PDB Short entry for 1WHW HEADER RNA BINDING PROTEIN 28-MAY-04 1WHW TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN FROM TITLE 2 HYPOTHETICAL PROTEIN BAB23448 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1200009A02; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BAB23448; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200009A02; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040202-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WHW 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WHW 1 VERSN REVDAT 1 28-NOV-04 1WHW 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN FROM JRNL TITL 2 HYPOTHETICAL PROTEIN BAB23448 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.0.4, CYANA 2.0 REMARK 3 AUTHORS : JOHNSON (NMRVIEW), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WHW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023595. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM PROTEIN U-15N, 13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, NMRPIPE 2.3, KUJIRA REMARK 210 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 44 54.70 70.67 REMARK 500 1 GLU A 51 -35.70 -34.78 REMARK 500 1 LEU A 74 -61.91 -105.69 REMARK 500 1 ASP A 100 85.35 -54.27 REMARK 500 1 ILE A 116 100.02 -55.99 REMARK 500 1 GLU A 119 47.05 -85.93 REMARK 500 2 ASN A 44 51.93 70.07 REMARK 500 2 ASP A 100 103.12 -45.88 REMARK 500 2 MET A 108 99.22 -66.83 REMARK 500 2 ILE A 116 108.60 -35.11 REMARK 500 2 LYS A 117 59.39 -100.76 REMARK 500 2 PRO A 125 88.51 -69.78 REMARK 500 3 SER A 32 43.82 36.07 REMARK 500 3 ASN A 44 49.98 74.81 REMARK 500 3 ASP A 100 100.50 -45.73 REMARK 500 3 MET A 108 95.87 -68.83 REMARK 500 4 ASN A 44 47.26 71.98 REMARK 500 4 GLU A 66 143.87 -170.06 REMARK 500 4 ASP A 100 96.69 -44.25 REMARK 500 4 MET A 108 98.80 -63.90 REMARK 500 4 SER A 127 -45.13 -130.54 REMARK 500 5 SER A 59 -35.50 -35.54 REMARK 500 5 ASP A 100 82.62 -55.07 REMARK 500 6 ASN A 44 55.03 74.80 REMARK 500 6 GLU A 66 144.23 -170.14 REMARK 500 6 ASP A 100 96.35 -54.72 REMARK 500 6 ILE A 116 104.05 -39.69 REMARK 500 6 LYS A 117 93.89 -61.23 REMARK 500 7 SER A 35 83.07 -65.01 REMARK 500 7 ASN A 44 50.92 72.45 REMARK 500 7 GLU A 66 139.48 -170.56 REMARK 500 7 ASP A 100 92.55 -48.68 REMARK 500 7 MET A 108 94.87 -68.17 REMARK 500 7 GLN A 122 120.07 -172.86 REMARK 500 8 SER A 32 122.30 -173.03 REMARK 500 8 ASN A 44 52.90 72.68 REMARK 500 8 GLU A 51 -36.14 -34.57 REMARK 500 8 ASP A 53 -38.01 -35.06 REMARK 500 8 ASP A 100 88.24 -48.63 REMARK 500 8 ALA A 120 113.98 -163.97 REMARK 500 8 GLN A 122 87.64 -61.93 REMARK 500 9 SER A 59 -39.82 -35.52 REMARK 500 9 ASP A 100 95.19 -36.70 REMARK 500 9 SER A 121 44.40 -108.78 REMARK 500 10 ASN A 44 47.61 73.95 REMARK 500 10 ASP A 100 92.31 -48.73 REMARK 500 10 MET A 108 96.07 -63.23 REMARK 500 10 SER A 127 -55.22 -125.25 REMARK 500 11 SER A 32 41.90 -98.07 REMARK 500 11 SER A 37 -60.80 -107.07 REMARK 500 REMARK 500 THIS ENTRY HAS 97 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011210.2 RELATED DB: TARGETDB DBREF 1WHW A 37 122 GB 12835985 BAB23448 37 122 SEQADV 1WHW GLY A 30 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 31 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 32 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 33 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 34 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 35 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 36 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 123 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 124 GB 12835985 CLONING ARTIFACT SEQADV 1WHW PRO A 125 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 126 GB 12835985 CLONING ARTIFACT SEQADV 1WHW SER A 127 GB 12835985 CLONING ARTIFACT SEQADV 1WHW GLY A 128 GB 12835985 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY SER GLY ARG LEU PHE VAL SEQRES 2 A 99 ARG ASN LEU SER TYR THR SER SER GLU GLU ASP LEU GLU SEQRES 3 A 99 LYS LEU PHE SER ALA TYR GLY PRO LEU SER GLU LEU HIS SEQRES 4 A 99 TYR PRO ILE ASP SER LEU THR LYS LYS PRO LYS GLY PHE SEQRES 5 A 99 ALA PHE VAL THR PHE MET PHE PRO GLU HIS ALA VAL LYS SEQRES 6 A 99 ALA TYR ALA GLU VAL ASP GLY GLN VAL PHE GLN GLY ARG SEQRES 7 A 99 MET LEU HIS VAL LEU PRO SER THR ILE LYS LYS GLU ALA SEQRES 8 A 99 SER GLN SER GLY PRO SER SER GLY HELIX 1 1 SER A 50 ALA A 60 1 11 HELIX 2 2 PHE A 88 VAL A 99 1 12 SHEET 1 A 6 LEU A 64 HIS A 68 0 SHEET 2 A 6 PHE A 81 PHE A 86 -1 O THR A 85 N SER A 65 SHEET 3 A 6 GLY A 38 ARG A 43 -1 N GLY A 38 O PHE A 86 SHEET 4 A 6 HIS A 110 PRO A 113 -1 O LEU A 112 N PHE A 41 SHEET 5 A 6 MET A 108 LEU A 109 -1 SHEET 6 A 6 GLN A 102 VAL A 103 -1 N GLN A 102 O LEU A 109 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000