PDB Short entry for 1W2E HEADER BACTERIAL CELL DIVISION 01-JUL-04 1W2E TITLE THE CRYSTAL STRUCTURE OF THE BACTERIAL CELL DIVISION PROTEIN ZAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZAPA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN PA5227; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PA01-LAC; SOURCE 5 ATCC: 47085D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS17 KEYWDS BACTERIAL CELL DIVISION, FTSZ MODULATOR EXPDTA X-RAY DIFFRACTION AUTHOR H.H.LOW,M.C.MONCRIEFFE,J.LOWE REVDAT 4 24-JAN-18 1W2E 1 SOURCE REVDAT 3 24-FEB-09 1W2E 1 VERSN REVDAT 2 05-AUG-04 1W2E 1 JRNL REVDAT 1 19-JUL-04 1W2E 0 JRNL AUTH H.H.LOW,M.C.MONCRIEFFE,J.LOWE JRNL TITL THE CRYSTAL STRUCTURE OF ZAPA AND ITS MODULATION OF FTSZ JRNL TITL 2 POLYMERISATION JRNL REF J.MOL.BIOL. V. 341 839 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15288790 JRNL DOI 10.1016/J.JMB.2004.05.031 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 5406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 280 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 609 REMARK 3 BIN R VALUE (WORKING SET) : 0.3293 REMARK 3 BIN FREE R VALUE : 0.3745 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.26700 REMARK 3 B22 (A**2) : -2.26700 REMARK 3 B33 (A**2) : 4.53500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.199 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 39.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 31.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.13000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.06500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.19500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 9.06500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.19500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.13000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.26000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 ASN A 97 REMARK 465 PRO A 98 REMARK 465 ALA A 99 REMARK 465 ASP A 100 REMARK 465 ALA A 101 REMARK 465 GLY A 102 REMARK 465 GLU A 103 REMARK 465 ALA A 104 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 98 REMARK 465 ALA B 99 REMARK 465 ASP B 100 REMARK 465 ALA B 101 REMARK 465 GLY B 102 REMARK 465 GLU B 103 REMARK 465 ALA B 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 96 CA C O CB REMARK 470 ASN B 97 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 -33.07 -37.68 REMARK 500 SER A 44 43.95 -81.17 REMARK 500 SER A 45 -70.82 -141.37 REMARK 500 LEU A 95 -172.60 169.04 REMARK 500 ASP B 22 -56.61 -4.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T3U RELATED DB: PDB REMARK 900 UNKNOWN CONSERVED BACTERIAL PROTEIN FROM PSEUDOMONASAERUGINOSA PAO1 DBREF 1W2E A 1 104 UNP Q9HTW3 Q9HTW3 1 104 DBREF 1W2E B 1 104 UNP Q9HTW3 Q9HTW3 1 104 SEQRES 1 A 104 MSE SER GLN SER ASN THR LEU THR VAL GLN ILE LEU ASP SEQRES 2 A 104 LYS GLU TYR CYS ILE ASN CYS PRO ASP ASP GLU ARG ALA SEQRES 3 A 104 ASN LEU GLU SER ALA ALA ARG TYR LEU ASP GLY LYS MSE SEQRES 4 A 104 ARG GLU ILE ARG SER SER GLY LYS VAL ILE GLY ALA ASP SEQRES 5 A 104 ARG VAL ALA VAL MSE ALA ALA LEU ASN ILE THR HIS ASP SEQRES 6 A 104 LEU LEU HIS ARG LYS GLU ARG LEU ASP GLN GLU SER SER SEQRES 7 A 104 SER THR ARG GLU ARG VAL ARG GLU LEU LEU ASP ARG VAL SEQRES 8 A 104 ASP ARG ALA LEU ALA ASN PRO ALA ASP ALA GLY GLU ALA SEQRES 1 B 104 MSE SER GLN SER ASN THR LEU THR VAL GLN ILE LEU ASP SEQRES 2 B 104 LYS GLU TYR CYS ILE ASN CYS PRO ASP ASP GLU ARG ALA SEQRES 3 B 104 ASN LEU GLU SER ALA ALA ARG TYR LEU ASP GLY LYS MSE SEQRES 4 B 104 ARG GLU ILE ARG SER SER GLY LYS VAL ILE GLY ALA ASP SEQRES 5 B 104 ARG VAL ALA VAL MSE ALA ALA LEU ASN ILE THR HIS ASP SEQRES 6 B 104 LEU LEU HIS ARG LYS GLU ARG LEU ASP GLN GLU SER SER SEQRES 7 B 104 SER THR ARG GLU ARG VAL ARG GLU LEU LEU ASP ARG VAL SEQRES 8 B 104 ASP ARG ALA LEU ALA ASN PRO ALA ASP ALA GLY GLU ALA MODRES 1W2E MSE A 39 MET SELENOMETHIONINE MODRES 1W2E MSE A 57 MET SELENOMETHIONINE MODRES 1W2E MSE B 39 MET SELENOMETHIONINE MODRES 1W2E MSE B 57 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 57 8 HET MSE B 39 8 HET MSE B 57 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *12(H2 O) HELIX 1 1 PRO A 21 ASP A 23 5 3 HELIX 2 2 GLU A 24 SER A 44 1 21 HELIX 3 3 GLY A 50 ALA A 94 1 45 HELIX 4 4 PRO B 21 ASP B 23 5 3 HELIX 5 5 GLU B 24 GLY B 46 1 23 HELIX 6 6 GLY B 50 ALA B 96 1 47 SHEET 1 AA 2 THR A 6 ILE A 11 0 SHEET 2 AA 2 LYS A 14 ASN A 19 -1 O LYS A 14 N ILE A 11 SHEET 1 BA 2 LEU B 7 GLN B 10 0 SHEET 2 BA 2 GLU B 15 ILE B 18 -1 O TYR B 16 N VAL B 9 LINK C LYS A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ARG A 40 1555 1555 1.33 LINK C VAL A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ALA A 58 1555 1555 1.33 LINK C LYS B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N ARG B 40 1555 1555 1.33 LINK C VAL B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ALA B 58 1555 1555 1.33 CRYST1 105.960 105.960 36.260 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027579 0.00000