PDB Short entry for 1X7P HEADER TRANSFERASE 16-AUG-04 1X7P TITLE CRYSTAL STRUCTURE OF THE SPOU METHYLTRANSFERASE AVIRB FROM TITLE 2 STREPTOMYCES VIRIDOCHROMOGENES IN COMPLEX WITH THE COFACTOR ADOMET COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AVIRB; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VIRIDOCHROMOGENES; SOURCE 3 ORGANISM_TAXID: 1938; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX 4T1 KEYWDS SPOU, C-TERMINAL KNOT, BOUND COFACTOR ADOMET, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.G.MOSBACHER,A.BECHTHOLD,G.E.SCHULZ REVDAT 6 13-MAR-24 1X7P 1 REMARK REVDAT 5 11-OCT-17 1X7P 1 REMARK REVDAT 4 16-APR-14 1X7P 1 REMARK REVDAT 3 13-JUL-11 1X7P 1 VERSN REVDAT 2 24-FEB-09 1X7P 1 VERSN REVDAT 1 25-JAN-05 1X7P 0 JRNL AUTH T.G.MOSBACHER,A.BECHTHOLD,G.E.SCHULZ JRNL TITL STRUCTURE AND FUNCTION OF THE ANTIBIOTIC JRNL TITL 2 RESISTANCE-MEDIATING METHYLTRANSFERASE AVIRB FROM JRNL TITL 3 STREPTOMYCES VIRIDOCHROMOGENES JRNL REF J.MOL.BIOL. V. 345 535 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15581897 JRNL DOI 10.1016/J.JMB.2004.10.051 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 55.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.536 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4096 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3806 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5583 ; 1.426 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8781 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 6.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4574 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 833 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 865 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4298 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2550 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2590 ; 0.452 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4161 ; 0.857 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 1.315 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 2.312 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7618 10.4457 103.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1610 REMARK 3 T33: 0.2099 T12: 0.0275 REMARK 3 T13: 0.0620 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.6100 L22: 3.3989 REMARK 3 L33: 7.2491 L12: 0.8495 REMARK 3 L13: -1.0837 L23: -2.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.3526 S13: -0.5294 REMARK 3 S21: 0.0605 S22: 0.0482 S23: 0.2107 REMARK 3 S31: 0.9728 S32: -0.1192 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0122 22.3214 86.0701 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0635 REMARK 3 T33: 0.0678 T12: 0.0089 REMARK 3 T13: 0.0100 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.8615 L22: 2.6039 REMARK 3 L33: 2.0804 L12: 0.2080 REMARK 3 L13: -0.8412 L23: -0.8545 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.1496 S13: 0.2950 REMARK 3 S21: -0.0698 S22: 0.0091 S23: -0.1200 REMARK 3 S31: -0.0594 S32: 0.1341 S33: -0.0360 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 65 REMARK 3 RESIDUE RANGE : B 68 B 94 REMARK 3 RESIDUE RANGE : B 103 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8779 -11.5570 72.9946 REMARK 3 T TENSOR REMARK 3 T11: 0.8106 T22: 0.3210 REMARK 3 T33: 0.4541 T12: -0.2907 REMARK 3 T13: 0.0027 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 4.9339 L22: 3.3467 REMARK 3 L33: 7.4895 L12: 0.4104 REMARK 3 L13: 2.9580 L23: -1.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.2204 S13: -0.7095 REMARK 3 S21: -0.5876 S22: 0.4406 S23: 0.6375 REMARK 3 S31: 1.5479 S32: -0.9786 S33: -0.4647 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 281 REMARK 3 ORIGIN FOR THE GROUP (A): 59.4520 2.1575 92.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1976 REMARK 3 T33: 0.1277 T12: 0.0840 REMARK 3 T13: 0.0358 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.7703 L22: 4.0231 REMARK 3 L33: 2.8477 L12: 0.6432 REMARK 3 L13: 0.3373 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.5378 S13: -0.3594 REMARK 3 S21: 0.4166 S22: -0.0536 S23: -0.1948 REMARK 3 S31: 0.5580 S32: 0.2657 S33: 0.1237 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, MES, PH 4.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.90900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.44050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.44050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.45450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.44050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.44050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.36350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.44050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.44050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.45450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.44050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.44050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 157.36350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.90900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL DIMER IN ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 ARG A 14 REMARK 465 ILE A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 THR A 283 REMARK 465 ALA A 284 REMARK 465 THR A 285 REMARK 465 THR A 286 REMARK 465 PRO A 287 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 ARG B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 ARG B 13 REMARK 465 ARG B 14 REMARK 465 ILE B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 66 REMARK 465 GLN B 67 REMARK 465 GLU B 95 REMARK 465 LEU B 96 REMARK 465 GLY B 97 REMARK 465 GLU B 98 REMARK 465 LYS B 99 REMARK 465 ASN B 100 REMARK 465 GLU B 101 REMARK 465 ALA B 102 REMARK 465 ARG B 282 REMARK 465 THR B 283 REMARK 465 ALA B 284 REMARK 465 THR B 285 REMARK 465 THR B 286 REMARK 465 PRO B 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 65 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 247 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 105.06 36.40 REMARK 500 GLU A 98 30.93 -154.43 REMARK 500 LYS A 99 43.43 12.88 REMARK 500 ASN A 100 -33.31 -174.77 REMARK 500 ALA A 102 95.34 85.99 REMARK 500 HIS A 160 55.09 -114.60 REMARK 500 ALA A 161 -117.23 -104.08 REMARK 500 ALA A 258 -94.97 -82.35 REMARK 500 ILE A 279 91.89 -63.92 REMARK 500 SER A 280 92.75 -42.86 REMARK 500 ALA B 20 -58.02 -140.75 REMARK 500 ASN B 31 147.88 -13.75 REMARK 500 GLU B 69 -82.53 -36.12 REMARK 500 LEU B 70 110.55 64.00 REMARK 500 THR B 80 -42.83 -130.52 REMARK 500 ASP B 211 142.02 -170.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 67 ARG A 68 -146.17 REMARK 500 ILE A 279 SER A 280 -145.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X7O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SPOU METHYLTRANSFERASE AVIRB FROM REMARK 900 STREPTOMYCES VIRIDOCHROMOGENES DBREF 1X7P A 1 287 UNP Q9F5K6 Q9F5K6_STRVR 1 287 DBREF 1X7P B 1 287 UNP Q9F5K6 Q9F5K6_STRVR 1 287 SEQRES 1 A 287 MET ALA ARG SER ARG GLY GLU ARG THR PRO ALA ALA ARG SEQRES 2 A 287 ARG ILE THR SER ARG ASN ALA ARG PHE GLN GLN TRP GLN SEQRES 3 A 287 ALA LEU LEU GLY ASN ARG ASN LYS ARG THR ARG ALA GLY SEQRES 4 A 287 GLU PHE LEU VAL MET GLY VAL ARG PRO ILE SER LEU ALA SEQRES 5 A 287 VAL GLU HIS GLY TRP PRO VAL ARG THR LEU LEU TYR ASP SEQRES 6 A 287 GLY GLN ARG GLU LEU SER LYS TRP ALA ARG GLU LEU LEU SEQRES 7 A 287 ARG THR VAL ARG THR GLU GLN ILE ALA MET ALA PRO ASP SEQRES 8 A 287 LEU LEU MET GLU LEU GLY GLU LYS ASN GLU ALA PRO PRO SEQRES 9 A 287 GLU VAL VAL ALA VAL VAL GLU MET PRO ALA ASP ASP LEU SEQRES 10 A 287 ASP ARG ILE PRO VAL ARG GLU ASP PHE LEU GLY VAL LEU SEQRES 11 A 287 PHE ASP ARG PRO THR SER PRO GLY ASN ILE GLY SER ILE SEQRES 12 A 287 ILE ARG SER ALA ASP ALA LEU GLY ALA HIS GLY LEU ILE SEQRES 13 A 287 VAL ALA GLY HIS ALA ALA ASP VAL TYR ASP PRO LYS SER SEQRES 14 A 287 VAL ARG SER SER THR GLY SER LEU PHE SER LEU PRO ALA SEQRES 15 A 287 VAL ARG VAL PRO SER PRO GLY GLU VAL MET ASP TRP VAL SEQRES 16 A 287 GLU ALA ARG ARG ALA ALA GLY THR PRO ILE VAL LEU VAL SEQRES 17 A 287 GLY THR ASP GLU HIS GLY ASP CYS ASP VAL PHE ASP PHE SEQRES 18 A 287 ASP PHE THR GLN PRO THR LEU LEU LEU ILE GLY ASN GLU SEQRES 19 A 287 THR ALA GLY LEU SER ASN ALA TRP ARG THR LEU CYS ASP SEQRES 20 A 287 TYR THR VAL SER ILE PRO MET ALA GLY SER ALA SER SER SEQRES 21 A 287 LEU ASN ALA ALA ASN ALA ALA THR ALA ILE LEU TYR GLU SEQRES 22 A 287 ALA VAL ARG GLN ARG ILE SER GLY ARG THR ALA THR THR SEQRES 23 A 287 PRO SEQRES 1 B 287 MET ALA ARG SER ARG GLY GLU ARG THR PRO ALA ALA ARG SEQRES 2 B 287 ARG ILE THR SER ARG ASN ALA ARG PHE GLN GLN TRP GLN SEQRES 3 B 287 ALA LEU LEU GLY ASN ARG ASN LYS ARG THR ARG ALA GLY SEQRES 4 B 287 GLU PHE LEU VAL MET GLY VAL ARG PRO ILE SER LEU ALA SEQRES 5 B 287 VAL GLU HIS GLY TRP PRO VAL ARG THR LEU LEU TYR ASP SEQRES 6 B 287 GLY GLN ARG GLU LEU SER LYS TRP ALA ARG GLU LEU LEU SEQRES 7 B 287 ARG THR VAL ARG THR GLU GLN ILE ALA MET ALA PRO ASP SEQRES 8 B 287 LEU LEU MET GLU LEU GLY GLU LYS ASN GLU ALA PRO PRO SEQRES 9 B 287 GLU VAL VAL ALA VAL VAL GLU MET PRO ALA ASP ASP LEU SEQRES 10 B 287 ASP ARG ILE PRO VAL ARG GLU ASP PHE LEU GLY VAL LEU SEQRES 11 B 287 PHE ASP ARG PRO THR SER PRO GLY ASN ILE GLY SER ILE SEQRES 12 B 287 ILE ARG SER ALA ASP ALA LEU GLY ALA HIS GLY LEU ILE SEQRES 13 B 287 VAL ALA GLY HIS ALA ALA ASP VAL TYR ASP PRO LYS SER SEQRES 14 B 287 VAL ARG SER SER THR GLY SER LEU PHE SER LEU PRO ALA SEQRES 15 B 287 VAL ARG VAL PRO SER PRO GLY GLU VAL MET ASP TRP VAL SEQRES 16 B 287 GLU ALA ARG ARG ALA ALA GLY THR PRO ILE VAL LEU VAL SEQRES 17 B 287 GLY THR ASP GLU HIS GLY ASP CYS ASP VAL PHE ASP PHE SEQRES 18 B 287 ASP PHE THR GLN PRO THR LEU LEU LEU ILE GLY ASN GLU SEQRES 19 B 287 THR ALA GLY LEU SER ASN ALA TRP ARG THR LEU CYS ASP SEQRES 20 B 287 TYR THR VAL SER ILE PRO MET ALA GLY SER ALA SER SER SEQRES 21 B 287 LEU ASN ALA ALA ASN ALA ALA THR ALA ILE LEU TYR GLU SEQRES 22 B 287 ALA VAL ARG GLN ARG ILE SER GLY ARG THR ALA THR THR SEQRES 23 B 287 PRO HET SAM A 301 27 HET SAM B 302 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *83(H2 O) HELIX 1 1 ASN A 19 ALA A 27 1 9 HELIX 2 2 ASN A 31 GLY A 39 1 9 HELIX 3 3 GLY A 45 HIS A 55 1 11 HELIX 4 4 SER A 71 VAL A 81 1 11 HELIX 5 5 ALA A 89 MET A 94 1 6 HELIX 6 6 ASP A 116 ILE A 120 5 5 HELIX 7 7 SER A 136 LEU A 150 1 15 HELIX 8 8 ASP A 166 SER A 173 1 8 HELIX 9 9 GLY A 175 SER A 179 5 5 HELIX 10 10 SER A 187 ALA A 201 1 15 HELIX 11 11 PHE A 219 PHE A 221 5 3 HELIX 12 12 SER A 239 CYS A 246 1 8 HELIX 13 13 ASN A 262 ILE A 279 1 18 HELIX 14 14 ALA B 20 GLY B 30 1 11 HELIX 15 15 ASN B 31 GLY B 39 1 9 HELIX 16 16 GLY B 45 HIS B 55 1 11 HELIX 17 17 SER B 71 ARG B 79 1 9 HELIX 18 18 PRO B 90 MET B 94 5 5 HELIX 19 19 ASP B 116 ILE B 120 5 5 HELIX 20 20 SER B 136 LEU B 150 1 15 HELIX 21 21 ASP B 166 THR B 174 1 9 HELIX 22 22 GLY B 175 SER B 179 5 5 HELIX 23 23 SER B 187 ALA B 201 1 15 HELIX 24 24 PHE B 219 PHE B 221 5 3 HELIX 25 25 SER B 239 CYS B 246 1 8 HELIX 26 26 ASN B 262 GLY B 281 1 20 SHEET 1 A 4 GLU A 40 MET A 44 0 SHEET 2 A 4 VAL A 106 GLU A 111 -1 O VAL A 110 N PHE A 41 SHEET 3 A 4 VAL A 59 ASP A 65 -1 N THR A 61 O VAL A 109 SHEET 4 A 4 GLU A 84 MET A 88 1 O GLU A 84 N LEU A 62 SHEET 1 B 7 ALA A 182 VAL A 185 0 SHEET 2 B 7 GLY A 154 ALA A 158 1 N LEU A 155 O VAL A 183 SHEET 3 B 7 LEU A 127 ASP A 132 1 N PHE A 131 O ILE A 156 SHEET 4 B 7 THR A 227 ILE A 231 1 O ILE A 231 N LEU A 130 SHEET 5 B 7 VAL A 206 THR A 210 1 N VAL A 208 O LEU A 228 SHEET 6 B 7 TYR A 248 SER A 251 1 O TYR A 248 N GLY A 209 SHEET 7 B 7 CYS A 216 ASP A 217 1 N CYS A 216 O SER A 251 SHEET 1 C 4 GLU B 40 MET B 44 0 SHEET 2 C 4 VAL B 106 GLU B 111 -1 O ALA B 108 N VAL B 43 SHEET 3 C 4 VAL B 59 TYR B 64 -1 N LEU B 63 O VAL B 107 SHEET 4 C 4 GLU B 84 ALA B 87 1 O ILE B 86 N LEU B 62 SHEET 1 D 7 ALA B 182 VAL B 185 0 SHEET 2 D 7 GLY B 154 ALA B 158 1 N VAL B 157 O VAL B 185 SHEET 3 D 7 LEU B 127 ASP B 132 1 N PHE B 131 O ILE B 156 SHEET 4 D 7 THR B 227 ILE B 231 1 O ILE B 231 N LEU B 130 SHEET 5 D 7 VAL B 206 THR B 210 1 N VAL B 208 O LEU B 228 SHEET 6 D 7 TYR B 248 SER B 251 1 O VAL B 250 N GLY B 209 SHEET 7 D 7 CYS B 216 ASP B 217 1 N CYS B 216 O SER B 251 SITE 1 AC1 19 ARG A 75 THR A 210 ASP A 211 GLU A 212 SITE 2 AC1 19 ILE A 231 GLY A 232 ASN A 233 GLU A 234 SITE 3 AC1 19 THR A 235 ALA A 236 GLY A 237 SER A 251 SITE 4 AC1 19 ILE A 252 MET A 254 LEU A 261 ALA A 263 SITE 5 AC1 19 ALA A 266 HOH A 359 ARG B 145 SITE 1 AC2 17 ARG A 145 ARG B 79 THR B 210 ASP B 211 SITE 2 AC2 17 GLU B 212 GLY B 232 ASN B 233 GLU B 234 SITE 3 AC2 17 ALA B 236 GLY B 237 SER B 251 ILE B 252 SITE 4 AC2 17 MET B 254 LEU B 261 ALA B 263 ALA B 266 SITE 5 AC2 17 HOH B 322 CRYST1 76.881 76.881 209.818 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004766 0.00000