PDB Short entry for 1WLX HEADER PROTEIN BINDING 30-JUN-04 1WLX TITLE SOLUTION STRUCTURE OF THE THIRD SPECTRIN REPEAT OF ALPHA-ACTININ-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACTININ 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD SPECTRIN REPEAT (1-129); COMPND 5 SYNONYM: NON-MUSCLE ALPHA-ACTININ 4, F-ACTIN CROSS LINKING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACTN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS THREE-HELIX BUNDLE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KOWALSKI,A.L.MERKEL,G.W.BOOKER REVDAT 3 02-MAR-22 1WLX 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WLX 1 VERSN REVDAT 1 09-AUG-05 1WLX 0 JRNL AUTH K.KOWALSKI,A.L.MERKEL,G.W.BOOKER JRNL TITL SOLUTION STRUCTURE OF THE THIRD SPECTRIN REPEAT OF JRNL TITL 2 ALPHA-ACTININ-4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.8, ARIA 1.2 REMARK 3 AUTHORS : DELAGLIO ET AL (NMRPIPE), LINGE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 2256 REMARK 3 RESTRAINTS; 2021 NOE-DERIVED DISTANCE CONSTRAINTS, 235 DIHEDRAL REMARK 3 ANGLE RESTRAINTS REMARK 4 REMARK 4 1WLX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023723. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.75 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM ACTININ-4; 25MM PHOSPHATE REMARK 210 BUFFER; 100MM NACL; 90% H2O, 10% REMARK 210 D2O; 0.01% NAN3; 0.6MM ACTININ-4; REMARK 210 25MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 90% H2O, 10% D2O; 0.01% REMARK 210 NAN3; 0.6MM ACTININ-4 U-15N; REMARK 210 25MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 90% H2O, 10% D2O; 0.01% REMARK 210 NAN3; 0.6MM ACTININ-4 U-15N, 13C; REMARK 210 25MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 90% H2O, 10% D2O; 0.01% REMARK 210 NAN3; 0.6MM ACTININ-4 U-15N, 13C; REMARK 210 25MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 90% H2O, 10% D2O; 0.01% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.11, CNS 1.1, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ASSIGNMENTS WERE OBTAINED USING HNCACB, CBCA(CO)NH, HNCO, REMARK 210 H(CCO)NH-TOCSY, C(CO)NH-TOCSY, 15N NOESY-HSQC, 13C HSQC, 1H REMARK 210 TOCSY, 1H NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 11 HH TYR A 95 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 42 -65.52 -107.70 REMARK 500 1 GLN A 128 -128.92 -83.37 REMARK 500 2 LYS A 88 76.71 -107.01 REMARK 500 2 SER A 90 -119.03 53.13 REMARK 500 3 ASN A 85 -152.38 -98.64 REMARK 500 3 HIS A 86 38.85 -142.51 REMARK 500 3 LEU A 89 100.47 -40.74 REMARK 500 3 ASN A 93 119.12 71.36 REMARK 500 3 THR A 97 67.54 -108.46 REMARK 500 4 SER A 2 92.13 -68.33 REMARK 500 4 THR A 3 -30.12 -150.79 REMARK 500 4 HIS A 42 -50.50 -120.46 REMARK 500 4 ASN A 85 -148.32 -105.30 REMARK 500 4 GLN A 128 -141.39 -103.58 REMARK 500 5 HIS A 42 -51.19 -123.81 REMARK 500 5 ASN A 85 -153.78 -152.31 REMARK 500 5 LYS A 88 60.65 -117.44 REMARK 500 5 LEU A 89 -95.85 -138.62 REMARK 500 5 GLN A 128 -145.18 -92.52 REMARK 500 6 SER A 2 -74.63 -77.61 REMARK 500 6 ASN A 85 -159.04 -104.42 REMARK 500 6 VAL A 98 105.31 -43.83 REMARK 500 6 GLN A 128 -152.74 -100.78 REMARK 500 7 LEU A 89 -78.97 -48.47 REMARK 500 7 TYR A 95 -42.46 -131.09 REMARK 500 7 GLN A 128 -133.13 -95.03 REMARK 500 8 SER A 2 94.74 -65.19 REMARK 500 8 ASN A 85 -153.97 -125.85 REMARK 500 8 SER A 90 42.69 -76.32 REMARK 500 8 GLN A 128 -133.76 -95.60 REMARK 500 9 LYS A 88 78.96 -107.90 REMARK 500 9 ASN A 93 147.24 68.79 REMARK 500 9 THR A 97 48.52 -88.89 REMARK 500 9 GLN A 101 -53.63 -125.01 REMARK 500 9 GLN A 128 -135.15 -87.29 REMARK 500 10 ASN A 85 -153.63 -105.96 REMARK 500 10 HIS A 86 38.48 -141.24 REMARK 500 10 LYS A 88 79.71 -108.01 REMARK 500 10 SER A 90 -73.13 71.08 REMARK 500 10 GLN A 128 -153.48 -100.16 REMARK 500 11 ASN A 85 -155.69 -100.23 REMARK 500 11 HIS A 86 39.61 -140.95 REMARK 500 11 GLN A 128 -138.93 -104.33 REMARK 500 12 SER A 2 -40.95 -179.46 REMARK 500 12 SER A 90 -44.00 -151.69 REMARK 500 12 GLN A 128 -128.72 -88.77 REMARK 500 13 SER A 2 -40.98 74.14 REMARK 500 13 GLN A 79 -51.15 -122.91 REMARK 500 13 ILE A 87 112.39 -28.84 REMARK 500 13 VAL A 98 106.61 -59.44 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HCI RELATED DB: PDB REMARK 900 ALPHA-ACTININ-2; FAMILY MEMBER DBREF 1WLX A 3 129 UNP O43707 ACTN4_HUMAN 519 645 SEQADV 1WLX GLY A 1 UNP O43707 CLONING ARTIFACT SEQADV 1WLX SER A 2 UNP O43707 CLONING ARTIFACT SEQRES 1 A 129 GLY SER THR GLU LYS GLN LEU GLU ALA ILE ASP GLN LEU SEQRES 2 A 129 HIS LEU GLU TYR ALA LYS ARG ALA ALA PRO PHE ASN ASN SEQRES 3 A 129 TRP MET GLU SER ALA MET GLU ASP LEU GLN ASP MET PHE SEQRES 4 A 129 ILE VAL HIS THR ILE GLU GLU ILE GLU GLY LEU ILE SER SEQRES 5 A 129 ALA HIS ASP GLN PHE LYS SER THR LEU PRO ASP ALA ASP SEQRES 6 A 129 ARG GLU ARG GLU ALA ILE LEU ALA ILE HIS LYS GLU ALA SEQRES 7 A 129 GLN ARG ILE ALA GLU SER ASN HIS ILE LYS LEU SER GLY SEQRES 8 A 129 SER ASN PRO TYR THR THR VAL THR PRO GLN ILE ILE ASN SEQRES 9 A 129 SER LYS TRP GLU LYS VAL GLN GLN LEU VAL PRO LYS ARG SEQRES 10 A 129 ASP HIS ALA LEU LEU GLU GLU GLN SER LYS GLN GLN HELIX 1 1 SER A 2 ASP A 37 1 36 HELIX 2 2 THR A 43 ASN A 85 1 43 HELIX 3 3 THR A 99 SER A 126 1 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000