PDB Short entry for 1WL4 HEADER TRANSFERASE 20-JUN-04 1WL4 TITLE HUMAN CYTOSOLIC ACETOACETYL-COA THIOLASE COMPLEXED WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COENZYME A ACETYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC ACETOACETYL-COA THIOLASE, ACETOACETYL COENZYME A COMPND 5 THIOLASE; COMPND 6 EC: 2.3.1.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIOLASE FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KURSULA,T.FUKAO,N.KONDO,R.K.WIERENGA REVDAT 4 13-JUL-11 1WL4 1 VERSN REVDAT 3 24-FEB-09 1WL4 1 VERSN REVDAT 2 15-MAR-05 1WL4 1 JRNL REVDAT 1 01-MAR-05 1WL4 0 JRNL AUTH P.KURSULA,H.SIKKILA,T.FUKAO,N.KONDO,R.K.WIERENGA JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN CYTOSOLIC JRNL TITL 2 THIOLASE (CT): A COMPARISON OF THE ACTIVE SITES OF HUMAN CT, JRNL TITL 3 BACTERIAL THIOLASE, AND BACTERIAL KAS I JRNL REF J.MOL.BIOL. V. 347 189 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15733928 JRNL DOI 10.1016/J.JMB.2005.01.018 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 69103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.107 REMARK 3 R VALUE (WORKING SET) : 0.106 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3033 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2847 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4117 ; 1.819 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6641 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 8.600 ; 5.051 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.419 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3306 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 531 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2839 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1634 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 445 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 110 ; 0.299 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2500 ; 3.417 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 815 ; 1.632 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3150 ; 3.685 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 4.728 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 967 ; 5.954 ; 5.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6815 ; 2.440 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 585 ; 8.507 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5839 ; 3.709 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1WL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB023696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LITHIUM SULFATE, PH REMARK 280 5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.84500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.84500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.91500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.84500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.93000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.91500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -247.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.83000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 109.83000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3317 O HOH A 3538 1.70 REMARK 500 O ARG A 396 O HOH A 3435 1.86 REMARK 500 O HOH A 3194 O HOH A 3576 1.87 REMARK 500 O HOH A 3220 O HOH A 3490 2.02 REMARK 500 O HOH A 3358 O HOH A 3524 2.02 REMARK 500 O HOH A 3246 O HOH A 3387 2.03 REMARK 500 CD1 TYR A 130 O HOH A 3321 2.03 REMARK 500 O HOH A 3127 O HOH A 3530 2.03 REMARK 500 O HOH A 3379 O HOH A 3497 2.12 REMARK 500 O HOH A 3429 O HOH A 3453 2.13 REMARK 500 O HOH A 3493 O HOH A 3583 2.13 REMARK 500 O HOH A 3061 O HOH A 3537 2.18 REMARK 500 O HOH A 3327 O HOH A 3526 2.18 REMARK 500 O HOH A 3467 O HOH A 3493 2.18 REMARK 500 O HOH A 3190 O HOH A 3479 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3202 O HOH A 3529 1655 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 50 CD GLU A 50 OE1 0.073 REMARK 500 GLU A 371 CD GLU A 371 OE2 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 159 ND1 - CE1 - NE2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 -58.42 67.18 REMARK 500 ASN A 68 74.31 33.50 REMARK 500 MET A 90 49.77 -149.82 REMARK 500 ILE A 91 -121.87 38.77 REMARK 500 THR A 245 -25.98 -141.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 159 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3517 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A3548 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A3550 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A3570 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A3572 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A3574 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A3585 DISTANCE = 6.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WL5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.26 ANGSTROM DBREF 1WL4 A 1 397 UNP Q9BWD1 THIC_HUMAN 1 397 SEQADV 1WL4 CSO A 92 UNP Q9BWD1 CYS 92 MODIFIED RESIDUE SEQADV 1WL4 LYS A 169 UNP Q9BWD1 THR 169 CONFLICT SEQADV 1WL4 VAL A 262 UNP Q9BWD1 ALA 262 CONFLICT SEQRES 1 A 397 MET ASN ALA GLY SER ASP PRO VAL VAL ILE VAL SER ALA SEQRES 2 A 397 ALA ARG THR ILE ILE GLY SER PHE ASN GLY ALA LEU ALA SEQRES 3 A 397 ALA VAL PRO VAL GLN ASP LEU GLY SER THR VAL ILE LYS SEQRES 4 A 397 GLU VAL LEU LYS ARG ALA THR VAL ALA PRO GLU ASP VAL SEQRES 5 A 397 SER GLU VAL ILE PHE GLY HIS VAL LEU ALA ALA GLY CYS SEQRES 6 A 397 GLY GLN ASN PRO VAL ARG GLN ALA SER VAL GLY ALA GLY SEQRES 7 A 397 ILE PRO TYR SER VAL PRO ALA TRP SER CYS GLN MET ILE SEQRES 8 A 397 CSO GLY SER GLY LEU LYS ALA VAL CYS LEU ALA VAL GLN SEQRES 9 A 397 SER ILE GLY ILE GLY ASP SER SER ILE VAL VAL ALA GLY SEQRES 10 A 397 GLY MET GLU ASN MET SER LYS ALA PRO HIS LEU ALA TYR SEQRES 11 A 397 LEU ARG THR GLY VAL LYS ILE GLY GLU MET PRO LEU THR SEQRES 12 A 397 ASP SER ILE LEU CYS ASP GLY LEU THR ASP ALA PHE HIS SEQRES 13 A 397 ASN CYS HIS MET GLY ILE THR ALA GLU ASN VAL ALA LYS SEQRES 14 A 397 LYS TRP GLN VAL SER ARG GLU ASP GLN ASP LYS VAL ALA SEQRES 15 A 397 VAL LEU SER GLN ASN ARG THR GLU ASN ALA GLN LYS ALA SEQRES 16 A 397 GLY HIS PHE ASP LYS GLU ILE VAL PRO VAL LEU VAL SER SEQRES 17 A 397 THR ARG LYS GLY LEU ILE GLU VAL LYS THR ASP GLU PHE SEQRES 18 A 397 PRO ARG HIS GLY SER ASN ILE GLU ALA MET SER LYS LEU SEQRES 19 A 397 LYS PRO TYR PHE LEU THR ASP GLY THR GLY THR VAL THR SEQRES 20 A 397 PRO ALA ASN ALA SER GLY ILE ASN ASP GLY ALA ALA ALA SEQRES 21 A 397 VAL VAL LEU MET LYS LYS SER GLU ALA ASP LYS ARG GLY SEQRES 22 A 397 LEU THR PRO LEU ALA ARG ILE VAL SER TRP SER GLN VAL SEQRES 23 A 397 GLY VAL GLU PRO SER ILE MET GLY ILE GLY PRO ILE PRO SEQRES 24 A 397 ALA ILE LYS GLN ALA VAL THR LYS ALA GLY TRP SER LEU SEQRES 25 A 397 GLU ASP VAL ASP ILE PHE GLU ILE ASN GLU ALA PHE ALA SEQRES 26 A 397 ALA VAL SER ALA ALA ILE VAL LYS GLU LEU GLY LEU ASN SEQRES 27 A 397 PRO GLU LYS VAL ASN ILE GLU GLY GLY ALA ILE ALA LEU SEQRES 28 A 397 GLY HIS PRO LEU GLY ALA SER GLY CYS ARG ILE LEU VAL SEQRES 29 A 397 THR LEU LEU HIS THR LEU GLU ARG MET GLY ARG SER ARG SEQRES 30 A 397 GLY VAL ALA ALA LEU CYS ILE GLY GLY GLY MET GLY ILE SEQRES 31 A 397 ALA MET CYS VAL GLN ARG GLU MODRES 1WL4 CSO A 92 CYS S-HYDROXYCYSTEINE HET CSO A 92 7 HET SO4 A3001 5 HET SO4 A3002 5 HET SO4 A3003 5 HET COA A1001 48 HET GOL A2001 6 HET GOL A2002 6 HET GOL A2003 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SO4 SULFATE ION HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 COA C21 H36 N7 O16 P3 S FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *585(H2 O) HELIX 1 1 PRO A 29 THR A 46 1 18 HELIX 2 2 ALA A 48 VAL A 52 5 5 HELIX 3 3 ASN A 68 ALA A 77 1 10 HELIX 4 4 MET A 90 CSO A 92 5 3 HELIX 5 5 GLY A 93 ILE A 108 1 16 HELIX 6 6 SER A 145 GLY A 150 1 6 HELIX 7 7 HIS A 159 GLN A 172 1 14 HELIX 8 8 SER A 174 ALA A 195 1 22 HELIX 9 9 ASN A 227 LYS A 233 1 7 HELIX 10 10 LYS A 266 ARG A 272 1 7 HELIX 11 11 GLU A 289 ILE A 295 5 7 HELIX 12 12 GLY A 296 GLY A 309 1 14 HELIX 13 13 SER A 311 VAL A 315 5 5 HELIX 14 14 PHE A 324 GLY A 336 1 13 HELIX 15 15 ASN A 338 VAL A 342 5 5 HELIX 16 16 GLY A 347 GLY A 352 1 6 HELIX 17 17 ALA A 357 GLY A 374 1 18 SHEET 1 A 5 GLY A 19 SER A 20 0 SHEET 2 A 5 ASN A 255 LYS A 265 -1 O ASP A 256 N GLY A 19 SHEET 3 A 5 ILE A 113 ASN A 121 -1 N ALA A 116 O VAL A 261 SHEET 4 A 5 GLU A 54 GLY A 58 1 N GLY A 58 O GLY A 117 SHEET 5 A 5 ALA A 85 CYS A 88 1 O CYS A 88 N PHE A 57 SHEET 1 B 7 GLY A 19 SER A 20 0 SHEET 2 B 7 ASN A 255 LYS A 265 -1 O ASP A 256 N GLY A 19 SHEET 3 B 7 VAL A 8 ARG A 15 -1 N VAL A 9 O MET A 264 SHEET 4 B 7 ALA A 278 GLY A 287 -1 O ILE A 280 N VAL A 8 SHEET 5 B 7 MET A 388 ARG A 396 -1 O GLN A 395 N ARG A 279 SHEET 6 B 7 ARG A 377 ILE A 384 -1 N GLY A 378 O VAL A 394 SHEET 7 B 7 ILE A 317 ILE A 320 1 N GLU A 319 O VAL A 379 SHEET 1 C 2 HIS A 127 LEU A 128 0 SHEET 2 C 2 THR A 143 ASP A 144 -1 O THR A 143 N LEU A 128 SHEET 1 D 2 VAL A 205 THR A 209 0 SHEET 2 D 2 GLY A 212 VAL A 216 -1 O ILE A 214 N VAL A 207 LINK C ILE A 91 N CSO A 92 1555 1555 1.34 LINK C CSO A 92 N GLY A 93 1555 1555 1.33 SITE 1 AC1 10 SER A 12 ALA A 13 ARG A 44 LEU A 277 SITE 2 AC1 10 ASN A 338 HIS A 368 HOH A3022 HOH A3060 SITE 3 AC1 10 HOH A3090 HOH A3118 SITE 1 AC2 9 TYR A 81 HIS A 156 GLU A 289 PRO A 290 SITE 2 AC2 9 SER A 291 HOH A3207 HOH A3279 HOH A3483 SITE 3 AC2 9 HOH A3502 SITE 1 AC3 7 GLU A 215 VAL A 216 LYS A 217 THR A 218 SITE 2 AC3 7 HOH A3408 HOH A3440 HOH A3498 SITE 1 AC4 28 LYS A 136 LEU A 151 HIS A 159 GLN A 186 SITE 2 AC4 28 ARG A 223 SER A 226 MET A 231 TYR A 237 SITE 3 AC4 28 PRO A 248 ALA A 249 SER A 252 GLY A 253 SITE 4 AC4 28 MET A 293 PHE A 324 GOL A2001 HOH A3024 SITE 5 AC4 28 HOH A3041 HOH A3050 HOH A3053 HOH A3062 SITE 6 AC4 28 HOH A3068 HOH A3087 HOH A3164 HOH A3225 SITE 7 AC4 28 HOH A3273 HOH A3278 HOH A3351 HOH A3368 SITE 1 AC5 8 ARG A 223 HIS A 224 GLY A 225 ASN A 227 SITE 2 AC5 8 ALA A 230 COA A1001 HOH A3041 HOH A3465 SITE 1 AC6 9 ASN A 187 GLU A 190 ASN A 191 ASP A 270 SITE 2 AC6 9 LYS A 271 HOH A3402 HOH A3495 HOH A3507 SITE 3 AC6 9 HOH A3546 SITE 1 AC7 5 VAL A 75 GLY A 78 ILE A 79 PRO A 80 SITE 2 AC7 5 LYS A 170 CRYST1 57.860 109.830 155.690 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006423 0.00000