PDB Short entry for 1YDY HEADER HYDROLASE 27-DEC-04 1YDY TITLE CRYSTAL STRUCTURE OF PERIPLASMIC GLYCEROPHOSPHODIESTER TITLE 2 PHOSPHODIESTERASE FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE; COMPND 5 EC: 3.1.4.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLPQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PHOSPHODIESTERASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,E.FEDOROV,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 23-AUG-23 1YDY 1 REMARK REVDAT 5 03-FEB-21 1YDY 1 AUTHOR REMARK LINK REVDAT 4 11-OCT-17 1YDY 1 REMARK REVDAT 3 13-JUL-11 1YDY 1 VERSN REVDAT 2 24-FEB-09 1YDY 1 VERSN REVDAT 1 25-JAN-05 1YDY 0 JRNL AUTH V.M.MALASHKEVICH,E.FEDOROV,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PERIPLASMIC GLYCEROPHOSPHODIESTER JRNL TITL 2 PHOSPHODIESTERASE FROM ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1960719.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 82194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4112 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12479 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 609 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.89000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -11.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 56.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL_AUTO.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GOL_AUTO.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : 0.53000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1T8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M TRIS, 25% REMARK 280 PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.89450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.60950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.60950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.89450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.23450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 MET A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 MET A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 ILE A 17 REMARK 465 VAL A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ASP A 27 REMARK 465 SER A 28 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 MET B 10 REMARK 465 ALA B 11 REMARK 465 ILE B 12 REMARK 465 MET B 13 REMARK 465 MET B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 ILE B 17 REMARK 465 VAL B 18 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 MET B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 ASP B 27 REMARK 465 SER B 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 -21.46 66.97 REMARK 500 ASP A 71 30.22 -96.69 REMARK 500 VAL A 85 12.57 -140.22 REMARK 500 SER A 141 -147.88 58.93 REMARK 500 ALA A 174 59.71 37.27 REMARK 500 GLU A 221 -56.95 -121.90 REMARK 500 LYS A 319 62.10 -154.72 REMARK 500 HIS B 46 -18.35 63.19 REMARK 500 SER B 141 -146.82 61.56 REMARK 500 ALA B 174 61.94 36.87 REMARK 500 GLU B 229 88.36 -154.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 ASP A 65 OD1 90.1 REMARK 620 3 GLU A 171 OE1 114.5 81.0 REMARK 620 4 GOL A 902 O1 77.8 144.4 74.2 REMARK 620 5 GOL A 902 O2 100.3 149.5 119.0 66.1 REMARK 620 6 HOH A 905 O 79.0 80.8 157.3 128.0 73.3 REMARK 620 7 HOH A1043 O 159.4 76.9 79.7 121.8 84.1 83.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 63 OE1 REMARK 620 2 ASP B 65 OD1 92.9 REMARK 620 3 GLU B 171 OE1 111.4 76.6 REMARK 620 4 GOL B 901 O1 76.8 141.9 73.5 REMARK 620 5 GOL B 901 O2 100.9 151.0 120.3 66.8 REMARK 620 6 HOH B 906 O 78.5 82.5 157.2 129.3 75.5 REMARK 620 7 HOH B1052 O 162.9 80.8 82.8 117.7 78.6 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T8Q RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-T1974 RELATED DB: TARGETDB DBREF 1YDY A 1 356 UNP P09394 GLPQ_ECOLI 1 356 DBREF 1YDY B 1 356 UNP P09394 GLPQ_ECOLI 1 356 SEQRES 1 A 356 MET LYS LEU THR LEU LYS ASN LEU SER MET ALA ILE MET SEQRES 2 A 356 MET SER THR ILE VAL MET GLY SER SER ALA MET ALA ALA SEQRES 3 A 356 ASP SER ASN GLU LYS ILE VAL ILE ALA HIS ARG GLY ALA SEQRES 4 A 356 SER GLY TYR LEU PRO GLU HIS THR LEU PRO ALA LYS ALA SEQRES 5 A 356 MET ALA TYR ALA GLN GLY ALA ASP TYR LEU GLU GLN ASP SEQRES 6 A 356 LEU VAL MET THR LYS ASP ASP ASN LEU VAL VAL LEU HIS SEQRES 7 A 356 ASP HIS TYR LEU ASP ARG VAL THR ASP VAL ALA ASP ARG SEQRES 8 A 356 PHE PRO ASP ARG ALA ARG LYS ASP GLY ARG TYR TYR ALA SEQRES 9 A 356 ILE ASP PHE THR LEU ASP GLU ILE LYS SER LEU LYS PHE SEQRES 10 A 356 THR GLU GLY PHE ASP ILE GLU ASN GLY LYS LYS VAL GLN SEQRES 11 A 356 THR TYR PRO GLY ARG PHE PRO MET GLY LYS SER ASP PHE SEQRES 12 A 356 ARG VAL HIS THR PHE GLU GLU GLU ILE GLU PHE VAL GLN SEQRES 13 A 356 GLY LEU ASN HIS SER THR GLY LYS ASN ILE GLY ILE TYR SEQRES 14 A 356 PRO GLU ILE LYS ALA PRO TRP PHE HIS HIS GLN GLU GLY SEQRES 15 A 356 LYS ASP ILE ALA ALA LYS THR LEU GLU VAL LEU LYS LYS SEQRES 16 A 356 TYR GLY TYR THR GLY LYS ASP ASP LYS VAL TYR LEU GLN SEQRES 17 A 356 CYS PHE ASP ALA ASP GLU LEU LYS ARG ILE LYS ASN GLU SEQRES 18 A 356 LEU GLU PRO LYS MET GLY MET GLU LEU ASN LEU VAL GLN SEQRES 19 A 356 LEU ILE ALA TYR THR ASP TRP ASN GLU THR GLN GLN LYS SEQRES 20 A 356 GLN PRO ASP GLY SER TRP VAL ASN TYR ASN TYR ASP TRP SEQRES 21 A 356 MET PHE LYS PRO GLY ALA MET LYS GLN VAL ALA GLU TYR SEQRES 22 A 356 ALA ASP GLY ILE GLY PRO ASP TYR HIS MET LEU ILE GLU SEQRES 23 A 356 GLU THR SER GLN PRO GLY ASN ILE LYS LEU THR GLY MET SEQRES 24 A 356 VAL GLN ASP ALA GLN GLN ASN LYS LEU VAL VAL HIS PRO SEQRES 25 A 356 TYR THR VAL ARG SER ASP LYS LEU PRO GLU TYR THR PRO SEQRES 26 A 356 ASP VAL ASN GLN LEU TYR ASP ALA LEU TYR ASN LYS ALA SEQRES 27 A 356 GLY VAL ASN GLY LEU PHE THR ASP PHE PRO ASP LYS ALA SEQRES 28 A 356 VAL LYS PHE LEU ASN SEQRES 1 B 356 MET LYS LEU THR LEU LYS ASN LEU SER MET ALA ILE MET SEQRES 2 B 356 MET SER THR ILE VAL MET GLY SER SER ALA MET ALA ALA SEQRES 3 B 356 ASP SER ASN GLU LYS ILE VAL ILE ALA HIS ARG GLY ALA SEQRES 4 B 356 SER GLY TYR LEU PRO GLU HIS THR LEU PRO ALA LYS ALA SEQRES 5 B 356 MET ALA TYR ALA GLN GLY ALA ASP TYR LEU GLU GLN ASP SEQRES 6 B 356 LEU VAL MET THR LYS ASP ASP ASN LEU VAL VAL LEU HIS SEQRES 7 B 356 ASP HIS TYR LEU ASP ARG VAL THR ASP VAL ALA ASP ARG SEQRES 8 B 356 PHE PRO ASP ARG ALA ARG LYS ASP GLY ARG TYR TYR ALA SEQRES 9 B 356 ILE ASP PHE THR LEU ASP GLU ILE LYS SER LEU LYS PHE SEQRES 10 B 356 THR GLU GLY PHE ASP ILE GLU ASN GLY LYS LYS VAL GLN SEQRES 11 B 356 THR TYR PRO GLY ARG PHE PRO MET GLY LYS SER ASP PHE SEQRES 12 B 356 ARG VAL HIS THR PHE GLU GLU GLU ILE GLU PHE VAL GLN SEQRES 13 B 356 GLY LEU ASN HIS SER THR GLY LYS ASN ILE GLY ILE TYR SEQRES 14 B 356 PRO GLU ILE LYS ALA PRO TRP PHE HIS HIS GLN GLU GLY SEQRES 15 B 356 LYS ASP ILE ALA ALA LYS THR LEU GLU VAL LEU LYS LYS SEQRES 16 B 356 TYR GLY TYR THR GLY LYS ASP ASP LYS VAL TYR LEU GLN SEQRES 17 B 356 CYS PHE ASP ALA ASP GLU LEU LYS ARG ILE LYS ASN GLU SEQRES 18 B 356 LEU GLU PRO LYS MET GLY MET GLU LEU ASN LEU VAL GLN SEQRES 19 B 356 LEU ILE ALA TYR THR ASP TRP ASN GLU THR GLN GLN LYS SEQRES 20 B 356 GLN PRO ASP GLY SER TRP VAL ASN TYR ASN TYR ASP TRP SEQRES 21 B 356 MET PHE LYS PRO GLY ALA MET LYS GLN VAL ALA GLU TYR SEQRES 22 B 356 ALA ASP GLY ILE GLY PRO ASP TYR HIS MET LEU ILE GLU SEQRES 23 B 356 GLU THR SER GLN PRO GLY ASN ILE LYS LEU THR GLY MET SEQRES 24 B 356 VAL GLN ASP ALA GLN GLN ASN LYS LEU VAL VAL HIS PRO SEQRES 25 B 356 TYR THR VAL ARG SER ASP LYS LEU PRO GLU TYR THR PRO SEQRES 26 B 356 ASP VAL ASN GLN LEU TYR ASP ALA LEU TYR ASN LYS ALA SEQRES 27 B 356 GLY VAL ASN GLY LEU PHE THR ASP PHE PRO ASP LYS ALA SEQRES 28 B 356 VAL LYS PHE LEU ASN HET CA A 904 1 HET GOL A 902 6 HET CA B 903 1 HET GOL B 901 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *785(H2 O) HELIX 1 1 THR A 47 GLN A 57 1 11 HELIX 2 2 ASP A 87 PHE A 92 1 6 HELIX 3 3 TYR A 103 PHE A 107 5 5 HELIX 4 4 THR A 108 LEU A 115 1 8 HELIX 5 5 THR A 147 GLY A 163 1 17 HELIX 6 6 ALA A 174 GLU A 181 1 8 HELIX 7 7 ASP A 184 TYR A 196 1 13 HELIX 8 8 ASP A 211 GLU A 221 1 11 HELIX 9 9 GLU A 221 GLY A 227 1 7 HELIX 10 10 TYR A 238 ASN A 242 5 5 HELIX 11 11 TYR A 258 LYS A 263 5 6 HELIX 12 12 GLY A 265 ALA A 271 1 7 HELIX 13 13 TYR A 281 LEU A 284 5 4 HELIX 14 14 GLY A 298 ASN A 306 1 9 HELIX 15 15 ASP A 326 ASN A 336 1 11 HELIX 16 16 PHE A 347 ASN A 356 1 10 HELIX 17 17 THR B 47 GLN B 57 1 11 HELIX 18 18 ASP B 87 PHE B 92 1 6 HELIX 19 19 TYR B 103 PHE B 107 5 5 HELIX 20 20 THR B 108 SER B 114 1 7 HELIX 21 21 THR B 147 GLY B 163 1 17 HELIX 22 22 ALA B 174 GLU B 181 1 8 HELIX 23 23 ASP B 184 TYR B 196 1 13 HELIX 24 24 ASP B 211 GLU B 221 1 11 HELIX 25 25 GLU B 221 GLY B 227 1 7 HELIX 26 26 TYR B 238 ASN B 242 5 5 HELIX 27 27 TYR B 258 LYS B 263 5 6 HELIX 28 28 GLY B 265 GLU B 272 1 8 HELIX 29 29 TYR B 281 LEU B 284 5 4 HELIX 30 30 GLY B 298 ASN B 306 1 9 HELIX 31 31 ASP B 326 ASN B 336 1 11 HELIX 32 32 PHE B 347 ASN B 356 1 10 SHEET 1 A 3 LEU A 74 VAL A 76 0 SHEET 2 A 3 TYR A 61 MET A 68 -1 N VAL A 67 O VAL A 75 SHEET 3 A 3 GLY A 167 ILE A 172 1 O GLU A 171 N LEU A 66 SHEET 1 B 4 LEU A 74 VAL A 76 0 SHEET 2 B 4 TYR A 61 MET A 68 -1 N VAL A 67 O VAL A 75 SHEET 3 B 4 ILE A 32 ALA A 35 1 N ALA A 35 O TYR A 61 SHEET 4 B 4 GLY A 342 THR A 345 1 O LEU A 343 N ILE A 34 SHEET 1 C 2 PHE A 121 GLU A 124 0 SHEET 2 C 2 LYS A 127 GLN A 130 -1 O LYS A 127 N GLU A 124 SHEET 1 D 4 TYR A 206 CYS A 209 0 SHEET 2 D 4 ASN A 231 ILE A 236 1 O VAL A 233 N LEU A 207 SHEET 3 D 4 GLY A 276 PRO A 279 1 O GLY A 278 N ILE A 236 SHEET 4 D 4 VAL A 309 VAL A 310 1 O VAL A 309 N ILE A 277 SHEET 1 E 2 GLN A 245 LYS A 247 0 SHEET 2 E 2 TRP A 253 ASN A 255 -1 O VAL A 254 N GLN A 246 SHEET 1 F 3 LEU B 74 VAL B 76 0 SHEET 2 F 3 TYR B 61 MET B 68 -1 N VAL B 67 O VAL B 75 SHEET 3 F 3 GLY B 167 ILE B 172 1 O GLU B 171 N LEU B 66 SHEET 1 G 4 LEU B 74 VAL B 76 0 SHEET 2 G 4 TYR B 61 MET B 68 -1 N VAL B 67 O VAL B 75 SHEET 3 G 4 ILE B 32 ALA B 35 1 N ALA B 35 O TYR B 61 SHEET 4 G 4 GLY B 342 THR B 345 1 O LEU B 343 N ILE B 34 SHEET 1 H 2 PHE B 121 ILE B 123 0 SHEET 2 H 2 LYS B 128 GLN B 130 -1 O VAL B 129 N ASP B 122 SHEET 1 I 4 TYR B 206 CYS B 209 0 SHEET 2 I 4 ASN B 231 ILE B 236 1 O ASN B 231 N LEU B 207 SHEET 3 I 4 GLY B 276 PRO B 279 1 O GLY B 278 N ILE B 236 SHEET 4 I 4 VAL B 309 VAL B 310 1 O VAL B 309 N ILE B 277 SHEET 1 J 2 GLN B 245 LYS B 247 0 SHEET 2 J 2 TRP B 253 ASN B 255 -1 O VAL B 254 N GLN B 246 LINK OE1 GLU A 63 CA CA A 904 1555 1555 2.36 LINK OD1 ASP A 65 CA CA A 904 1555 1555 2.50 LINK OE1 GLU A 171 CA CA A 904 1555 1555 2.33 LINK O1 GOL A 902 CA CA A 904 1555 1555 2.54 LINK O2 GOL A 902 CA CA A 904 1555 1555 2.49 LINK CA CA A 904 O HOH A 905 1555 1555 2.59 LINK CA CA A 904 O HOH A1043 1555 1555 2.46 LINK OE1 GLU B 63 CA CA B 903 1555 1555 2.37 LINK OD1 ASP B 65 CA CA B 903 1555 1555 2.45 LINK OE1 GLU B 171 CA CA B 903 1555 1555 2.29 LINK O1 GOL B 901 CA CA B 903 1555 1555 2.56 LINK O2 GOL B 901 CA CA B 903 1555 1555 2.42 LINK CA CA B 903 O HOH B 906 1555 1555 2.53 LINK CA CA B 903 O HOH B1052 1555 1555 2.57 CISPEP 1 TYR A 313 THR A 314 0 -4.48 CISPEP 2 TYR B 313 THR B 314 0 -5.11 SITE 1 AC1 6 GLU B 63 ASP B 65 GLU B 171 GOL B 901 SITE 2 AC1 6 HOH B 906 HOH B1052 SITE 1 AC2 6 GLU A 63 ASP A 65 GLU A 171 GOL A 902 SITE 2 AC2 6 HOH A 905 HOH A1043 SITE 1 AC3 10 HIS B 36 GLU B 63 GLU B 171 GLN B 208 SITE 2 AC3 10 PHE B 210 LEU B 235 TYR B 313 CA B 903 SITE 3 AC3 10 HOH B 906 HOH B1104 SITE 1 AC4 11 HIS A 36 GLU A 63 GLU A 171 GLN A 208 SITE 2 AC4 11 PHE A 210 LEU A 235 TYR A 313 CA A 904 SITE 3 AC4 11 HOH A 905 HOH A1098 HOH A1185 CRYST1 63.789 74.469 157.219 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006361 0.00000