PDB Short entry for 1WJ5 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WJ5 TITLE SOLUTION STRUCTURE OF THE HYPOTHETICAL DOMAIN OF RIKEN CDNA 0610009H20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN (RIKEN CDNA 0610009H20); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HYPOTHETICAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FANTOM 2 CDNA 0610009H20; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030811-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS WINGED HELIX, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HATTA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WJ5 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WJ5 1 VERSN REVDAT 1 28-NOV-04 1WJ5 0 JRNL AUTH R.HATTA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HYPOTHETICAL DOMAIN OF RIKEN CDNA JRNL TITL 2 0610009H20 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023635. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, NMR REMARK 210 VEIW 5.0.4, KUJIRA 0.872, CYANA REMARK 210 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 13 H LEU A 17 1.53 REMARK 500 O LEU A 48 H LEU A 51 1.54 REMARK 500 O LEU A 92 H THR A 107 1.58 REMARK 500 O GLU A 46 H SER A 50 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 170.42 64.51 REMARK 500 1 SER A 5 -59.64 -149.75 REMARK 500 1 SER A 6 106.12 69.14 REMARK 500 1 ASN A 8 -58.65 -160.06 REMARK 500 1 LYS A 9 77.61 -151.01 REMARK 500 1 LEU A 12 177.31 51.76 REMARK 500 1 SER A 19 -38.14 -37.83 REMARK 500 1 PHE A 37 -176.67 -175.76 REMARK 500 1 ARG A 54 158.91 -44.95 REMARK 500 1 VAL A 56 -142.13 -153.43 REMARK 500 1 THR A 57 46.09 -108.76 REMARK 500 1 SER A 59 57.08 -175.23 REMARK 500 1 SER A 62 -179.28 54.75 REMARK 500 1 LYS A 68 73.54 -114.14 REMARK 500 1 ASP A 69 -165.48 -179.16 REMARK 500 1 SER A 70 -74.39 -142.94 REMARK 500 1 SER A 73 -54.82 -175.62 REMARK 500 1 THR A 108 45.41 36.02 REMARK 500 1 LYS A 109 84.25 42.51 REMARK 500 1 ASP A 110 164.24 179.77 REMARK 500 1 LYS A 111 163.45 -45.10 REMARK 500 1 SER A 118 114.07 60.01 REMARK 500 2 SER A 6 -60.37 -178.28 REMARK 500 2 ASN A 8 123.26 175.18 REMARK 500 2 LYS A 9 60.27 -118.85 REMARK 500 2 ASP A 10 114.23 -161.77 REMARK 500 2 SER A 19 -39.72 -36.90 REMARK 500 2 ARG A 54 158.34 -47.32 REMARK 500 2 VAL A 56 -142.43 -151.74 REMARK 500 2 SER A 59 -51.14 -168.23 REMARK 500 2 LEU A 67 137.90 66.23 REMARK 500 2 LYS A 68 -66.78 163.72 REMARK 500 2 ASP A 97 -24.71 155.63 REMARK 500 2 SER A 98 147.81 63.66 REMARK 500 2 THR A 107 -165.40 -103.93 REMARK 500 2 THR A 108 -156.92 37.99 REMARK 500 2 ASP A 110 91.68 58.52 REMARK 500 2 LYS A 111 72.61 31.19 REMARK 500 2 LEU A 113 155.86 -45.74 REMARK 500 2 GLN A 114 -174.44 -174.12 REMARK 500 2 SER A 115 75.71 -101.39 REMARK 500 2 SER A 119 -59.29 -176.51 REMARK 500 3 SER A 5 97.59 -163.27 REMARK 500 3 SER A 6 171.77 59.43 REMARK 500 3 ASN A 8 105.58 60.80 REMARK 500 3 LYS A 9 105.68 65.87 REMARK 500 3 SER A 19 -33.09 -36.80 REMARK 500 3 SER A 47 -31.70 -38.09 REMARK 500 3 ARG A 54 158.35 -44.98 REMARK 500 3 VAL A 56 150.81 166.77 REMARK 500 REMARK 500 THIS ENTRY HAS 459 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007119179.1 RELATED DB: TARGETDB DBREF 1WJ5 A 8 114 UNP Q8K2X3 OBFC1_MOUSE 205 311 SEQADV 1WJ5 GLY A 1 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 2 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 3 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 GLY A 4 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 5 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 6 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 GLY A 7 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 115 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 GLY A 116 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 PRO A 117 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 118 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 SER A 119 UNP Q8K2X3 CLONING ARTIFACT SEQADV 1WJ5 GLY A 120 UNP Q8K2X3 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY ASN LYS ASP ASN LEU ASP SEQRES 2 A 120 LEU ALA GLY LEU THR SER LEU LEU SER GLU LYS ILE LYS SEQRES 3 A 120 GLU PHE LEU GLN GLU LYS LYS MET GLN SER PHE TYR GLN SEQRES 4 A 120 GLN GLU LEU GLU THR VAL GLU SER LEU GLN SER LEU ALA SEQRES 5 A 120 SER ARG PRO VAL THR HIS SER THR GLY SER ASP GLN VAL SEQRES 6 A 120 GLU LEU LYS ASP SER GLY THR SER GLY VAL ALA GLN ARG SEQRES 7 A 120 VAL PHE LYS ASN ALA LEU GLN LEU LEU GLN GLU LYS GLY SEQRES 8 A 120 LEU VAL PHE GLN ARG ASP SER GLY SER ASP LYS LEU TYR SEQRES 9 A 120 TYR VAL THR THR LYS ASP LYS ASP LEU GLN SER GLY PRO SEQRES 10 A 120 SER SER GLY HELIX 1 1 ASP A 13 LYS A 33 1 21 HELIX 2 2 TYR A 38 THR A 44 1 7 HELIX 3 3 VAL A 45 SER A 53 1 9 HELIX 4 4 SER A 73 GLY A 91 1 19 SHEET 1 A 3 SER A 36 PHE A 37 0 SHEET 2 A 3 TYR A 105 VAL A 106 -1 O TYR A 104 N PHE A 37 SHEET 3 A 3 VAL A 93 PHE A 94 -1 O TYR A 105 N PHE A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000