PDB Short entry for 1XPP HEADER TRANSFERASE 09-OCT-04 1XPP TITLE CRYSTAL STRUCTURE OF TA1416,DNA-DIRECTED RNA POLYMERASE SUBUNIT L, TITLE 2 FROM THERMOPLASMA ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TA1416; COMPND 5 EC: 2.7.7.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: RPOL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET15B KEYWDS STRUCTURAL GENOMICS, DNA-DIRECTED RNA POLYMERASE, THERMOPLASMA KEYWDS 2 ACIDOPHILUM, PROTEIN STRUCTURE INITIATIVE, MCSG, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 14-FEB-24 1XPP 1 REMARK SEQADV REVDAT 4 26-SEP-12 1XPP 1 AUTHOR VERSN REVDAT 3 24-FEB-09 1XPP 1 VERSN REVDAT 2 18-JAN-05 1XPP 1 KEYWDS REMARK REVDAT 1 23-NOV-04 1XPP 0 JRNL AUTH Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF TA1416, DNA-DIRECTED RNA POLYMERASE JRNL TITL 2 SUBUNIT L, FROM THERMOPLASMA ACIDOPHILUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 51951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3729 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5029 ; 1.417 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;37.347 ;24.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 759 ;16.723 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1811 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 337 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 130 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2187 ; 0.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3576 ; 1.789 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 2.620 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1438 ; 4.238 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: C-TERMINI OF MOLECULES B AND D HAVE REMARK 3 ALTERNATE CONFORMATIONS. REMARK 4 REMARK 4 1XPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-03; 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9793, 0.9794, 0.956 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2; SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60955 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 23.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM THIOCYANATE, PEG MME 2000, REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 EITHER A DIMER OR TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 MET A 106 REMARK 465 ILE A 107 REMARK 465 LYS A 108 REMARK 465 ALA A 109 REMARK 465 VAL A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 MET B 106 REMARK 465 ILE B 107 REMARK 465 LYS B 108 REMARK 465 ALA B 109 REMARK 465 VAL B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 SER B 113 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 ARG C 3 REMARK 465 GLU C 4 REMARK 465 ARG C 5 REMARK 465 THR C 6 REMARK 465 MET C 106 REMARK 465 ILE C 107 REMARK 465 LYS C 108 REMARK 465 ALA C 109 REMARK 465 VAL C 110 REMARK 465 GLU C 111 REMARK 465 GLY C 112 REMARK 465 SER C 113 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 GLN D 2 REMARK 465 ARG D 3 REMARK 465 GLU D 4 REMARK 465 ARG D 5 REMARK 465 THR D 6 REMARK 465 LYS D 108 REMARK 465 ALA D 109 REMARK 465 VAL D 110 REMARK 465 GLU D 111 REMARK 465 GLY D 112 REMARK 465 SER D 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 29 O HOH B 655 2.10 REMARK 500 ND2 ASN C 30 NH2 ARG C 34 2.15 REMARK 500 CZ ARG C 12 O HOH C 660 2.16 REMARK 500 OG SER A 74 O HOH A 656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -116.39 -131.01 REMARK 500 LYS A 18 -72.89 -81.15 REMARK 500 LYS A 18 -72.89 5.21 REMARK 500 LYS B 18 -70.74 -34.57 REMARK 500 ILE B 53 -70.98 -125.46 REMARK 500 PRO B 56 -162.17 -78.58 REMARK 500 GLU C 17 -141.28 -116.40 REMARK 500 LYS C 18 -91.97 -42.43 REMARK 500 LYS C 18 -91.97 18.49 REMARK 500 LYS D 18 -71.67 -32.73 REMARK 500 LYS D 18 -72.43 -34.04 REMARK 500 ILE D 53 -65.16 -121.14 REMARK 500 PRO D 56 -162.48 -79.66 REMARK 500 GLU D 102 2.07 -50.26 REMARK 500 ASP D 104 -101.19 151.00 REMARK 500 ASP D 104 120.41 25.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5039 RELATED DB: TARGETDB DBREF 1XPP A 1 111 UNP Q9HIC5 RPOL_THEAC 1 111 DBREF 1XPP B 1 111 UNP Q9HIC5 RPOL_THEAC 1 111 DBREF 1XPP C 1 111 UNP Q9HIC5 RPOL_THEAC 1 111 DBREF 1XPP D 1 111 UNP Q9HIC5 RPOL_THEAC 1 111 SEQADV 1XPP GLY A -1 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP HIS A 0 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY A 112 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP SER A 113 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY B -1 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP HIS B 0 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY B 112 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP SER B 113 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY C -1 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP HIS C 0 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY C 112 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP SER C 113 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY D -1 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP HIS D 0 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP GLY D 112 UNP Q9HIC5 CLONING ARTIFACT SEQADV 1XPP SER D 113 UNP Q9HIC5 CLONING ARTIFACT SEQRES 1 A 115 GLY HIS MET GLN ARG GLU ARG THR ALA GLU SER SER LEU SEQRES 2 A 115 ARG VAL ILE SER LYS GLU LYS ASN SER ILE THR VAL GLU SEQRES 3 A 115 MET ILE ASN TYR ASP ASN THR LEU LEU ARG THR LEU VAL SEQRES 4 A 115 GLU GLU ILE LEU LYS ASP ASP GLN VAL ASP GLU ALA ARG SEQRES 5 A 115 TYR TYR ILE LYS HIS PRO VAL ILE ASP ASN PRO GLN ILE SEQRES 6 A 115 TYR VAL ARG VAL LYS SER GLY LYS PRO GLN SER ALA ILE SEQRES 7 A 115 LYS ARG ALA VAL ARG LYS LEU SER LYS LEU TYR GLU ASP SEQRES 8 A 115 LEU GLY THR GLN PHE GLN LYS GLU PHE GLN ARG TYR GLU SEQRES 9 A 115 SER ASP HIS MET ILE LYS ALA VAL GLU GLY SER SEQRES 1 B 115 GLY HIS MET GLN ARG GLU ARG THR ALA GLU SER SER LEU SEQRES 2 B 115 ARG VAL ILE SER LYS GLU LYS ASN SER ILE THR VAL GLU SEQRES 3 B 115 MET ILE ASN TYR ASP ASN THR LEU LEU ARG THR LEU VAL SEQRES 4 B 115 GLU GLU ILE LEU LYS ASP ASP GLN VAL ASP GLU ALA ARG SEQRES 5 B 115 TYR TYR ILE LYS HIS PRO VAL ILE ASP ASN PRO GLN ILE SEQRES 6 B 115 TYR VAL ARG VAL LYS SER GLY LYS PRO GLN SER ALA ILE SEQRES 7 B 115 LYS ARG ALA VAL ARG LYS LEU SER LYS LEU TYR GLU ASP SEQRES 8 B 115 LEU GLY THR GLN PHE GLN LYS GLU PHE GLN ARG TYR GLU SEQRES 9 B 115 SER ASP HIS MET ILE LYS ALA VAL GLU GLY SER SEQRES 1 C 115 GLY HIS MET GLN ARG GLU ARG THR ALA GLU SER SER LEU SEQRES 2 C 115 ARG VAL ILE SER LYS GLU LYS ASN SER ILE THR VAL GLU SEQRES 3 C 115 MET ILE ASN TYR ASP ASN THR LEU LEU ARG THR LEU VAL SEQRES 4 C 115 GLU GLU ILE LEU LYS ASP ASP GLN VAL ASP GLU ALA ARG SEQRES 5 C 115 TYR TYR ILE LYS HIS PRO VAL ILE ASP ASN PRO GLN ILE SEQRES 6 C 115 TYR VAL ARG VAL LYS SER GLY LYS PRO GLN SER ALA ILE SEQRES 7 C 115 LYS ARG ALA VAL ARG LYS LEU SER LYS LEU TYR GLU ASP SEQRES 8 C 115 LEU GLY THR GLN PHE GLN LYS GLU PHE GLN ARG TYR GLU SEQRES 9 C 115 SER ASP HIS MET ILE LYS ALA VAL GLU GLY SER SEQRES 1 D 115 GLY HIS MET GLN ARG GLU ARG THR ALA GLU SER SER LEU SEQRES 2 D 115 ARG VAL ILE SER LYS GLU LYS ASN SER ILE THR VAL GLU SEQRES 3 D 115 MET ILE ASN TYR ASP ASN THR LEU LEU ARG THR LEU VAL SEQRES 4 D 115 GLU GLU ILE LEU LYS ASP ASP GLN VAL ASP GLU ALA ARG SEQRES 5 D 115 TYR TYR ILE LYS HIS PRO VAL ILE ASP ASN PRO GLN ILE SEQRES 6 D 115 TYR VAL ARG VAL LYS SER GLY LYS PRO GLN SER ALA ILE SEQRES 7 D 115 LYS ARG ALA VAL ARG LYS LEU SER LYS LEU TYR GLU ASP SEQRES 8 D 115 LEU GLY THR GLN PHE GLN LYS GLU PHE GLN ARG TYR GLU SEQRES 9 D 115 SER ASP HIS MET ILE LYS ALA VAL GLU GLY SER HET SCN A 603 3 HET SCN B 601 3 HET ACY B 605 4 HET SCN C 602 3 HET FMT C 604 3 HETNAM SCN THIOCYANATE ION HETNAM ACY ACETIC ACID HETNAM FMT FORMIC ACID FORMUL 5 SCN 3(C N S 1-) FORMUL 7 ACY C2 H4 O2 FORMUL 9 FMT C H2 O2 FORMUL 10 HOH *381(H2 O) HELIX 1 1 ASP A 29 LEU A 41 1 13 HELIX 2 2 LYS A 71 HIS A 105 1 35 HELIX 3 3 ASP B 29 LEU B 41 1 13 HELIX 4 4 LYS B 71 HIS B 105 1 35 HELIX 5 5 ASP C 29 LEU C 41 1 13 HELIX 6 6 LYS C 71 HIS C 105 1 35 HELIX 7 7 ASP D 29 LEU D 41 1 13 HELIX 8 8 LYS D 71 ASP D 104 1 34 SHEET 1 A 4 SER A 10 LYS A 16 0 SHEET 2 A 4 SER A 20 ILE A 26 -1 O THR A 22 N ILE A 14 SHEET 3 A 4 GLN A 62 VAL A 67 -1 O ILE A 63 N VAL A 23 SHEET 4 A 4 VAL A 46 TYR A 52 -1 N ARG A 50 O TYR A 64 SHEET 1 B 4 SER B 10 GLU B 17 0 SHEET 2 B 4 SER B 20 ILE B 26 -1 O ILE B 26 N SER B 10 SHEET 3 B 4 GLN B 62 VAL B 67 -1 O ILE B 63 N VAL B 23 SHEET 4 B 4 VAL B 46 TYR B 52 -1 N ASP B 47 O ARG B 66 SHEET 1 C 4 SER C 10 LYS C 16 0 SHEET 2 C 4 SER C 20 ILE C 26 -1 O THR C 22 N ILE C 14 SHEET 3 C 4 GLN C 62 VAL C 67 -1 O ILE C 63 N VAL C 23 SHEET 4 C 4 VAL C 46 TYR C 52 -1 N ARG C 50 O TYR C 64 SHEET 1 D 4 SER D 10 GLU D 17 0 SHEET 2 D 4 SER D 20 ILE D 26 -1 O ILE D 26 N SER D 10 SHEET 3 D 4 GLN D 62 VAL D 67 -1 O ILE D 63 N VAL D 23 SHEET 4 D 4 VAL D 46 TYR D 52 -1 N ASP D 47 O ARG D 66 CISPEP 1 HIS B 55 PRO B 56 0 -2.75 CISPEP 2 HIS D 55 PRO D 56 0 -3.13 SITE 1 AC1 1 LYS B 77 SITE 1 AC2 2 TYR C 87 TYR D 87 SITE 1 AC3 6 HIS A 55 PRO A 56 VAL A 57 ILE A 58 SITE 2 AC3 6 ARG C 50 TYR C 51 SITE 1 AC4 7 ARG A 50 TYR A 52 ILE A 53 HOH A 673 SITE 2 AC4 7 ILE C 53 LYS C 54 PRO C 56 SITE 1 AC5 4 ASP A 29 GLU B 38 GLU B 39 LYS B 42 CRYST1 59.700 69.424 66.293 90.00 116.77 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016750 0.000000 0.008450 0.00000 SCALE2 0.000000 0.014404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016895 0.00000