PDB Short entry for 1WZN HEADER TRANSFERASE 08-MAR-05 1WZN TITLE CRYSTAL STRUCTURE OF THE SAM-DEPENDENT METHYLTRANSFERASE FROM TITLE 2 PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 252AA LONG HYPOTHETICAL PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 13-MAR-24 1WZN 1 REMARK LINK REVDAT 3 13-JUL-11 1WZN 1 VERSN REVDAT 2 24-FEB-09 1WZN 1 VERSN REVDAT 1 14-MAR-06 1WZN 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF THE SAM-DEPENDENT METHYLTRANSFERASE JRNL TITL 2 FROM PYROCOCCUS HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3810079.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 81783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4124 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12361 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 647 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : 3.56000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.410 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SAH.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SAH.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000024194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 0.979480, 0.979085 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.120 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.07 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM SULFATE, PH 5.9, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.99550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.99550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.00550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.00550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.99550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.00550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.99550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.00550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 TRIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X, 1-Y, 1-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 132.01100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 145.99100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1204 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 148 REMARK 465 PHE A 149 REMARK 465 TYR A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 ASP A 154 REMARK 465 PHE A 252 REMARK 465 TRP B 148 REMARK 465 PHE B 149 REMARK 465 TYR B 150 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 ARG B 153 REMARK 465 ASP B 154 REMARK 465 PHE B 252 REMARK 465 TRP C 148 REMARK 465 PHE C 149 REMARK 465 TYR C 150 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 465 ARG C 153 REMARK 465 ASP C 154 REMARK 465 PHE C 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 214 OG1 THR B 211 4566 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 -82.04 -119.71 REMARK 500 TYR A 16 45.18 -108.17 REMARK 500 PHE A 113 59.45 71.49 REMARK 500 SER A 114 16.39 59.81 REMARK 500 THR B 6 -81.19 -120.84 REMARK 500 ASP B 204 88.88 -150.79 REMARK 500 THR C 6 -83.93 -121.61 REMARK 500 TYR C 16 42.59 -106.47 REMARK 500 ARG C 234 47.43 -77.02 REMARK 500 PRO C 238 -37.64 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1007 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 HOH A1062 O 81.9 REMARK 620 3 HOH A1181 O 97.4 99.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001305.1 RELATED DB: TARGETDB DBREF 1WZN A 1 252 GB 3257726 BAA30409 1 252 DBREF 1WZN B 1 252 GB 3257726 BAA30409 1 252 DBREF 1WZN C 1 252 GB 3257726 BAA30409 1 252 SEQRES 1 A 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 A 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 A 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 A 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 A 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 A 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 A 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 A 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 A 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 A 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 A 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 A 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 A 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 A 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 A 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 A 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 A 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 A 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 A 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 A 252 ILE ALA LYS SER PHE SEQRES 1 B 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 B 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 B 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 B 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 B 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 B 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 B 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 B 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 B 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 B 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 B 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 B 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 B 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 B 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 B 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 B 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 B 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 B 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 B 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 B 252 ILE ALA LYS SER PHE SEQRES 1 C 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 C 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 C 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 C 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 C 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 C 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 C 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 C 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 C 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 C 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 C 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 C 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 C 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 C 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 C 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 C 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 C 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 C 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 C 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 C 252 ILE ALA LYS SER PHE HET SO4 A1004 5 HET MG A1007 1 HET SAH A1001 26 HET SO4 B1005 5 HET SAH B1002 26 HET SO4 C1006 5 HET SAH C1003 26 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 SAH 3(C14 H20 N6 O5 S) FORMUL 11 HOH *615(H2 O) HELIX 1 1 TYR A 2 THR A 6 5 5 HELIX 2 2 LEU A 8 GLU A 10 5 3 HELIX 3 3 TYR A 11 TYR A 16 1 6 HELIX 4 4 TYR A 16 ARG A 22 1 7 HELIX 5 5 ARG A 22 ASP A 37 1 16 HELIX 6 6 GLY A 53 ARG A 62 1 10 HELIX 7 7 HIS A 72 ARG A 86 1 15 HELIX 8 8 ASP A 96 ILE A 100 5 5 HELIX 9 9 SER A 114 PHE A 119 5 6 HELIX 10 10 ASP A 120 ALA A 134 1 15 HELIX 11 11 THR A 211 GLU A 220 1 10 HELIX 12 12 TYR B 2 THR B 6 5 5 HELIX 13 13 LEU B 8 GLU B 10 5 3 HELIX 14 14 TYR B 11 TYR B 16 1 6 HELIX 15 15 TYR B 16 ARG B 22 1 7 HELIX 16 16 ARG B 22 ASP B 37 1 16 HELIX 17 17 GLY B 53 ARG B 62 1 10 HELIX 18 18 HIS B 72 ARG B 86 1 15 HELIX 19 19 ASP B 96 ILE B 100 5 5 HELIX 20 20 SER B 114 PHE B 119 5 6 HELIX 21 21 ASP B 120 ALA B 134 1 15 HELIX 22 22 THR B 211 LYS B 221 1 11 HELIX 23 23 TYR C 2 THR C 6 5 5 HELIX 24 24 LEU C 8 GLU C 10 5 3 HELIX 25 25 TYR C 11 TYR C 16 1 6 HELIX 26 26 TYR C 16 ARG C 22 1 7 HELIX 27 27 ARG C 22 ASP C 37 1 16 HELIX 28 28 GLY C 53 ARG C 62 1 10 HELIX 29 29 HIS C 72 ARG C 86 1 15 HELIX 30 30 ASP C 96 ILE C 100 5 5 HELIX 31 31 SER C 114 PHE C 119 5 6 HELIX 32 32 ASP C 120 ALA C 134 1 15 HELIX 33 33 THR C 211 GLU C 220 1 10 SHEET 1 A 7 GLU A 91 GLN A 94 0 SHEET 2 A 7 GLU A 65 ASP A 70 1 N GLY A 68 O LEU A 93 SHEET 3 A 7 ARG A 44 LEU A 48 1 N ASP A 47 O VAL A 67 SHEET 4 A 7 PHE A 106 MET A 111 1 O THR A 110 N LEU A 48 SHEET 5 A 7 LEU A 135 PRO A 146 1 O LYS A 136 N PHE A 106 SHEET 6 A 7 ARG A 242 ILE A 248 -1 O TYR A 243 N PHE A 145 SHEET 7 A 7 LYS A 225 GLY A 230 -1 N LYS A 225 O ILE A 248 SHEET 1 B 4 VAL A 157 LYS A 163 0 SHEET 2 B 4 GLU A 166 GLU A 177 -1 O ILE A 170 N TRP A 159 SHEET 3 B 4 LYS A 182 LEU A 192 -1 O LEU A 192 N LYS A 167 SHEET 4 B 4 VAL A 198 ASN A 208 -1 O LEU A 207 N LEU A 183 SHEET 1 C 7 GLU B 91 GLN B 94 0 SHEET 2 C 7 GLU B 65 ASP B 70 1 N GLY B 68 O LEU B 93 SHEET 3 C 7 ARG B 44 LEU B 48 1 N ASP B 47 O VAL B 67 SHEET 4 C 7 PHE B 106 MET B 111 1 O THR B 110 N LEU B 46 SHEET 5 C 7 LEU B 135 PRO B 146 1 O ILE B 142 N VAL B 109 SHEET 6 C 7 ARG B 242 ILE B 248 -1 O TYR B 243 N PHE B 145 SHEET 7 C 7 LYS B 225 GLY B 230 -1 N LYS B 225 O ILE B 248 SHEET 1 D 4 VAL B 157 LYS B 163 0 SHEET 2 D 4 GLU B 166 GLU B 177 -1 O ILE B 170 N TRP B 159 SHEET 3 D 4 LYS B 182 LEU B 192 -1 O LEU B 192 N LYS B 167 SHEET 4 D 4 VAL B 198 ASN B 208 -1 O LEU B 207 N LEU B 183 SHEET 1 E 7 GLU C 91 GLN C 94 0 SHEET 2 E 7 GLU C 65 ASP C 70 1 N GLY C 68 O LEU C 93 SHEET 3 E 7 ARG C 44 LEU C 48 1 N VAL C 45 O GLU C 65 SHEET 4 E 7 PHE C 106 MET C 111 1 O THR C 110 N LEU C 48 SHEET 5 E 7 LEU C 135 PRO C 146 1 O VAL C 140 N VAL C 109 SHEET 6 E 7 ARG C 242 ILE C 248 -1 O TYR C 243 N PHE C 145 SHEET 7 E 7 LYS C 225 GLY C 230 -1 N LYS C 225 O ILE C 248 SHEET 1 F 4 VAL C 157 LYS C 163 0 SHEET 2 F 4 GLU C 166 GLU C 177 -1 O LEU C 168 N GLU C 161 SHEET 3 F 4 LYS C 182 LEU C 192 -1 O LEU C 192 N LYS C 167 SHEET 4 F 4 VAL C 198 ASN C 208 -1 O LEU C 207 N LEU C 183 LINK OD2 ASP A 120 MG MG A1007 1555 1555 2.37 LINK MG MG A1007 O HOH A1062 1555 1555 2.00 LINK MG MG A1007 O HOH A1181 1555 1555 2.10 CISPEP 1 GLY C 155 PRO C 156 0 0.00 SITE 1 AC1 5 ARG A 77 ARG A 81 HOH A1035 HOH A1132 SITE 2 AC1 5 HOH A1229 SITE 1 AC2 5 ARG B 77 ARG B 81 HOH B1023 HOH B1082 SITE 2 AC2 5 HOH B1192 SITE 1 AC3 5 ARG C 77 ARG C 81 HOH C1034 HOH C1125 SITE 2 AC3 5 HOH C1132 SITE 1 AC4 3 ASP A 120 HOH A1062 HOH A1181 SITE 1 AC5 22 TYR A 5 TYR A 12 ARG A 19 ALA A 49 SITE 2 AC5 22 CYS A 50 GLY A 51 PRO A 55 ASP A 70 SITE 3 AC5 22 LEU A 71 HIS A 72 MET A 75 GLY A 95 SITE 4 AC5 22 ASP A 96 VAL A 97 PHE A 112 PHE A 113 SITE 5 AC5 22 THR A 115 PHE A 119 HOH A1008 HOH A1009 SITE 6 AC5 22 HOH A1010 HOH A1060 SITE 1 AC6 23 TYR B 5 TYR B 12 ARG B 19 ALA B 49 SITE 2 AC6 23 CYS B 50 GLY B 51 PRO B 55 ASP B 70 SITE 3 AC6 23 LEU B 71 HIS B 72 MET B 75 GLY B 95 SITE 4 AC6 23 ASP B 96 VAL B 97 PHE B 112 PHE B 113 SITE 5 AC6 23 THR B 115 PHE B 119 HOH B1006 HOH B1008 SITE 6 AC6 23 HOH B1013 HOH B1094 HOH B1098 SITE 1 AC7 23 TYR C 5 TYR C 12 ARG C 19 ALA C 49 SITE 2 AC7 23 CYS C 50 GLY C 51 PRO C 55 ASP C 70 SITE 3 AC7 23 LEU C 71 HIS C 72 MET C 75 GLY C 95 SITE 4 AC7 23 ASP C 96 VAL C 97 PHE C 112 PHE C 113 SITE 5 AC7 23 THR C 115 PHE C 119 HOH C1007 HOH C1008 SITE 6 AC7 23 HOH C1023 HOH C1049 HOH C1105 CRYST1 108.357 132.011 145.991 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006850 0.00000