PDB Short entry for 1XUM HEADER GLYCOPROTEIN HORMONE RECEPTOR 27-DEC-96 1XUM TITLE THEORETICAL MODEL OF THE LIGAND-BINDING REGION OF A TITLE 2 GLYCOPROTEIN HORMONE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROTROPIN RECEPTOR COMPOUND; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS GLYCOPROTEIN HORMONE RECEPTOR, GLYCOPROTEIN, PHOSPHORYLATION EXPDTA THEORETICAL MODEL AUTHOR X.JIANG,M.DREANO,D.R.BUCKLER,S.CHENG,A.YTHIER,H.WU, AUTHOR 2 W.A.HENDRICKSON,N.EL TAYAR REVDAT 2 01-APR-03 1XUM 1 JRNL REVDAT 1 15-MAY-97 1XUM 0 JRNL AUTH X.JIANG,M.DREANO,D.R.BUCKLER,S.CHENG,A.YTHIER,H.WU, JRNL AUTH 2 W.A.HENDRICKSON,N.EL TAYAR JRNL TITL STRUCTURAL PREDICTIONS FOR THE LIGAND-BINDING JRNL TITL 2 REGION OF GLYCOPROTEIN HORMONE RECEPTORS AND THE JRNL TITL 3 NATURE OF HORMONE-RECEPTOR INTERACTIONS. JRNL REF STRUCTURE V. 3 1341 1995 JRNL REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.WU,J.W.LUSTBADER,Y.LIU,R.E.CANFIELD, REMARK 1 AUTH 2 W.A.HENDRICKSON REMARK 1 TITL STRUCTURE OF HUMAN CHORIONIC GONADOTROPIN AT 2.6 A REMARK 1 TITL 2 RESOLUTION FROM MAD ANALYSIS OF THE REMARK 1 TITL 3 SELENOMETHIONYL PROTEIN REMARK 1 REF STRUCTURE (LONDON) V. 2 545 1994 REMARK 1 REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XUM COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 THE UNIVERSAL B FACTOR OF 99.00 IN THE ENTRY MEANS THE REMARK 6 DETAILED ATOMIC POSITIONS ARE NOT RELIABLE. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OE1 GLN A 90 OD1 ASN A 113 0.42 REMARK 500 CD GLN A 193 CG1 ILE A 216 0.52 REMARK 500 NH2 ARG A 109 OE1 GLU A 157 0.67 REMARK 500 CD1 PHE A 189 OD1 ASN A 210 0.67 REMARK 500 O THR A 66 CD PRO A 68 0.73 REMARK 500 CG GLN A 90 CB ASN A 113 0.76 REMARK 500 CG GLN A 193 CD1 ILE A 216 0.80 REMARK 500 CG GLN A 90 CG ASN A 113 0.87 REMARK 500 CD GLN A 90 OD1 ASN A 113 0.89 REMARK 500 CB PHE A 197 CE2 PHE A 221 0.92 REMARK 500 CD GLN A 90 CG ASN A 113 0.95 REMARK 500 O GLN A 193 CG PHE A 197 1.03 REMARK 500 CD1 LEU A 213 CG2 THR A 236 1.03 REMARK 500 CD ARG A 65 CG2 THR A 88 1.20 REMARK 500 CD1 LEU A 114 CB THR A 136 1.20 REMARK 500 CG2 ILE A 60 OG SER A 84 1.22 REMARK 500 CG2 THR A 190 CD2 TYR A 212 1.23 REMARK 500 OE1 GLN A 193 CG1 ILE A 216 1.27 REMARK 500 CD1 PHE A 189 CG ASN A 210 1.28 REMARK 500 O GLN A 193 CD1 PHE A 197 1.28 REMARK 500 NE ARG A 65 CG2 THR A 88 1.31 REMARK 500 CG ARG A 65 CB THR A 88 1.34 REMARK 500 C THR A 66 CD PRO A 68 1.34 REMARK 500 O LEU A 59 OG1 THR A 62 1.35 REMARK 500 CG2 THR A 190 O LYS A 211 1.35 REMARK 500 CE1 PHE A 189 OD1 ASN A 210 1.37 REMARK 500 CG ARG A 65 CG2 THR A 88 1.38 REMARK 500 O LEU A 184 CZ PHE A 189 1.40 REMARK 500 CG2 THR A 190 CG TYR A 212 1.40 REMARK 500 O ILE A 67 CE1 PHE A 72 1.44 REMARK 500 OH TYR A 185 CD2 TYR A 206 1.47 REMARK 500 CD2 LEU A 144 OH TYR A 148 1.48 REMARK 500 CE1 PHE A 172 CD1 LEU A 182 1.48 REMARK 500 CG GLN A 193 CG1 ILE A 216 1.49 REMARK 500 CD2 LEU A 64 CD1 ILE A 67 1.50 REMARK 500 CZ PHE A 172 CD1 LEU A 182 1.51 REMARK 500 O LYS A 139 CG PRO A 142 1.55 REMARK 500 CE2 PHE A 197 CD1 LEU A 207 1.56 REMARK 500 CD2 TYR A 98 CB ALA A 121 1.58 REMARK 500 CD1 LEU A 213 CB THR A 236 1.58 REMARK 500 CZ TYR A 185 CB TYR A 206 1.59 REMARK 500 NE2 GLN A 193 CG1 ILE A 216 1.59 REMARK 500 OH TYR A 185 CG TYR A 206 1.61 REMARK 500 CD2 TYR A 82 CD GLU A 107 1.62 REMARK 500 OE1 GLN A 193 CB ILE A 216 1.62 REMARK 500 CG PHE A 197 CE2 PHE A 221 1.63 REMARK 500 OE1 GLN A 90 CG ASN A 113 1.64 REMARK 500 CZ ARG A 109 OE1 GLU A 157 1.64 REMARK 500 NH2 ARG A 109 CD GLU A 157 1.64 REMARK 500 CE2 TYR A 82 OE2 GLU A 107 1.65 REMARK 500 OH TYR A 185 CB TYR A 206 1.65 REMARK 500 CD1 LEU A 114 CG2 THR A 136 1.66 REMARK 500 ND2 ASN A 135 OD2 ASP A 160 1.67 REMARK 500 CG MET A 164 CB ASN A 187 1.67 REMARK 500 CB PRO A 68 CD2 LEU A 92 1.68 REMARK 500 CG LYS A 123 CG2 VAL A 147 1.69 REMARK 500 O ASP A 143 N THR A 145 1.69 REMARK 500 CE1 TYR A 185 CB TYR A 206 1.70 REMARK 500 CG ARG A 65 OG1 THR A 88 1.71 REMARK 500 O GLN A 193 CE2 PHE A 221 1.71 REMARK 500 CG GLN A 90 ND2 ASN A 113 1.72 REMARK 500 C MET A 140 CD PRO A 142 1.73 REMARK 500 CG GLN A 173 OD1 ASP A 196 1.73 REMARK 500 CB GLN A 90 CB ASN A 113 1.74 REMARK 500 CB GLN A 90 CG ASN A 113 1.74 REMARK 500 O GLN A 193 CZ PHE A 221 1.74 REMARK 500 CD GLN A 193 CD1 ILE A 216 1.74 REMARK 500 CE2 TYR A 82 CD GLU A 107 1.75 REMARK 500 C GLN A 193 CD1 PHE A 197 1.75 REMARK 500 O THR A 190 CG GLN A 193 1.76 REMARK 500 CG2 THR A 190 CB TYR A 212 1.76 REMARK 500 O GLN A 193 CB PHE A 197 1.76 REMARK 500 O LEU A 92 N SER A 94 1.77 REMARK 500 CD2 TYR A 82 OE1 GLU A 107 1.78 REMARK 500 O THR A 66 CG PRO A 68 1.79 REMARK 500 O ILE A 67 CD1 PHE A 72 1.79 REMARK 500 CD2 LEU A 127 CD1 ILE A 152 1.80 REMARK 500 CE2 TYR A 98 CB ALA A 121 1.82 REMARK 500 O PRO A 168 ND2 ASN A 170 1.83 REMARK 500 O THR A 190 CD GLN A 193 1.83 REMARK 500 O ILE A 216 N LYS A 218 1.84 REMARK 500 NE2 GLN A 173 OD1 ASP A 196 1.85 REMARK 500 OE1 GLN A 193 CA ILE A 216 1.85 REMARK 500 O LEU A 144 CD2 TYR A 148 1.86 REMARK 500 O PHE A 141 N LEU A 144 1.88 REMARK 500 CG PHE A 189 CG ASN A 210 1.88 REMARK 500 O ARG A 65 CD2 LEU A 92 1.89 REMARK 500 O PHE A 189 O LYS A 211 1.89 REMARK 500 CB PHE A 197 CD2 PHE A 221 1.89 REMARK 500 O TYR A 116 N ASP A 118 1.90 REMARK 500 OD1 ASN A 135 CB ASP A 160 1.91 REMARK 500 CG1 VAL A 169 OD1 ASP A 196 1.91 REMARK 500 OD1 ASN A 208 N SER A 234 1.91 REMARK 500 O MET A 140 CD PRO A 142 1.92 REMARK 500 CA GLY A 194 CE1 PHE A 198 1.92 REMARK 500 CD GLN A 90 CB ASN A 113 1.94 REMARK 500 CG GLU A 178 CD LYS A 201 1.94 REMARK 500 O THR A 66 N PRO A 68 1.95 REMARK 500 CB THR A 190 CB TYR A 212 1.96 REMARK 500 CD GLN A 193 CB ILE A 216 1.96 REMARK 500 CB PHE A 197 CZ PHE A 221 1.96 REMARK 500 CG GLN A 90 OD1 ASN A 113 1.97 REMARK 500 CB LEU A 144 CE2 TYR A 148 1.97 REMARK 500 O VAL A 215 OD1 ASP A 217 1.97 REMARK 500 CD GLN A 90 ND2 ASN A 113 1.98 REMARK 500 O ASP A 217 OD1 ASP A 219 1.98 REMARK 500 CZ PHE A 172 CD2 LEU A 182 1.99 REMARK 500 NE2 GLN A 173 N ASP A 196 1.99 REMARK 500 CG GLN A 90 O ARG A 112 2.00 REMARK 500 C LEU A 144 CD2 TYR A 148 2.00 REMARK 500 O SER A 166 CD PRO A 168 2.01 REMARK 500 O ILE A 167 N VAL A 169 2.01 REMARK 500 CD GLN A 173 OD1 ASP A 196 2.01 REMARK 500 CB GLN A 193 CD1 ILE A 216 2.01 REMARK 500 OG SER A 94 CE1 TYR A 98 2.02 REMARK 500 O GLY A 188 OD1 ASN A 210 2.02 REMARK 500 CG LEU A 144 CZ TYR A 148 2.03 REMARK 500 NE2 GLN A 90 OD1 ASN A 113 2.04 REMARK 500 CG PHE A 189 OD1 ASN A 210 2.04 REMARK 500 NE2 GLN A 193 O TYR A 212 2.04 REMARK 500 CG LEU A 64 CD1 ILE A 67 2.05 REMARK 500 CG GLN A 90 CA ASN A 113 2.05 REMARK 500 O GLN A 91 N GLU A 93 2.05 REMARK 500 N TYR A 195 CD1 PHE A 198 2.05 REMARK 500 CD2 LEU A 144 CZ TYR A 148 2.06 REMARK 500 O VAL A 192 CD1 PHE A 197 2.06 REMARK 500 CG LEU A 144 CE2 TYR A 148 2.07 REMARK 500 C GLN A 193 CZ PHE A 221 2.07 REMARK 500 O VAL A 215 N ASP A 217 2.07 REMARK 500 O ALA A 71 CD1 LEU A 75 2.08 REMARK 500 C LEU A 144 CE2 TYR A 148 2.08 REMARK 500 NE2 GLN A 90 N ASN A 113 2.09 REMARK 500 O TYR A 163 OG SER A 166 2.09 REMARK 500 CD1 LEU A 64 CD1 ILE A 67 2.10 REMARK 500 O PRO A 142 CG2 THR A 145 2.10 REMARK 500 OE2 GLU A 157 NZ LYS A 183 2.10 REMARK 500 CZ PHE A 172 CG LEU A 182 2.10 REMARK 500 O VAL A 192 O GLY A 194 2.10 REMARK 500 CD1 LEU A 89 CG2 THR A 111 2.11 REMARK 500 CG2 ILE A 67 CZ PHE A 72 2.12 REMARK 500 NE2 GLN A 90 CG ASN A 113 2.12 REMARK 500 CD2 HIS A 105 OG SER A 130 2.12 REMARK 500 CB LEU A 127 CD1 ILE A 152 2.12 REMARK 500 O MET A 140 N PRO A 142 2.12 REMARK 500 CE MET A 164 CD2 LEU A 184 2.12 REMARK 500 CB ILE A 60 OG SER A 84 2.13 REMARK 500 CE1 PHE A 189 CG ASN A 210 2.13 REMARK 500 CG LEU A 144 OH TYR A 148 2.14 REMARK 500 NE2 GLN A 90 C ARG A 112 2.16 REMARK 500 O GLN A 193 CD2 PHE A 197 2.16 REMARK 500 O PRO A 168 CG ASN A 170 2.17 REMARK 500 O ASP A 217 CG ASP A 219 2.17 REMARK 500 O ALA A 71 CG LEU A 75 2.18 REMARK 500 O VAL A 192 CE1 PHE A 197 2.18 REMARK 500 O SER A 84 OD1 ASP A 86 2.19 REMARK 500 CB THR A 190 CG TYR A 212 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 70 -97.82 58.13 REMARK 500 VAL A 87 124.88 30.02 REMARK 500 SER A 94 -83.76 45.32 REMARK 500 HIS A 95 -59.17 68.25 REMARK 500 LEU A 100 162.98 27.66 REMARK 500 VAL A 103 149.78 23.85 REMARK 500 ASN A 113 -4.88 118.89 REMARK 500 ASP A 120 -83.32 53.54 REMARK 500 PHE A 153 112.83 17.59 REMARK 500 TYR A 163 -4.12 120.93 REMARK 500 ASN A 170 -83.85 56.29 REMARK 500 CYS A 176 -59.30 102.67 REMARK 500 GLU A 178 91.71 137.67 REMARK 500 THR A 190 -64.69 145.75 REMARK 500 TYR A 195 -98.02 51.79 REMARK 500 THR A 200 -173.70 97.67 REMARK 500 LEU A 202 144.17 52.83 REMARK 500 TYR A 212 -5.58 122.34 REMARK 500 ASP A 219 -84.98 56.95 REMARK 500 TYR A 225 -65.93 101.94 REMARK 850 REMARK 850 CORRECTION BEFORE RELEASE REMARK 850 ORIGINAL DEPOSITION REVISED PRIOR TO RELEASE REMARK 850 DATE REVISED: 14-JAN-1997 TRACKING NUMBER: T10383 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 PDB ENTRIES 1XUL, 1XUM AND 1XUN FORM A RELATED SET. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1XUM SWS P16473 1 - 53 NOT IN ATOMS LIST REMARK 999 1XUM SWS P16473 237 - 764 NOT IN ATOMS LIST REMARK 999 REMARK 999 THE SEQUENCE OF LUTROPIN RECEPTOR USED TO BUILD THE MODEL REMARK 999 WAS OBTAINED FROM PIR DATABASE (ACCESSION CODE: A36120). DBREF 1XUM A 54 236 GB 903760 AAA70232 54 236 SEQRES 1 A 183 THR GLN THR LEU LYS LEU ILE GLU THR HIS LEU ARG THR SEQRES 2 A 183 ILE PRO SER HIS ALA PHE SER ASN LEU PRO ASN ILE SER SEQRES 3 A 183 ARG ILE TYR VAL SER ILE ASP VAL THR LEU GLN GLN LEU SEQRES 4 A 183 GLU SER HIS SER PHE TYR ASN LEU SER LYS VAL THR HIS SEQRES 5 A 183 ILE GLU ILE ARG ASN THR ARG ASN LEU THR TYR ILE ASP SEQRES 6 A 183 PRO ASP ALA LEU LYS GLU LEU PRO LEU LEU LYS SER LEU SEQRES 7 A 183 ALA PHE SER ASN THR GLY LEU LYS MET PHE PRO ASP LEU SEQRES 8 A 183 THR LYS VAL TYR SER THR ASP ILE PHE PHE ILE LEU GLU SEQRES 9 A 183 ILE THR ASP ASN PRO TYR MET THR SER ILE PRO VAL ASN SEQRES 10 A 183 ALA PHE GLN GLY LEU CYS ASN GLU THR LEU THR LEU LYS SEQRES 11 A 183 LEU TYR ASN ASN GLY PHE THR SER VAL GLN GLY TYR ASP SEQRES 12 A 183 PHE PHE GLY THR LYS LEU ASP ALA VAL TYR LEU ASN LYS SEQRES 13 A 183 ASN LYS TYR LEU THR VAL ILE ASP LYS ASP ALA PHE GLY SEQRES 14 A 183 GLY VAL TYR SER GLY PRO SER LEU LEU ASP VAL SER GLN SEQRES 15 A 183 THR HELIX 1 1 ASP A 120 LEU A 122 5 3 HELIX 2 2 PHE A 141 TYR A 148 5 8 HELIX 3 3 ASN A 170 GLN A 173 5 4 HELIX 4 4 ASP A 219 PHE A 221 5 3 SHEET 1 A 8 THR A 56 LYS A 58 0 SHEET 2 A 8 ARG A 80 TYR A 82 1 N ARG A 80 O LEU A 57 SHEET 3 A 8 HIS A 105 GLU A 107 1 N HIS A 105 O ILE A 81 SHEET 4 A 8 SER A 130 ALA A 132 1 N SER A 130 O ILE A 106 SHEET 5 A 8 ILE A 155 GLU A 157 1 N ILE A 155 O LEU A 131 SHEET 6 A 8 THR A 181 LYS A 183 1 N THR A 181 O LEU A 156 SHEET 7 A 8 ALA A 204 TYR A 206 1 N ALA A 204 O LEU A 182 SHEET 8 A 8 LEU A 230 ASP A 232 1 N LEU A 230 O VAL A 205 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000