PDB Short entry for 1XPH HEADER IMMUNE SYSTEM, SUGAR BINDING PROTEIN 08-OCT-04 1XPH TITLE STRUCTURE OF DC-SIGNR AND A PORTION OF REPEAT DOMAIN 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD209 ANTIGEN-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 250-399: CONTAINS C-TYPE LECTIN COMPND 5 DOMAIN (RESIDUES 274-390); COMPND 6 SYNONYM: DENDRITIC CELL-SPECIFIC ICAM-3 NON-INTEGRIN RELATED DC- COMPND 7 SIGNR, CARBOHYDRATE RECOGNITION DOMAIN AND REPEAT 8 OF DC-SIGNR, COMPND 8 DENDRITIC CELL-SPECIFIC ICAM-3-GRABBING NONINTEGRIN 2, DC-SIGN2, DC- COMPND 9 SIGN RELATED PROTEIN, DC-SIGNR, LIVER/LYMPH NODE SPECIFIC ICAM-3- COMPND 10 GRABBING NONINTEGRIN, L-SIGN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS C-TYPE LECTIN, CARBOHYDRATE RECOGNITION DOMAIN, REPEAT DOMAIN, IMMUNE KEYWDS 2 SYSTEM, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.A.SNYDER,M.COLONNA,P.D.SUN REVDAT 3 23-AUG-23 1XPH 1 REMARK LINK REVDAT 2 24-FEB-09 1XPH 1 VERSN REVDAT 1 19-APR-05 1XPH 0 JRNL AUTH G.A.SNYDER,M.COLONNA,P.D.SUN JRNL TITL THE STRUCTURE OF DC-SIGNR WITH A PORTION OF ITS REPEAT JRNL TITL 2 DOMAIN LENDS INSIGHTS TO MODELING OF THE RECEPTOR TETRAMER. JRNL REF J.MOL.BIOL. V. 347 979 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15784257 JRNL DOI 10.1016/J.JMB.2005.01.063 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1174 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 931 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1591 ; 1.366 ; 1.880 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2166 ; 0.828 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 137 ; 6.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1351 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 270 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 256 ; 0.319 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1149 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 618 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.367 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 689 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1100 ; 1.795 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 485 ; 2.491 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 491 ; 3.975 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 31.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1K9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MGCL2, 100MM NA CACODYLATE, 12% REMARK 280 PEG 3000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.11650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.44350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.11650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.44350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 250 REMARK 465 TYR A 251 REMARK 465 GLN A 252 REMARK 465 GLU A 253 REMARK 465 LEU A 254 REMARK 465 THR A 255 REMARK 465 ASP A 256 REMARK 465 LEU A 257 REMARK 465 LYS A 258 REMARK 465 THR A 259 REMARK 465 GLU A 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 398 CG ASP A 398 OD2 -0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 282 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 MET A 282 CG - SD - CE ANGL. DEV. = 21.8 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 398 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 398 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 398 OD1 - CG - OD2 ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP A 398 CB - CG - OD2 ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP A 398 CA - C - O ANGL. DEV. = -27.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 19 O REMARK 620 2 GLU A 359 OE1 51.8 REMARK 620 3 GLU A 359 OE2 88.0 40.6 REMARK 620 4 ASN A 361 OD1 90.7 71.8 85.9 REMARK 620 5 GLU A 366 OE1 96.7 141.8 173.9 90.2 REMARK 620 6 ASP A 378 O 88.6 110.8 98.2 175.8 85.7 REMARK 620 7 ASP A 378 OD1 168.5 120.5 82.1 94.5 93.6 87.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 DBREF 1XPH A 250 399 UNP Q9H2X3 209L1_HUMAN 250 399 SEQRES 1 A 150 ILE TYR GLN GLU LEU THR ASP LEU LYS THR ALA PHE GLU SEQRES 2 A 150 ARG LEU CYS ARG HIS CYS PRO LYS ASP TRP THR PHE PHE SEQRES 3 A 150 GLN GLY ASN CYS TYR PHE MET SER ASN SER GLN ARG ASN SEQRES 4 A 150 TRP HIS ASP SER VAL THR ALA CYS GLN GLU VAL ARG ALA SEQRES 5 A 150 GLN LEU VAL VAL ILE LYS THR ALA GLU GLU GLN ASN PHE SEQRES 6 A 150 LEU GLN LEU GLN THR SER ARG SER ASN ARG PHE SER TRP SEQRES 7 A 150 MET GLY LEU SER ASP LEU ASN GLN GLU GLY THR TRP GLN SEQRES 8 A 150 TRP VAL ASP GLY SER PRO LEU SER PRO SER PHE GLN ARG SEQRES 9 A 150 TYR TRP ASN SER GLY GLU PRO ASN ASN SER GLY ASN GLU SEQRES 10 A 150 ASP CYS ALA GLU PHE SER GLY SER GLY TRP ASN ASP ASN SEQRES 11 A 150 ARG CYS ASP VAL ASP ASN TYR TRP ILE CYS LYS LYS PRO SEQRES 12 A 150 ALA ALA CYS PHE ARG ASP GLU HET CA A 402 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *103(H2 O) HELIX 1 1 PHE A 261 CYS A 265 5 5 HELIX 2 2 ASN A 288 VAL A 299 1 12 HELIX 3 3 THR A 308 ASN A 323 1 16 HELIX 4 4 SER A 348 TRP A 355 5 8 SHEET 1 A 5 THR A 273 PHE A 275 0 SHEET 2 A 5 ASN A 278 MET A 282 -1 O ASN A 278 N PHE A 275 SHEET 3 A 5 TYR A 386 PRO A 392 -1 O LYS A 391 N CYS A 279 SHEET 4 A 5 SER A 326 SER A 331 1 N TRP A 327 O TYR A 386 SHEET 5 A 5 GLN A 340 TRP A 341 -1 O GLN A 340 N SER A 331 SHEET 1 B 5 GLN A 302 LEU A 303 0 SHEET 2 B 5 TYR A 386 PRO A 392 -1 O LYS A 390 N GLN A 302 SHEET 3 B 5 SER A 326 SER A 331 1 N TRP A 327 O TYR A 386 SHEET 4 B 5 CYS A 368 SER A 372 -1 O PHE A 371 N SER A 326 SHEET 5 B 5 GLY A 375 ASN A 379 -1 O GLY A 375 N SER A 372 SSBOND 1 CYS A 265 CYS A 395 1555 1555 2.05 SSBOND 2 CYS A 268 CYS A 279 1555 1555 2.05 SSBOND 3 CYS A 296 CYS A 389 1555 1555 2.10 SSBOND 4 CYS A 368 CYS A 381 1555 1555 2.04 LINK O HOH A 19 CA CA A 402 1555 1555 2.04 LINK OE1 GLU A 359 CA CA A 402 1555 1555 3.37 LINK OE2 GLU A 359 CA CA A 402 1555 1555 2.14 LINK OD1 ASN A 361 CA CA A 402 1555 1555 2.04 LINK OE1 GLU A 366 CA CA A 402 1555 1555 2.03 LINK O ASP A 378 CA CA A 402 1555 1555 2.10 LINK OD1 ASP A 378 CA CA A 402 1555 1555 2.02 CISPEP 1 GLU A 359 PRO A 360 0 -7.84 SITE 1 AC1 5 HOH A 19 GLU A 359 ASN A 361 GLU A 366 SITE 2 AC1 5 ASP A 378 CRYST1 38.233 54.887 62.352 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016038 0.00000