PDB Short entry for 1WFY HEADER SIGNALING PROTEIN 27-MAY-04 1WFY TITLE SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF MOUSE RGS14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF G-PROTEIN SIGNALING 14; RAP1/RAP2 INTERACTING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RAF-LIKE RAS-BINDING DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 0610041O18; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030120-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS REGULATORS OF G-PROTEIN SIGNALING, RAS FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WFY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WFY 1 VERSN REVDAT 1 27-NOV-04 1WFY 0 JRNL AUTH T.NAKANISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF MOUSE RGS14 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WFY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023537. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.18MM RBD U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.870, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 44 H LEU A 48 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 119.59 64.58 REMARK 500 1 LEU A 26 -153.37 -92.49 REMARK 500 1 GLU A 27 74.82 -150.83 REMARK 500 1 ARG A 28 149.20 179.08 REMARK 500 1 LYS A 38 166.89 -44.53 REMARK 500 1 HIS A 61 119.55 -176.29 REMARK 500 1 ARG A 62 161.66 -49.14 REMARK 500 1 ALA A 79 70.35 -116.30 REMARK 500 1 SER A 80 -67.41 -161.07 REMARK 500 1 ASP A 90 125.95 169.03 REMARK 500 1 ALA A 96 170.62 61.04 REMARK 500 1 ARG A 97 108.67 -162.24 REMARK 500 2 SER A 2 168.04 178.65 REMARK 500 2 SER A 3 153.06 64.68 REMARK 500 2 GLU A 10 78.02 176.23 REMARK 500 2 LEU A 13 63.17 -169.49 REMARK 500 2 GLU A 14 93.02 61.91 REMARK 500 2 LEU A 23 73.44 -68.70 REMARK 500 2 GLU A 27 49.54 82.69 REMARK 500 2 LYS A 35 151.08 -49.91 REMARK 500 2 LYS A 38 166.18 -44.17 REMARK 500 2 ASP A 56 37.81 -96.16 REMARK 500 2 GLN A 57 -54.69 -137.28 REMARK 500 2 HIS A 61 139.90 -176.03 REMARK 500 2 GLU A 65 -97.27 -107.49 REMARK 500 2 LYS A 66 -39.66 -178.36 REMARK 500 2 VAL A 78 39.82 -94.98 REMARK 500 2 ALA A 79 71.27 -119.58 REMARK 500 2 SER A 80 -66.44 -176.02 REMARK 500 2 THR A 87 157.11 -48.50 REMARK 500 2 ASP A 90 126.66 160.49 REMARK 500 2 ALA A 91 -59.41 -151.20 REMARK 500 2 LYS A 92 99.32 55.55 REMARK 500 2 GLU A 95 75.18 -162.82 REMARK 500 2 ARG A 97 111.56 -171.84 REMARK 500 3 SER A 3 166.20 179.54 REMARK 500 3 SER A 5 115.47 -163.15 REMARK 500 3 GLU A 10 72.69 176.43 REMARK 500 3 VAL A 11 -171.56 47.06 REMARK 500 3 LEU A 13 -57.23 -158.37 REMARK 500 3 GLU A 14 109.81 -179.13 REMARK 500 3 ASN A 15 115.53 -160.47 REMARK 500 3 LEU A 26 -155.49 -96.83 REMARK 500 3 GLU A 27 67.15 -150.71 REMARK 500 3 ARG A 28 142.29 -170.58 REMARK 500 3 LYS A 38 168.81 -45.27 REMARK 500 3 LEU A 53 -163.83 -101.69 REMARK 500 3 ASP A 56 37.91 -98.57 REMARK 500 3 GLN A 57 -55.86 -139.54 REMARK 500 3 HIS A 61 115.91 -169.17 REMARK 500 REMARK 500 THIS ENTRY HAS 414 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007006680.1 RELATED DB: TARGETDB DBREF 1WFY A 8 98 UNP P97492 RGS14_MOUSE 366 456 SEQADV 1WFY GLY A 1 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 2 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 3 UNP P97492 CLONING ARTIFACT SEQADV 1WFY GLY A 4 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 5 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 6 UNP P97492 CLONING ARTIFACT SEQADV 1WFY GLY A 7 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 99 UNP P97492 CLONING ARTIFACT SEQADV 1WFY GLY A 100 UNP P97492 CLONING ARTIFACT SEQADV 1WFY PRO A 101 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 102 UNP P97492 CLONING ARTIFACT SEQADV 1WFY SER A 103 UNP P97492 CLONING ARTIFACT SEQADV 1WFY GLY A 104 UNP P97492 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY ASP GLN GLU VAL ARG LEU SEQRES 2 A 104 GLU ASN ARG ILE THR PHE GLN LEU GLU LEU VAL GLY LEU SEQRES 3 A 104 GLU ARG VAL VAL ARG ILE SER ALA LYS PRO THR LYS ARG SEQRES 4 A 104 LEU GLN GLU ALA LEU GLN PRO ILE LEU ALA LYS HIS GLY SEQRES 5 A 104 LEU SER LEU ASP GLN VAL VAL LEU HIS ARG PRO GLY GLU SEQRES 6 A 104 LYS GLN PRO MET ASP LEU GLU ASN PRO VAL SER SER VAL SEQRES 7 A 104 ALA SER GLN THR LEU VAL LEU ASP THR PRO PRO ASP ALA SEQRES 8 A 104 LYS MET SER GLU ALA ARG SER SER GLY PRO SER SER GLY HELIX 1 1 LEU A 40 ALA A 49 1 10 HELIX 2 2 VAL A 75 VAL A 78 5 4 SHEET 1 A 4 VAL A 29 ALA A 34 0 SHEET 2 A 4 ILE A 17 LEU A 23 -1 N PHE A 19 O ILE A 32 SHEET 3 A 4 LEU A 83 ASP A 86 1 O LEU A 85 N GLU A 22 SHEET 4 A 4 VAL A 59 LEU A 60 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000