PDB Short entry for 1XFT HEADER HYDROLASE 15-SEP-04 1XFT TITLE SYNCHROTRON X-RAY POWDER DIFFRACTION STUDY OF HEXAGONAL TURKEY EGG- TITLE 2 WHITE LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LYSOZYME; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 3 ORGANISM_COMMON: TURKEY; SOURCE 4 ORGANISM_TAXID: 9103; SOURCE 5 TISSUE: EGG WHITE; SOURCE 6 OTHER_DETAILS: SIGMA-ALDRICH CHEMICAL COMPANY LOT. 064H7230 KEYWDS POWDER DIFFRACTION, LYSOZYME, X-RAYS, HYDROLASE EXPDTA POWDER DIFFRACTION AUTHOR I.MARGIOLAKI,J.P.WRIGHT REVDAT 4 25-OCT-23 1XFT 1 REMARK REVDAT 3 11-OCT-17 1XFT 1 REMARK REVDAT 2 24-FEB-09 1XFT 1 VERSN REVDAT 1 05-APR-05 1XFT 0 JRNL AUTH I.MARGIOLAKI,J.P.WRIGHT,A.N.FITCH,G.C.FOX,R.B.VON DREELE JRNL TITL SYNCHROTRON X-RAY POWDER DIFFRACTION STUDY OF HEXAGONAL JRNL TITL 2 TURKEY EGG-WHITE LYSOZYME. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 423 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15805597 JRNL DOI 10.1107/S0907444905001393 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.B.VON DREELE REMARK 1 TITL BINDING OF N-ACETYLGLUCOSAMINE TO CHICKEN EGG LYSOZYME: A REMARK 1 TITL 2 POWDER DIFFRACTION STUDY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 1836 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11717496 REMARK 1 DOI 10.1107/S0907444901015748 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.L.HOWELL REMARK 1 TITL STRUCTURE OF HEXAGONAL TURKEY EGG-WHITE LYSOZYME AT 1.65A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 654 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15299795 REMARK 1 DOI 10.1107/S0907444994013612 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.HARATA REMARK 1 TITL X-RAY STRUCTURE OF MONOCLINIC TURKEY EGG LYSOZYME AT 1.3 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 497 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15299509 REMARK 1 DOI 10.1107/S0907444993005542 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.L.HOWELL,S.C.ALMO,M.R.PARSONS,J.HAJDU,G.A.PETSKO REMARK 1 TITL STRUCTURE DETERMINATION OF TURKEY EGG-WHITE LYSOZYME USING REMARK 1 TITL 2 LAUE DIFFRACTION DATA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 48 200 1992 REMARK 1 REFN ISSN 0108-7681 REMARK 1 PMID 1515108 REMARK 1 DOI 10.1107/S0108768191012466 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 4 REMARK 4 1XFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030314. REMARK 250 REMARK 250 EXPERIMENTAL DETAILS REMARK 250 EXPERIMENT TYPE : POWDER DIFFRACTION REMARK 250 DATE OF DATA COLLECTION : 03-DEC-03 REMARK 250 REMARK 250 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 54 NE2 GLN A 57 2.09 REMARK 500 O VAL A 109 N ASN A 113 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 21 O GLY A 67 2665 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 -75.01 -44.10 REMARK 500 ASN A 37 18.74 52.68 REMARK 500 ARG A 61 -15.96 -43.59 REMARK 500 ALA A 82 -12.91 -36.77 REMARK 500 LEU A 84 4.85 -62.70 REMARK 500 ARG A 114 -66.69 -105.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TEW RELATED DB: PDB REMARK 900 RELATED ID: 2LZ2 RELATED DB: PDB REMARK 900 RELATED ID: 1JA6 RELATED DB: PDB DBREF 1XFT A 1 129 UNP P00703 LYC_MELGA 19 147 SEQRES 1 A 129 LYS VAL TYR GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG LEU GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR HIS ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER LYS ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE ALA SER GLY GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL HIS ALA TRP ILE ARG GLY CYS ARG LEU HELIX 1 1 GLY A 4 LEU A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 SER A 36 1 13 HELIX 4 4 CYS A 80 LEU A 84 5 5 HELIX 5 5 ILE A 88 ALA A 99 1 12 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 ARG A 114 1 7 HELIX 8 8 VAL A 120 ARG A 125 1 6 SHEET 1 A 2 ASP A 52 TYR A 53 0 SHEET 2 A 2 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 CRYST1 71.086 71.086 85.028 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014067 0.008122 0.000000 0.00000 SCALE2 0.000000 0.016244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011761 0.00000