PDB Short entry for 1W4M HEADER SIGNAL TRANSDUCTION 26-JUL-04 1W4M TITLE STRUCTURE OF THE HUMAN PLECKSTRIN DEP DOMAIN BY TITLE 2 MULTIDIMENSIONAL NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DEP DOMAIN, RESIDUES 121-223; COMPND 5 SYNONYM: HUMAN PLECKSTRIN DEP DOMAIN, PLATELET P47 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D, PETM30 KEYWDS SIGNAL TRANSDUCTION, DEP DOMAIN, HUMAN PLECKSTRIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.CIVERA,B.SIMON,G.STIER,M.SATTLER,M.J.MACIAS REVDAT 3 24-FEB-09 1W4M 1 VERSN REVDAT 2 04-MAY-05 1W4M 1 JRNL REVDAT 1 15-DEC-04 1W4M 0 JRNL AUTH C.CIVERA,B.SIMON,G.STIER,M.SATTLER,M.J.MACIAS JRNL TITL STRUCTURE AND DYNAMICS OF THE HUMAN PLECKSTRIN DEP JRNL TITL 2 DOMAIN: DISTINCT MOLECULAR FEATURES OF A NOVEL DEP JRNL TITL 3 DOMAIN SUBFAMILY JRNL REF PROTEINS: STRUCT.,FUNCT., V. 58 354 2005 JRNL REF 2 GENET. JRNL REFN ISSN 0887-3585 JRNL PMID 15573383 JRNL DOI 10.1002/PROT.20320 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W4M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-04. REMARK 100 THE PDBE ID CODE IS EBI-20067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 30MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 20MM PHOSPHATE BUFFER, REMARK 210 30MM NACL, 3MM REMARK 210 DITHIOTHREITOL (DTT), 0. REMARK 210 03% (W/V) NAN3 IN 90% H2O REMARK 210 / 10% D2O OR 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D HOMONUCLEAR TOCSY AND REMARK 210 NOESY , 1H-15N-HSQC, HNCA, REMARK 210 CBCANH, CBCACONH, HNCO, REMARK 210 HCCCONH, CCONH, HCCH-TOCSY, REMARK 210 HBHACONH, HBCBCCDHD, REMARK 210 HBCBCCDCEHE3D , 13C-EDITED REMARK 210 TOCSY, 1H-15N-HNHA , IPAP REMARK 210 1H-15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 100 REMARK 465 ASP A 101 REMARK 465 SER A 102 REMARK 465 GLY A 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 15 -169.43 -66.91 REMARK 500 1 THR A 16 -87.37 -82.64 REMARK 500 1 ILE A 20 -176.13 -65.00 REMARK 500 1 GLU A 22 103.32 -57.52 REMARK 500 1 LYS A 27 -86.93 -128.50 REMARK 500 1 ARG A 52 -57.05 -123.89 REMARK 500 1 ASP A 91 40.62 -86.11 REMARK 500 2 ASP A 15 -173.79 -60.77 REMARK 500 2 THR A 16 -86.83 -85.52 REMARK 500 2 GLU A 22 105.16 -54.79 REMARK 500 2 LYS A 27 -92.71 -88.46 REMARK 500 2 ASP A 28 -67.45 -120.17 REMARK 500 2 ARG A 52 -54.92 -125.92 REMARK 500 2 PRO A 72 105.81 -59.94 REMARK 500 2 ALA A 85 34.96 -90.44 REMARK 500 2 ASP A 91 43.10 -85.32 REMARK 500 3 ASP A 15 -174.76 -63.56 REMARK 500 3 THR A 16 -85.05 -85.61 REMARK 500 3 ILE A 20 -179.19 -62.66 REMARK 500 3 GLU A 22 101.19 -50.92 REMARK 500 3 LYS A 27 -82.34 -109.57 REMARK 500 3 ASN A 48 -157.97 -115.53 REMARK 500 3 ARG A 52 -55.83 -124.82 REMARK 500 3 ASP A 91 37.16 -97.74 REMARK 500 4 ASP A 15 -178.34 -63.26 REMARK 500 4 THR A 16 -82.60 -85.06 REMARK 500 4 ILE A 20 -177.40 -65.96 REMARK 500 4 GLU A 22 105.13 -56.14 REMARK 500 4 LYS A 27 -128.20 -103.78 REMARK 500 4 ASP A 28 -72.01 -84.51 REMARK 500 4 ASN A 48 -162.49 -113.44 REMARK 500 4 ARG A 52 -55.00 -129.53 REMARK 500 4 ALA A 85 40.01 -92.75 REMARK 500 4 PRO A 88 -77.96 -67.25 REMARK 500 4 ASP A 91 36.92 -90.15 REMARK 500 5 ASP A 15 -171.20 -66.63 REMARK 500 5 THR A 16 -86.72 -83.79 REMARK 500 5 ILE A 20 -169.14 -66.52 REMARK 500 5 LYS A 21 -155.22 -79.45 REMARK 500 5 GLU A 22 93.99 -168.94 REMARK 500 5 LYS A 27 -165.00 -127.35 REMARK 500 5 ASN A 48 -163.03 -104.31 REMARK 500 5 SER A 50 -70.48 -70.37 REMARK 500 5 ARG A 52 -56.84 -125.24 REMARK 500 5 PRO A 72 150.80 -48.08 REMARK 500 5 ALA A 85 55.32 -111.17 REMARK 500 5 PRO A 88 42.43 -96.43 REMARK 500 5 ASP A 91 39.51 -86.72 REMARK 500 6 ASP A 15 -170.92 -66.69 REMARK 500 6 THR A 16 -85.56 -88.71 REMARK 500 6 ILE A 20 -169.07 -66.82 REMARK 500 6 LYS A 21 -153.83 -80.41 REMARK 500 6 GLU A 22 82.53 -169.97 REMARK 500 6 LYS A 27 -88.57 -78.48 REMARK 500 6 ASP A 28 -54.10 -120.24 REMARK 500 6 ARG A 52 -55.01 -122.57 REMARK 500 7 ASP A 15 -174.84 -64.35 REMARK 500 7 THR A 16 -87.63 -84.03 REMARK 500 7 ILE A 20 34.46 -78.14 REMARK 500 7 LYS A 21 95.45 49.54 REMARK 500 7 LYS A 27 -143.89 -77.25 REMARK 500 7 ASN A 48 -157.71 -94.88 REMARK 500 7 ARG A 52 -54.61 -129.90 REMARK 500 7 ASP A 91 33.55 -87.34 REMARK 500 8 ASP A 15 -173.25 -61.78 REMARK 500 8 THR A 16 -84.56 -87.94 REMARK 500 8 ILE A 20 -177.71 -62.37 REMARK 500 8 GLU A 22 107.72 -50.26 REMARK 500 8 LYS A 27 -85.31 -118.82 REMARK 500 8 ASP A 28 -70.53 -109.09 REMARK 500 8 ASN A 48 -169.36 -100.49 REMARK 500 8 ARG A 52 -56.78 -126.36 REMARK 500 9 ASP A 15 -170.69 -66.56 REMARK 500 9 THR A 16 -87.25 -89.97 REMARK 500 9 ILE A 20 -175.24 -69.84 REMARK 500 9 GLU A 22 104.93 -55.03 REMARK 500 9 LYS A 27 -81.90 -95.04 REMARK 500 9 ASP A 28 -62.74 -120.09 REMARK 500 9 ARG A 52 -55.36 -122.12 REMARK 500 10 ASN A 24 98.53 -63.41 REMARK 500 10 LYS A 27 -87.53 -113.29 REMARK 500 10 ASP A 28 -73.41 -112.01 REMARK 500 10 ASN A 33 98.18 -68.14 REMARK 500 10 HIS A 34 75.99 60.03 REMARK 500 10 ARG A 52 -55.87 -120.59 REMARK 500 10 ALA A 85 30.06 -81.86 REMARK 500 10 ASP A 91 30.71 -86.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PLS RELATED DB: PDB REMARK 900 PLECKSTRIN (N-TERMINAL PLECKSTRIN HOMOLOGY REMARK 900 DOMAIN) MUTANT WITH LEU GLU (HIS)6 ADDED REMARK 900 TO THE C TERMINUS (INS(G105-LEHHHHHH)) REMARK 900 (NMR, 25 STRUCTURES) DBREF 1W4M A 1 103 UNP P08567 PLEK_HUMAN 121 223 SEQRES 1 A 103 PRO GLU THR ILE ASP LEU GLY ALA LEU TYR LEU SER MET SEQRES 2 A 103 LYS ASP THR GLU LYS GLY ILE LYS GLU LEU ASN LEU GLU SEQRES 3 A 103 LYS ASP LYS LYS ILE PHE ASN HIS CYS PHE THR GLY ASN SEQRES 4 A 103 CYS VAL ILE ASP TRP LEU VAL SER ASN GLN SER VAL ARG SEQRES 5 A 103 ASN ARG GLN GLU GLY LEU MET ILE ALA SER SER LEU LEU SEQRES 6 A 103 ASN GLU GLY TYR LEU GLN PRO ALA GLY ASP MET SER LYS SEQRES 7 A 103 SER ALA VAL ASP GLY THR ALA GLU ASN PRO PHE LEU ASP SEQRES 8 A 103 ASN PRO ASP ALA PHE TYR TYR PHE PRO ASP SER GLY HELIX 1 1 ASP A 5 LYS A 14 1 10 HELIX 2 2 GLY A 38 ASN A 48 1 11 HELIX 3 3 ASN A 53 GLY A 68 1 16 HELIX 4 4 GLY A 74 VAL A 81 1 8 SHEET 1 AA 2 LEU A 25 GLU A 26 0 SHEET 2 AA 2 ILE A 31 PHE A 32 -1 O PHE A 32 N LEU A 25 SHEET 1 AB 3 CYS A 35 THR A 37 0 SHEET 2 AB 3 PHE A 96 TYR A 98 -1 O TYR A 97 N PHE A 36 SHEET 3 AB 3 GLN A 71 ALA A 73 -1 O GLN A 71 N TYR A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000