARK 525 HOH B 305 DISTANCE = 19.03 ANGSTROMS REMARK 525 HOH B 400 DISTANCE = 25.64 ANGSTROMS REMARK 525 HOH B 416 DISTANCE = 13.52 ANGSTROMS REMARK 525 HOH B 427 DISTANCE = 13.35 ANGSTROMS REMARK 525 HOH B 438 DISTANCE = 10.73 ANGSTROMS REMARK 525 HOH B 472 DISTANCE = 5.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 P 9 DBREF 1VWG B 13 135 UNP P22629 SAV_STRAV 37 159 DBREF 1VWG P 0 9 PDB 1VWG 1VWG 0 9 SEQRES 1 B 123 ALA GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU SEQRES 2 B 123 GLY SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA SEQRES 3 B 123 LEU THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SEQRES 4 B 123 SER ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO SEQRES 5 B 123 ALA THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL SEQRES 6 B 123 ALA TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR SEQRES 7 B 123 THR TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG SEQRES 8 B 123 ILE ASN THR GLN TRP LEU LEU THR SER GLY THR THR GLU SEQRES 9 B 123 ALA ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR SEQRES 10 B 123 PHE THR LYS VAL LYS PRO SEQRES 1 P 10 ACE CYS HIS PRO GLN GLY PRO PRO CYS NH2 HET ACE P 0 6 HET NH2 P 9 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 2 ACE C2 H4 O FORMUL 2 NH2 H2 N FORMUL 3 HOH *56(H2 O) HELIX 1 1 ALA B 50 SER B 52 5 3 HELIX 2 2 GLU B 116 LYS B 121 5 6 SHEET 1 A 8 GLY B 19 TYR B 22 0 SHEET 2 A 8 THR B 28 ALA B 33 -1 N VAL B 31 O GLY B 19 SHEET 3 A 8 ALA B 38 GLU B 44 -1 N GLU B 44 O THR B 28 SHEET 4 A 8 ARG B 53 TYR B 60 -1 N GLY B 58 O LEU B 39 SHEET 5 A 8 THR B 71 ALA B 78 -1 N THR B 76 O THR B 57 SHEET 6 A 8 SER B 88 VAL B 97 -1 N TYR B 96 O THR B 71 SHEET 7 A 8 ARG B 103 SER B 112 -1 N THR B 111 O ALA B 89 SHEET 8 A 8 THR B 123 THR B 131 -1 N PHE B 130 O ILE B 104 LINK C ACE P 0 N CYS P 1 1555 1555 1.31 LINK N NH2 P 9 C CYS P 8 1555 1555 1.29 CISPEP 1 PRO P 6 PRO P 7 0 -23.56 SITE 1 AC2 3 SER B 45 CYS P 8 HOH B 293 CRYST1 58.080 58.080 173.510 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005763 0.00000