PDB Short entry for 1WI4 HEADER PROTEIN BINDING 28-MAY-04 1WI4 TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF SYNTAXIN BINDING PROTEIN 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTAXIN BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: SYNIP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2700027C09; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-50; SOURCE 8 OTHER_DETAILS: CELL FREE SYNTHESIS KEYWDS SYNTAXIN4-INTERACTING PROTEIN, SYNIP, STXBP4 PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ENDO,T.TOMIZAWA,T.KIGAWA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WI4 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WI4 1 VERSN REVDAT 1 07-JUN-05 1WI4 0 JRNL AUTH H.ENDO,T.TOMIZAWA,T.KIGAWA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF SYNTAXIN BINDING JRNL TITL 2 PROTEIN 4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.1 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WI4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023603. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20020405, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.899, REMARK 210 CYANA 2.0.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -178.98 49.41 REMARK 500 1 SER A 6 -70.12 70.55 REMARK 500 1 ASP A 11 104.22 -179.63 REMARK 500 1 GLU A 24 -53.26 -128.40 REMARK 500 1 LEU A 27 -70.86 -50.79 REMARK 500 1 GLU A 47 140.37 -172.60 REMARK 500 1 ARG A 59 -37.48 -38.23 REMARK 500 1 VAL A 67 -46.45 -140.18 REMARK 500 1 ASN A 70 -66.76 71.68 REMARK 500 1 LYS A 71 30.27 -179.03 REMARK 500 1 LEU A 91 143.91 65.14 REMARK 500 1 SER A 93 -158.75 -112.87 REMARK 500 1 PRO A 96 -172.29 -69.80 REMARK 500 1 SER A 104 120.77 -176.53 REMARK 500 1 SER A 108 158.99 58.29 REMARK 500 2 ASP A 11 124.13 -178.93 REMARK 500 2 ILE A 35 -30.50 -37.63 REMARK 500 2 ILE A 45 104.74 -43.76 REMARK 500 2 GLU A 47 128.44 179.92 REMARK 500 2 LYS A 61 160.64 178.01 REMARK 500 2 VAL A 67 -34.54 -139.32 REMARK 500 2 SER A 68 144.39 177.64 REMARK 500 2 ASN A 70 -67.63 70.52 REMARK 500 2 LYS A 71 38.23 -176.25 REMARK 500 2 ALA A 89 167.65 -43.50 REMARK 500 2 LEU A 91 173.73 58.68 REMARK 500 2 ARG A 92 90.17 33.57 REMARK 500 2 SER A 95 131.03 -36.11 REMARK 500 2 PRO A 96 -175.38 -69.70 REMARK 500 2 SER A 104 38.28 -82.13 REMARK 500 2 PRO A 106 -176.73 -69.71 REMARK 500 2 SER A 107 176.94 55.96 REMARK 500 3 ASP A 11 177.08 56.61 REMARK 500 3 ARG A 12 156.49 -41.91 REMARK 500 3 GLU A 24 -51.27 -152.85 REMARK 500 3 GLU A 47 139.24 -172.88 REMARK 500 3 VAL A 67 -50.26 -136.85 REMARK 500 3 ASN A 70 -66.17 71.84 REMARK 500 3 LYS A 71 36.56 -173.57 REMARK 500 3 ALA A 89 -150.15 35.23 REMARK 500 3 LYS A 90 -31.27 -138.86 REMARK 500 3 LEU A 91 36.27 32.03 REMARK 500 3 ARG A 92 40.85 -145.22 REMARK 500 4 SER A 6 -57.93 -178.38 REMARK 500 4 SER A 8 86.41 -161.12 REMARK 500 4 ASP A 11 170.05 -49.68 REMARK 500 4 ARG A 12 156.44 -46.50 REMARK 500 4 THR A 22 103.78 -57.88 REMARK 500 4 GLU A 24 -44.79 -144.46 REMARK 500 4 ILE A 35 -34.42 -37.24 REMARK 500 REMARK 500 THIS ENTRY HAS 311 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007008668 RELATED DB: TARGETDB DBREF 1WI4 A 8 103 UNP Q9WV89 STXB4_MOUSE 12 107 SEQADV 1WI4 GLY A 1 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 2 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 3 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 GLY A 4 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 5 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 6 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 GLY A 7 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 104 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 GLY A 105 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 PRO A 106 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 107 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 SER A 108 UNP Q9WV89 CLONING ARTIFACT SEQADV 1WI4 GLY A 109 UNP Q9WV89 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY SER PRO LEU ASP ARG ASP SEQRES 2 A 109 PRO ALA PHE ARG VAL ILE THR VAL THR LYS GLU THR GLY SEQRES 3 A 109 LEU GLY LEU LYS ILE LEU GLY GLY ILE ASN ARG ASN GLU SEQRES 4 A 109 GLY PRO LEU VAL TYR ILE HIS GLU VAL ILE PRO GLY GLY SEQRES 5 A 109 ASP CYS TYR LYS ASP GLY ARG LEU LYS PRO GLY ASP GLN SEQRES 6 A 109 LEU VAL SER ILE ASN LYS GLU SER MET ILE GLY VAL SER SEQRES 7 A 109 PHE GLU GLU ALA LYS SER ILE ILE THR ARG ALA LYS LEU SEQRES 8 A 109 ARG SER GLU SER PRO TRP GLU ILE ALA PHE ILE ARG SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 GLY A 52 GLY A 58 1 7 HELIX 2 2 SER A 78 ALA A 89 1 12 SHEET 1 A 3 PHE A 16 VAL A 21 0 SHEET 2 A 3 TRP A 97 ILE A 102 -1 O PHE A 101 N ARG A 17 SHEET 3 A 3 LEU A 66 ILE A 69 -1 N VAL A 67 O ALA A 100 SHEET 1 B 2 LEU A 29 GLY A 33 0 SHEET 2 B 2 VAL A 43 VAL A 48 -1 O TYR A 44 N LEU A 32 CISPEP 1 GLY A 40 PRO A 41 1 0.01 CISPEP 2 GLY A 40 PRO A 41 2 0.07 CISPEP 3 GLY A 40 PRO A 41 3 0.08 CISPEP 4 GLY A 40 PRO A 41 4 0.07 CISPEP 5 GLY A 40 PRO A 41 5 0.12 CISPEP 6 GLY A 40 PRO A 41 6 -0.01 CISPEP 7 GLY A 40 PRO A 41 7 0.05 CISPEP 8 GLY A 40 PRO A 41 8 0.01 CISPEP 9 GLY A 40 PRO A 41 9 0.01 CISPEP 10 GLY A 40 PRO A 41 10 0.05 CISPEP 11 GLY A 40 PRO A 41 11 0.07 CISPEP 12 GLY A 40 PRO A 41 12 0.03 CISPEP 13 GLY A 40 PRO A 41 13 0.08 CISPEP 14 GLY A 40 PRO A 41 14 0.06 CISPEP 15 GLY A 40 PRO A 41 15 0.02 CISPEP 16 GLY A 40 PRO A 41 16 0.08 CISPEP 17 GLY A 40 PRO A 41 17 -0.03 CISPEP 18 GLY A 40 PRO A 41 18 0.09 CISPEP 19 GLY A 40 PRO A 41 19 0.06 CISPEP 20 GLY A 40 PRO A 41 20 0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000