PDB Short entry for 1WXQ HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JAN-05 1WXQ TITLE CRYSTAL STRUCTURE OF GTP BINDING PROTEIN FROM PYROCOCCUS HORIKOSHII TITLE 2 OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS GTP-BINDING PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.K.LOKANATH,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 1WXQ 1 VERSN REVDAT 2 24-FEB-09 1WXQ 1 VERSN REVDAT 1 18-APR-06 1WXQ 0 JRNL AUTH N.K.LOKANATH,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF GTP BINDING PROTEIN FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 11523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.927 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.403 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.326 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.845 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2747 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3716 ; 1.811 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 4.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2058 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1426 ; 0.292 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.324 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 1.390 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2753 ; 2.456 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1039 ; 4.225 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 963 ; 6.259 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4837 55.8748 44.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.0436 REMARK 3 T33: 0.0582 T12: 0.0433 REMARK 3 T13: -0.0400 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.6366 L22: 0.9338 REMARK 3 L33: 1.5719 L12: -0.0282 REMARK 3 L13: 0.2831 L23: 0.4818 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.0014 S13: -0.0671 REMARK 3 S21: 0.0745 S22: 0.0210 S23: -0.0354 REMARK 3 S31: 0.3876 S32: 0.1822 S33: -0.0890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB024126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.97942, 1.0 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL REMARK 200 OPTICS : RH COATED BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, DIOXANE, PH 7.5, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.46550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.46550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.48100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.49950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.48100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.49950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.46550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.48100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.49950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.46550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.48100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.49950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 VAL A 25 REMARK 465 GLU A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 TYR A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLU A 36 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 465 VAL A 82 REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 HIS A 86 REMARK 465 GLU A 87 REMARK 465 GLY A 88 REMARK 465 ARG A 89 REMARK 465 GLY A 90 REMARK 465 LEU A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 93 REMARK 465 LYS A 94 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 SER A 273 REMARK 465 GLU A 274 REMARK 465 PHE A 275 REMARK 465 LYS A 276 REMARK 465 VAL A 277 REMARK 465 LEU A 278 REMARK 465 ARG A 279 REMARK 465 ASP A 280 REMARK 465 MSE A 281 REMARK 465 SER A 282 REMARK 465 GLU A 283 REMARK 465 LYS A 284 REMARK 465 GLN A 285 REMARK 465 LYS A 286 REMARK 465 ARG A 287 REMARK 465 ASN A 329 REMARK 465 LYS A 330 REMARK 465 LEU A 331 REMARK 465 THR A 332 REMARK 465 ASP A 333 REMARK 465 THR A 396 REMARK 465 ARG A 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 17 OG1 THR A 21 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 150 NE1 TRP A 150 CE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 42 -169.86 -114.24 REMARK 500 PRO A 49 -24.96 -38.73 REMARK 500 GLU A 52 -74.93 -161.99 REMARK 500 SER A 56 76.70 37.88 REMARK 500 TYR A 62 -147.06 -127.43 REMARK 500 ARG A 65 109.19 -174.55 REMARK 500 PRO A 121 137.66 -37.69 REMARK 500 TRP A 150 -7.49 -52.81 REMARK 500 LYS A 152 38.26 -86.95 REMARK 500 PHE A 153 -37.42 -131.82 REMARK 500 ILE A 157 -17.69 -153.15 REMARK 500 LYS A 259 23.98 -67.35 REMARK 500 ALA A 260 78.47 -106.45 REMARK 500 LYS A 262 -60.27 -162.24 REMARK 500 ALA A 263 11.69 -64.39 REMARK 500 ILE A 269 -85.67 -162.97 REMARK 500 LEU A 289 46.83 -76.84 REMARK 500 SER A 302 -174.32 174.36 REMARK 500 ASP A 315 -67.36 -102.44 REMARK 500 ALA A 372 9.47 -63.23 REMARK 500 ASN A 387 36.31 75.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 261 LYS A 262 143.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 267 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 459 DISTANCE = 6.80 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000525.1 RELATED DB: TARGETDB DBREF 1WXQ A 1 397 UNP O58261 O58261_PYRHO 1 397 SEQADV 1WXQ MSE A 1 UNP O58261 MET 1 MODIFIED RESIDUE SEQADV 1WXQ MSE A 75 UNP O58261 MET 75 MODIFIED RESIDUE SEQADV 1WXQ MSE A 101 UNP O58261 MET 101 MODIFIED RESIDUE SEQADV 1WXQ MSE A 186 UNP O58261 MET 186 MODIFIED RESIDUE SEQADV 1WXQ MSE A 217 UNP O58261 MET 217 MODIFIED RESIDUE SEQADV 1WXQ MSE A 281 UNP O58261 MET 281 MODIFIED RESIDUE SEQADV 1WXQ MSE A 290 UNP O58261 MET 290 MODIFIED RESIDUE SEQADV 1WXQ MSE A 345 UNP O58261 MET 345 MODIFIED RESIDUE SEQRES 1 A 397 MSE GLU ILE GLY VAL VAL GLY LYS PRO ASN VAL GLY LYS SEQRES 2 A 397 SER THR PHE PHE SER ALA ALA THR LEU VAL ASP VAL GLU SEQRES 3 A 397 ILE ALA ASN TYR PRO PHE THR THR ILE GLU ALA ASN VAL SEQRES 4 A 397 GLY VAL THR TYR ALA ILE THR ASP HIS PRO CYS LYS GLU SEQRES 5 A 397 LEU GLY CYS SER PRO ASN PRO GLN ASN TYR GLU TYR ARG SEQRES 6 A 397 ASN GLY LEU ALA LEU ILE PRO VAL LYS MSE VAL ASP VAL SEQRES 7 A 397 ALA GLY LEU VAL PRO GLY ALA HIS GLU GLY ARG GLY LEU SEQRES 8 A 397 GLY ASN LYS PHE LEU ASP ASP LEU ARG MSE ALA SER ALA SEQRES 9 A 397 LEU ILE HIS VAL VAL ASP ALA THR GLY LYS THR ASP PRO SEQRES 10 A 397 GLU GLY GLN PRO THR ASP TYR HIS ASP PRO VAL GLU ASP SEQRES 11 A 397 ILE GLU PHE LEU GLU ARG GLU ILE ASP TYR TRP ILE TYR SEQRES 12 A 397 GLY ILE LEU SER LYS GLY TRP ASP LYS PHE ALA LYS ARG SEQRES 13 A 397 ILE LYS LEU GLN LYS ILE LYS LEU GLU SER ALA ILE ALA SEQRES 14 A 397 GLU HIS LEU SER GLY ILE GLY VAL ASN GLU ASN ASP VAL SEQRES 15 A 397 TRP GLU ALA MSE HIS LYS LEU ASN LEU PRO GLU ASP PRO SEQRES 16 A 397 THR LYS TRP SER GLN ASP ASP LEU LEU ALA PHE ALA SER SEQRES 17 A 397 GLU ILE ARG ARG VAL ASN LYS PRO MSE VAL ILE ALA ALA SEQRES 18 A 397 ASN LYS ALA ASP ALA ALA SER ASP GLU GLN ILE LYS ARG SEQRES 19 A 397 LEU VAL ARG GLU GLU GLU LYS ARG GLY TYR ILE VAL ILE SEQRES 20 A 397 PRO THR SER ALA ALA ALA GLU LEU THR LEU ARG LYS ALA SEQRES 21 A 397 ALA LYS ALA GLY PHE ILE GLU TYR ILE PRO GLY ALA SER SEQRES 22 A 397 GLU PHE LYS VAL LEU ARG ASP MSE SER GLU LYS GLN LYS SEQRES 23 A 397 ARG ALA LEU MSE VAL ILE LYS GLU LYS VAL LEU ASP ARG SEQRES 24 A 397 PHE GLY SER THR GLY VAL GLN GLU VAL ILE ASN ARG VAL SEQRES 25 A 397 VAL PHE ASP LEU LEU LYS LEU ILE PRO VAL TYR PRO VAL SEQRES 26 A 397 HIS ASP GLU ASN LYS LEU THR ASP GLN PHE GLY ASN VAL SEQRES 27 A 397 LEU PRO HIS VAL PHE LEU MSE LYS LYS GLY SER THR PRO SEQRES 28 A 397 ARG ASP LEU ALA PHE LYS VAL HIS THR ASP LEU GLY LYS SEQRES 29 A 397 GLY PHE LEU TYR ALA ILE ASN ALA ARG THR LYS ARG ARG SEQRES 30 A 397 VAL GLY GLU ASP TYR GLU LEU GLN PHE ASN ASP ILE VAL SEQRES 31 A 397 LYS ILE VAL SER VAL THR ARG MODRES 1WXQ MSE A 1 MET SELENOMETHIONINE MODRES 1WXQ MSE A 75 MET SELENOMETHIONINE MODRES 1WXQ MSE A 101 MET SELENOMETHIONINE MODRES 1WXQ MSE A 186 MET SELENOMETHIONINE MODRES 1WXQ MSE A 217 MET SELENOMETHIONINE MODRES 1WXQ MSE A 290 MET SELENOMETHIONINE MODRES 1WXQ MSE A 345 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 75 8 HET MSE A 101 8 HET MSE A 186 8 HET MSE A 217 8 HET MSE A 290 8 HET MSE A 345 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *89(H2 O) HELIX 1 1 GLY A 12 LEU A 22 1 11 HELIX 2 2 ASP A 126 LYS A 148 1 23 HELIX 3 3 TRP A 150 LYS A 155 1 6 HELIX 4 4 LYS A 163 LEU A 172 1 10 HELIX 5 5 SER A 173 GLY A 176 5 4 HELIX 6 6 ASN A 178 LEU A 189 1 12 HELIX 7 7 ASP A 194 TRP A 198 5 5 HELIX 8 8 SER A 199 LYS A 215 1 17 HELIX 9 9 ALA A 224 ALA A 227 5 4 HELIX 10 10 SER A 228 ARG A 242 1 15 HELIX 11 11 SER A 250 LYS A 259 1 10 HELIX 12 12 MSE A 290 LEU A 297 1 8 HELIX 13 13 GLY A 304 ASP A 315 1 12 HELIX 14 14 THR A 350 HIS A 359 1 10 HELIX 15 15 HIS A 359 GLY A 365 1 7 SHEET 1 A 3 VAL A 39 ASP A 47 0 SHEET 2 A 3 LEU A 68 ASP A 77 -1 O ALA A 69 N THR A 46 SHEET 3 A 3 TYR A 64 ARG A 65 -1 N ARG A 65 O LEU A 68 SHEET 1 B 6 VAL A 39 ASP A 47 0 SHEET 2 B 6 LEU A 68 ASP A 77 -1 O ALA A 69 N THR A 46 SHEET 3 B 6 GLU A 2 GLY A 7 1 N VAL A 5 O VAL A 76 SHEET 4 B 6 ALA A 104 ASP A 110 1 O ALA A 104 N GLY A 4 SHEET 5 B 6 MSE A 217 ASN A 222 1 O ALA A 220 N VAL A 109 SHEET 6 B 6 ILE A 245 THR A 249 1 O ILE A 245 N ILE A 219 SHEET 1 C 4 PHE A 343 LYS A 346 0 SHEET 2 C 4 LEU A 319 VAL A 325 -1 N VAL A 322 O PHE A 343 SHEET 3 C 4 ASP A 388 SER A 394 1 O VAL A 390 N TYR A 323 SHEET 4 C 4 PHE A 366 ASN A 371 -1 N LEU A 367 O VAL A 393 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C LYS A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N VAL A 76 1555 1555 1.33 LINK C ARG A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ALA A 102 1555 1555 1.32 LINK C ALA A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N HIS A 187 1555 1555 1.33 LINK C PRO A 216 N MSE A 217 1555 1555 1.32 LINK C MSE A 217 N VAL A 218 1555 1555 1.32 LINK C LEU A 289 N MSE A 290 1555 1555 1.35 LINK C MSE A 290 N VAL A 291 1555 1555 1.35 LINK C LEU A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N LYS A 346 1555 1555 1.33 CISPEP 1 GLU A 267 TYR A 268 0 20.50 CRYST1 74.962 142.999 78.931 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012669 0.00000 HETATM 1 N MSE A 1 24.644 52.598 51.055 1.00 42.00 N HETATM 2 CA MSE A 1 23.668 52.985 49.998 1.00 40.72 C HETATM 3 C MSE A 1 22.810 51.794 49.583 1.00 38.54 C HETATM 4 O MSE A 1 23.297 50.671 49.461 1.00 37.56 O HETATM 5 CB MSE A 1 24.411 53.548 48.790 1.00 42.76 C HETATM 6 CG MSE A 1 23.510 54.185 47.750 1.00 47.17 C HETATM 7 SE MSE A 1 22.749 52.914 46.517 1.00 59.99 SE HETATM 8 CE MSE A 1 24.185 52.961 45.200 1.00 51.77 C