PDB Short entry for 1Y2B HEADER HYDROLASE 22-NOV-04 1Y2B TITLE CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D IN COMPLEX WITH 3,5- TITLE 2 DIMETHYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4D; COMPND 5 SYNONYM: DPDE3, PDE43; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS(RIL); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHOSPHODIESTERASE, PDE, PDE4D, PYRAZOLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.L.CARD,L.BLASDEL,B.P.ENGLAND,C.ZHANG,Y.SUZUKI,S.GILLETTE,D.FONG, AUTHOR 2 P.N.IBRAHIM,D.R.ARTIS,G.BOLLAG,M.V.MILBURN,S.-H.KIM,J.SCHLESSINGER, AUTHOR 3 K.Y.J.ZHANG REVDAT 3 13-JUL-11 1Y2B 1 VERSN REVDAT 2 24-FEB-09 1Y2B 1 VERSN REVDAT 1 01-MAR-05 1Y2B 0 JRNL AUTH G.L.CARD,L.BLASDEL,B.P.ENGLAND,C.ZHANG,Y.SUZUKI,S.GILLETTE, JRNL AUTH 2 D.FONG,P.N.IBRAHIM,D.R.ARTIS,G.BOLLAG,M.V.MILBURN,S.-H.KIM, JRNL AUTH 3 J.SCHLESSINGER,K.Y.J.ZHANG JRNL TITL A FAMILY OF PHOSPHODIESTERASE INHIBITORS DISCOVERED BY JRNL TITL 2 COCRYSTALLOGRAPHY AND SCAFFOLD-BASED DRUG DESIGN JRNL REF NAT.BIOTECHNOL. V. 23 201 2005 JRNL REFN ISSN 1087-0156 JRNL PMID 15685167 JRNL DOI 10.1038/NBT1059 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.25 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 144200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 487 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5544 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4904 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7509 ; 1.065 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11432 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 669 ; 2.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6109 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1051 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1300 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5538 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2921 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 323 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.108 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3314 ; 0.334 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5411 ; 0.684 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2230 ; 1.250 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2098 ; 2.089 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4444 41.5269 15.3009 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0429 REMARK 3 T33: 0.0547 T12: -0.0145 REMARK 3 T13: 0.0000 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.8316 L22: 0.8023 REMARK 3 L33: 1.4448 L12: 0.1331 REMARK 3 L13: -0.3329 L23: 0.0556 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.0490 S13: -0.0383 REMARK 3 S21: -0.0067 S22: 0.0218 S23: 0.0475 REMARK 3 S31: 0.1087 S32: -0.0614 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 292 REMARK 3 RESIDUE RANGE : B 297 B 411 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1885 43.1561 54.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0420 REMARK 3 T33: 0.0488 T12: -0.0018 REMARK 3 T13: 0.0147 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.6371 L22: 1.0148 REMARK 3 L33: 1.4189 L12: 0.0442 REMARK 3 L13: -0.0341 L23: -0.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0278 S13: -0.0511 REMARK 3 S21: -0.0193 S22: -0.0079 S23: -0.0652 REMARK 3 S31: -0.0178 S32: 0.0426 S33: 0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB031026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : ELVES REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 81.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, ETHYLENE GLYCOL, ISOPROPANOL, REMARK 280 GLYCEROL AND DTT, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.23450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.07050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.50450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.07050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.23450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.50450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS ONE MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 SER A 83 REMARK 465 HIS A 84 REMARK 465 MET A 85 REMARK 465 GLN A 412 REMARK 465 SER A 413 REMARK 465 MET B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 SER B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 HIS B 73 REMARK 465 HIS B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 78 REMARK 465 VAL B 79 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 GLY B 82 REMARK 465 SER B 83 REMARK 465 HIS B 84 REMARK 465 MET B 85 REMARK 465 THR B 293 REMARK 465 SER B 294 REMARK 465 SER B 295 REMARK 465 GLY B 296 REMARK 465 GLN B 412 REMARK 465 SER B 413 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 254 CG CD CE NZ REMARK 480 GLU B 87 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 226 O HOH A 1038 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 140 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 151 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 362 52.85 -140.67 REMARK 500 ILE A 376 -59.72 -124.71 REMARK 500 ASP B 225 11.85 56.43 REMARK 500 ILE B 376 -59.38 -126.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 HOH 1003-1008 ARE ASSOCIATED WITH CHAIN A. REMARK 600 HOH 2003-2008 ARE ASSOCIATED WITH CHAIN B. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 318 OD1 REMARK 620 2 HOH A1008 O 88.8 REMARK 620 3 HIS A 200 NE2 91.8 178.3 REMARK 620 4 HOH A1007 O 93.0 83.0 95.4 REMARK 620 5 HIS A 164 NE2 89.4 86.0 95.6 168.7 REMARK 620 6 ASP A 201 OD2 173.8 96.6 83.0 90.8 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1004 O REMARK 620 2 HOH A1006 O 174.3 REMARK 620 3 HOH A1005 O 84.6 90.4 REMARK 620 4 HOH A1003 O 90.2 86.8 85.9 REMARK 620 5 ASP A 201 OD1 85.6 99.1 167.8 86.9 REMARK 620 6 HOH A1007 O 97.6 85.3 94.6 172.2 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2008 O REMARK 620 2 ASP B 318 OD1 90.1 REMARK 620 3 HIS B 164 NE2 88.4 88.6 REMARK 620 4 HOH B2007 O 84.4 91.9 172.8 REMARK 620 5 ASP B 201 OD2 95.1 173.7 88.1 92.1 REMARK 620 6 HIS B 200 NE2 177.7 91.7 93.0 94.1 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2006 O REMARK 620 2 ASP B 201 OD1 100.4 REMARK 620 3 HOH B2004 O 174.4 84.4 REMARK 620 4 HOH B2005 O 89.9 166.9 85.0 REMARK 620 5 HOH B2007 O 87.0 91.7 95.9 97.0 REMARK 620 6 HOH B2003 O 86.9 87.8 90.3 84.7 173.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 624 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 625 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 627 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 628 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 629 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 633 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y2C RELATED DB: PDB REMARK 900 PDE4D IN COMPLEX WITH 3,5-DIMETHYL-1-PHENYL-1H-PYRAZOLE-4- REMARK 900 CARBOXYLIC ACID ETHYL ESTER REMARK 900 RELATED ID: 1Y2D RELATED DB: PDB REMARK 900 PDE4D IN COMPLEX WITH 1-(4-METHOXY-PHENYL)-3,5-DIMETHYL-1H- REMARK 900 PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER REMARK 900 RELATED ID: 1Y2E RELATED DB: PDB REMARK 900 PDE4D IN COMPLEX WITH 1-(4-AMINO-PHENYL)-3,5-DIMETHYL-1H- REMARK 900 PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER REMARK 900 RELATED ID: 1Y2H RELATED DB: PDB REMARK 900 PDE4B IN COMPLEX WITH 1-(2-CHLORO-PHENYL)-3,5-DIMETHYL-1H- REMARK 900 PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER REMARK 900 RELATED ID: 1Y2J RELATED DB: PDB REMARK 900 PDE4B IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H- REMARK 900 PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER REMARK 900 RELATED ID: 1Y2K RELATED DB: PDB REMARK 900 PDE4D IN COMPLEX WITH 3,5-DIMETHYL-1-(3-NITRO-PHENYL)-1H- REMARK 900 PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER DBREF 1Y2B A 86 413 UNP Q08499 PDE4D_HUMAN 388 715 DBREF 1Y2B B 86 413 UNP Q08499 PDE4D_HUMAN 388 715 SEQADV 1Y2B MET A 65 UNP Q08499 INITIATING METHIONINE SEQADV 1Y2B GLY A 66 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER A 67 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER A 68 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B HIS A 69 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS A 70 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS A 71 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS A 72 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS A 73 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS A 74 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B SER A 75 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER A 76 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B GLY A 77 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B LEU A 78 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B VAL A 79 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B PRO A 80 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B ARG A 81 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B GLY A 82 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER A 83 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B HIS A 84 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B MET A 85 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B MET B 65 UNP Q08499 INITIATING METHIONINE SEQADV 1Y2B GLY B 66 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER B 67 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER B 68 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B HIS B 69 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS B 70 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS B 71 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS B 72 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS B 73 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B HIS B 74 UNP Q08499 EXPRESSION TAG SEQADV 1Y2B SER B 75 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER B 76 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B GLY B 77 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B LEU B 78 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B VAL B 79 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B PRO B 80 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B ARG B 81 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B GLY B 82 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B SER B 83 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B HIS B 84 UNP Q08499 CLONING ARTIFACT SEQADV 1Y2B MET B 85 UNP Q08499 CLONING ARTIFACT SEQRES 1 A 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 A 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 A 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 A 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 A 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 A 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 A 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 A 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 A 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 A 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 A 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 A 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 A 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 A 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 A 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 A 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 A 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 A 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 A 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 A 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 A 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 A 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 A 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 A 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 A 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 A 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER SEQRES 1 B 349 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 349 LEU VAL PRO ARG GLY SER HIS MET THR GLU GLN GLU ASP SEQRES 3 B 349 VAL LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY SEQRES 4 B 349 LEU HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG SEQRES 5 B 349 PRO LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG SEQRES 6 B 349 ASP LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU SEQRES 7 B 349 ILE THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA SEQRES 8 B 349 ASP VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL SEQRES 9 B 349 VAL GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU SEQRES 10 B 349 GLU ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE SEQRES 11 B 349 PHE ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SEQRES 12 B 349 SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA SEQRES 13 B 349 LEU MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS SEQRES 14 B 349 LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS SEQRES 15 B 349 ASP ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER SEQRES 16 B 349 LEU ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP SEQRES 17 B 349 MET SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR SEQRES 18 B 349 MET VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU SEQRES 19 B 349 LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN SEQRES 20 B 349 ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS SEQRES 21 B 349 PRO LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET SEQRES 22 B 349 GLU GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG SEQRES 23 B 349 GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SEQRES 24 B 349 SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE SEQRES 25 B 349 VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS SEQRES 26 B 349 PRO ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN SEQRES 27 B 349 ARG GLU TRP TYR GLN SER THR ILE PRO GLN SER HET ZN A1001 1 HET MG A1002 1 HET ZN B1001 1 HET MG B1002 1 HET DEE B 501 12 HET DEE A 502 12 HET EDO B 601 4 HET EDO A 602 4 HET EDO B 606 4 HET EDO A 607 4 HET EDO B 608 4 HET EDO A 612 4 HET EDO A 615 4 HET EDO A 616 4 HET EDO B 617 4 HET EDO B 618 4 HET EDO A 619 4 HET EDO A 620 4 HET EDO A 622 4 HET EDO A 624 4 HET EDO B 625 4 HET EDO B 627 4 HET EDO B 628 4 HET EDO A 629 4 HET EDO A 633 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM DEE 3,5-DIMETHYL-1H-PYRAZOLE-4-CARBOXYLIC ACID ETHYL ESTER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 DEE 2(C8 H12 N2 O2) FORMUL 9 EDO 19(C2 H6 O2) FORMUL 28 HOH *450(H2 O) HELIX 1 1 THR A 86 LEU A 96 1 11 HELIX 2 2 GLU A 97 VAL A 99 5 3 HELIX 3 3 HIS A 105 SER A 113 1 9 HELIX 4 4 ARG A 116 ARG A 129 1 14 HELIX 5 5 ASP A 130 PHE A 135 1 6 HELIX 6 6 PRO A 138 HIS A 152 1 15 HELIX 7 7 ASN A 161 SER A 177 1 17 HELIX 8 8 THR A 178 GLU A 182 5 5 HELIX 9 9 THR A 186 HIS A 200 1 15 HELIX 10 10 SER A 208 THR A 215 1 8 HELIX 11 11 SER A 217 ASN A 224 1 8 HELIX 12 12 SER A 227 LEU A 240 1 14 HELIX 13 13 LEU A 241 GLU A 243 5 3 HELIX 14 14 THR A 253 ALA A 270 1 18 HELIX 15 15 THR A 271 SER A 274 5 4 HELIX 16 16 LYS A 275 THR A 289 1 15 HELIX 17 17 ASN A 302 LEU A 319 1 18 HELIX 18 18 SER A 320 LYS A 324 5 5 HELIX 19 19 PRO A 325 GLY A 351 1 27 HELIX 20 20 SER A 364 ILE A 376 1 13 HELIX 21 21 ILE A 376 VAL A 388 1 13 HELIX 22 22 ALA A 392 THR A 409 1 18 HELIX 23 23 THR B 86 GLU B 97 1 12 HELIX 24 24 HIS B 105 SER B 113 1 9 HELIX 25 25 ARG B 116 ARG B 129 1 14 HELIX 26 26 ASP B 130 PHE B 135 1 6 HELIX 27 27 PRO B 138 HIS B 152 1 15 HELIX 28 28 ASN B 161 SER B 177 1 17 HELIX 29 29 THR B 178 GLU B 182 5 5 HELIX 30 30 THR B 186 HIS B 200 1 15 HELIX 31 31 SER B 208 THR B 215 1 8 HELIX 32 32 SER B 217 ASN B 224 1 8 HELIX 33 33 SER B 227 LEU B 240 1 14 HELIX 34 34 LEU B 241 GLU B 243 5 3 HELIX 35 35 THR B 253 ALA B 270 1 18 HELIX 36 36 THR B 271 SER B 274 5 4 HELIX 37 37 LYS B 275 THR B 289 1 15 HELIX 38 38 ASN B 302 LEU B 319 1 18 HELIX 39 39 SER B 320 LYS B 324 5 5 HELIX 40 40 PRO B 325 ARG B 350 1 26 HELIX 41 41 SER B 364 ILE B 376 1 13 HELIX 42 42 ILE B 376 VAL B 388 1 13 HELIX 43 43 ALA B 392 ILE B 410 1 19 LINK ZN ZN A1001 OD1 ASP A 318 1555 1555 2.16 LINK ZN ZN A1001 O HOH A1008 1555 1555 2.16 LINK ZN ZN A1001 NE2 HIS A 200 1555 1555 2.16 LINK ZN ZN A1001 O HOH A1007 1555 1555 2.11 LINK ZN ZN A1001 NE2 HIS A 164 1555 1555 2.16 LINK ZN ZN A1001 OD2 ASP A 201 1555 1555 2.10 LINK MG MG A1002 O HOH A1004 1555 1555 2.14 LINK MG MG A1002 O HOH A1006 1555 1555 2.12 LINK MG MG A1002 O HOH A1005 1555 1555 2.16 LINK MG MG A1002 O HOH A1003 1555 1555 2.16 LINK MG MG A1002 OD1 ASP A 201 1555 1555 2.13 LINK MG MG A1002 O HOH A1007 1555 1555 2.02 LINK ZN ZN B1001 O HOH B2008 1555 1555 2.17 LINK ZN ZN B1001 OD1 ASP B 318 1555 1555 2.13 LINK ZN ZN B1001 NE2 HIS B 164 1555 1555 2.18 LINK ZN ZN B1001 O HOH B2007 1555 1555 2.02 LINK ZN ZN B1001 OD2 ASP B 201 1555 1555 2.10 LINK ZN ZN B1001 NE2 HIS B 200 1555 1555 2.16 LINK MG MG B1002 O HOH B2006 1555 1555 2.08 LINK MG MG B1002 OD1 ASP B 201 1555 1555 2.14 LINK MG MG B1002 O HOH B2004 1555 1555 2.15 LINK MG MG B1002 O HOH B2005 1555 1555 2.17 LINK MG MG B1002 O HOH B2007 1555 1555 2.13 LINK MG MG B1002 O HOH B2003 1555 1555 2.17 CISPEP 1 HIS A 389 PRO A 390 0 -0.87 CISPEP 2 HIS B 389 PRO B 390 0 1.71 SITE 1 AC1 6 HIS A 164 HIS A 200 ASP A 201 ASP A 318 SITE 2 AC1 6 HOH A1007 HOH A1008 SITE 1 AC2 6 ASP A 201 HOH A1003 HOH A1004 HOH A1005 SITE 2 AC2 6 HOH A1006 HOH A1007 SITE 1 AC3 6 HIS B 164 HIS B 200 ASP B 201 ASP B 318 SITE 2 AC3 6 HOH B2007 HOH B2008 SITE 1 AC4 6 ASP B 201 HOH B2003 HOH B2004 HOH B2005 SITE 2 AC4 6 HOH B2006 HOH B2007 SITE 1 AC5 6 TYR B 159 ASN B 321 THR B 333 ILE B 336 SITE 2 AC5 6 GLN B 369 PHE B 372 SITE 1 AC6 6 TYR A 159 ASN A 321 THR A 333 ILE A 336 SITE 2 AC6 6 GLN A 369 PHE A 372 SITE 1 AC7 5 PRO A 411 ARG B 330 GLU B 366 TYR B 406 SITE 2 AC7 5 HOH B2058 SITE 1 AC8 4 LYS A 262 ILE A 265 ASP A 266 HOH A1030 SITE 1 AC9 1 HOH B2086 SITE 1 BC1 9 ASN A 115 GLU A 150 ASP A 151 TYR A 153 SITE 2 BC1 9 ASN A 162 EDO A 615 HOH A1157 HOH A1223 SITE 3 BC1 9 GLN B 407 SITE 1 BC2 4 SER B 208 PRO B 356 HOH B2032 HOH B2067 SITE 1 BC3 4 PRO A 179 HIS A 389 PRO A 390 ASP A 391 SITE 1 BC4 6 ASN A 115 ALA A 155 ASN A 162 ILE A 163 SITE 2 BC4 6 EDO A 607 HOH A1157 SITE 1 BC5 6 LEU A 175 THR A 178 TRP A 384 ASP A 391 SITE 2 BC5 6 ALA A 392 HOH A1134 SITE 1 BC6 4 ARG B 257 ARG B 261 EDO B 618 HOH B2148 SITE 1 BC7 6 ARG B 257 GLN B 258 ARG B 261 EDO B 617 SITE 2 BC7 6 HOH B2160 HOH B2205 SITE 1 BC8 8 ALA A 183 VAL A 184 HOH A1121 GLY B 114 SITE 2 BC8 8 ASN B 115 ARG B 116 HOH B2144 HOH B2155 SITE 1 BC9 5 PHE A 238 PHE A 249 ARG A 257 ARG A 261 SITE 2 BC9 5 HOH A1168 SITE 1 CC1 4 SER A 208 PHE A 340 PRO A 356 HOH A1057 SITE 1 CC2 2 GLU A 218 HOH B2025 SITE 1 CC3 4 LYS B 262 ILE B 265 ASP B 266 HOH B2047 SITE 1 CC4 4 HOH A1009 ASP B 401 ASN B 402 HOH B2114 SITE 1 CC5 2 GLU A 366 HOH A1070 SITE 1 CC6 7 ASP A 151 HIS A 152 GLY B 371 ASP B 374 SITE 2 CC6 7 TYR B 375 HOH B2100 HOH B2192 SITE 1 CC7 3 HIS A 154 ASP A 203 PRO A 205 CRYST1 60.469 79.009 164.141 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006092 0.00000