PDB Short entry for 1YNU HEADER LYASE 25-JAN-05 1YNU TITLE CRYSTAL STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH L-VINYLGLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACC SYNTHASE, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE- COMPND 5 LYASE; COMPND 6 EC: 4.4.1.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MALUS X DOMESTICA; SOURCE 3 ORGANISM_TAXID: 3750; SOURCE 4 STRAIN: GOLDEN DELICIOUS; SOURCE 5 TISSUE: FRUIT CORTICAL TISSUE; SOURCE 6 GENE: ACS-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET19BV435STOPACS KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CAPITANI,M.TSCHOPP,A.C.ELIOT,J.F.KIRSCH,M.G.GRUTTER REVDAT 4 25-OCT-23 1YNU 1 REMARK LINK REVDAT 3 13-JUL-11 1YNU 1 VERSN REVDAT 2 24-FEB-09 1YNU 1 VERSN REVDAT 1 03-MAY-05 1YNU 0 JRNL AUTH G.CAPITANI,M.TSCHOPP,A.C.ELIOT,J.F.KIRSCH,M.G.GRUTTER JRNL TITL STRUCTURE OF ACC SYNTHASE INACTIVATED BY THE MECHANISM-BASED JRNL TITL 2 INHIBITOR L-VINYLGLYCINE. JRNL REF FEBS LETT. V. 579 2458 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 15848188 JRNL DOI 10.1016/J.FEBSLET.2005.03.048 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 527 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 33 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.34100 REMARK 3 B22 (A**2) : -1.09200 REMARK 3 B33 (A**2) : 3.43300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.65100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED BULK SOLVENT CORRECTION (CNS 1.1) REMARK 4 REMARK 4 1YNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1M7Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS, NICL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.65000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.86731 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.38072 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 MET A 3 REMARK 465 PHE A 10 REMARK 465 ASN A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 GLY A 14 REMARK 465 GLN A 15 REMARK 465 ASP A 16 REMARK 465 ARG A 253 REMARK 465 ASN A 254 REMARK 465 CYS A 255 REMARK 465 ASP A 256 REMARK 465 GLU A 257 REMARK 465 ASN A 258 REMARK 465 ASN A 434 REMARK 465 VAL A 435 REMARK 465 PRO A 436 REMARK 465 GLU A 437 REMARK 465 VAL A 438 REMARK 465 ASN A 439 REMARK 465 GLY A 440 REMARK 465 GLY A 441 REMARK 465 SER A 442 REMARK 465 GLN A 443 REMARK 465 SER A 444 REMARK 465 SER A 445 REMARK 465 HIS A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 HIS A 449 REMARK 465 SER A 450 REMARK 465 ARG A 451 REMARK 465 ARG A 452 REMARK 465 GLN A 453 REMARK 465 SER A 454 REMARK 465 LEU A 455 REMARK 465 THR A 456 REMARK 465 LYS A 457 REMARK 465 TRP A 458 REMARK 465 VAL A 459 REMARK 465 SER A 460 REMARK 465 ARG A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 PHE A 464 REMARK 465 ASP A 465 REMARK 465 ASP A 466 REMARK 465 ARG A 467 REMARK 465 GLY A 468 REMARK 465 PRO A 469 REMARK 465 ILE A 470 REMARK 465 PRO A 471 REMARK 465 GLY A 472 REMARK 465 ARG A 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 64.27 -162.13 REMARK 500 GLU A 33 7.63 -63.87 REMARK 500 VAL A 34 -48.34 -147.62 REMARK 500 ASN A 36 76.38 -158.68 REMARK 500 ARG A 103 31.58 -99.23 REMARK 500 PRO A 134 151.38 -49.28 REMARK 500 GLU A 231 31.88 -99.30 REMARK 500 LEU A 277 51.81 -114.16 REMARK 500 ASN A 354 92.83 -67.37 REMARK 500 HIS A 367 1.28 -69.85 REMARK 500 ASN A 372 49.11 -79.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 702 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD1 REMARK 620 2 HIS A 86 ND1 92.7 REMARK 620 3 TRS A 901 N 77.3 91.6 REMARK 620 4 TRS A 901 O1 87.1 169.9 78.5 REMARK 620 5 HOH A1012 O 103.0 104.5 163.8 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 701 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 HOH A 928 O 93.2 REMARK 620 3 HOH A 983 O 94.8 124.9 REMARK 620 4 HOH A1019 O 96.5 154.2 78.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 801 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 304 O REMARK 620 2 LEU A 304 O 134.1 REMARK 620 3 HOH A 927 O 95.5 120.9 REMARK 620 4 HOH A 927 O 120.9 95.5 77.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PY4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B8G RELATED DB: PDB REMARK 900 THE NATIVE STRUCTURE OF APPLE ACC SYNTHASE REMARK 900 RELATED ID: 1M7Y RELATED DB: PDB REMARK 900 THE STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH THE INHIBITOR L- REMARK 900 AMINOETHOXYVINYLGLYCINE REMARK 900 RELATED ID: 1M4N RELATED DB: PDB REMARK 900 THE STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH AN AMINO-OXY REMARK 900 ANALOGUE OF THE SUBSTRATE DBREF 1YNU A 1 473 UNP P37821 1A1C_MALDO 1 473 SEQRES 1 A 473 MET ARG MET LEU SER ARG ASN ALA THR PHE ASN SER HIS SEQRES 2 A 473 GLY GLN ASP SER SER TYR PHE LEU GLY TRP GLN GLU TYR SEQRES 3 A 473 GLU LYS ASN PRO TYR HIS GLU VAL HIS ASN THR ASN GLY SEQRES 4 A 473 ILE ILE GLN MET GLY LEU ALA GLU ASN GLN LEU CYS PHE SEQRES 5 A 473 ASP LEU LEU GLU SER TRP LEU ALA LYS ASN PRO GLU ALA SEQRES 6 A 473 ALA ALA PHE LYS LYS ASN GLY GLU SER ILE PHE ALA GLU SEQRES 7 A 473 LEU ALA LEU PHE GLN ASP TYR HIS GLY LEU PRO ALA PHE SEQRES 8 A 473 LYS LYS ALA MET VAL ASP PHE MET ALA GLU ILE ARG GLY SEQRES 9 A 473 ASN LYS VAL THR PHE ASP PRO ASN HIS LEU VAL LEU THR SEQRES 10 A 473 ALA GLY ALA THR SER ALA ASN GLU THR PHE ILE PHE CYS SEQRES 11 A 473 LEU ALA ASP PRO GLY GLU ALA VAL LEU ILE PRO THR PRO SEQRES 12 A 473 TYR TYR PRO GLY PHE ASP ARG ASP LEU LYS TRP ARG THR SEQRES 13 A 473 GLY VAL GLU ILE VAL PRO ILE HIS CYS THR SER SER ASN SEQRES 14 A 473 GLY PHE GLN ILE THR GLU THR ALA LEU GLU GLU ALA TYR SEQRES 15 A 473 GLN GLU ALA GLU LYS ARG ASN LEU ARG VAL LYS GLY VAL SEQRES 16 A 473 LEU VAL THR ASN PRO SER ASN PRO LEU GLY THR THR MET SEQRES 17 A 473 THR ARG ASN GLU LEU TYR LEU LEU LEU SER PHE VAL GLU SEQRES 18 A 473 ASP LYS GLY ILE HIS LEU ILE SER ASP GLU ILE TYR SER SEQRES 19 A 473 GLY THR ALA PHE SER SER PRO SER PHE ILE SER VAL MET SEQRES 20 A 473 GLU VAL LEU LYS ASP ARG ASN CYS ASP GLU ASN SER GLU SEQRES 21 A 473 VAL TRP GLN ARG VAL HIS VAL VAL TYR SER LEU SER LYS SEQRES 22 A 473 ASP LEU GLY LEU PRO GLY PHE ARG VAL GLY ALA ILE TYR SEQRES 23 A 473 SER ASN ASP ASP MET VAL VAL ALA ALA ALA THR LYS MET SEQRES 24 A 473 SER SER PHE GLY LEU VAL SER SER GLN THR GLN HIS LEU SEQRES 25 A 473 LEU SER ALA MET LEU SER ASP LYS LYS LEU THR LYS ASN SEQRES 26 A 473 TYR ILE ALA GLU ASN HIS LYS ARG LEU LYS GLN ARG GLN SEQRES 27 A 473 LYS LYS LEU VAL SER GLY LEU GLN LYS SER GLY ILE SER SEQRES 28 A 473 CYS LEU ASN GLY ASN ALA GLY LEU PHE CYS TRP VAL ASP SEQRES 29 A 473 MET ARG HIS LEU LEU ARG SER ASN THR PHE GLU ALA GLU SEQRES 30 A 473 MET GLU LEU TRP LYS LYS ILE VAL TYR GLU VAL HIS LEU SEQRES 31 A 473 ASN ILE SER PRO GLY SER SER CYS HIS CYS THR GLU PRO SEQRES 32 A 473 GLY TRP PHE ARG VAL CYS PHE ALA ASN LEU PRO GLU ARG SEQRES 33 A 473 THR LEU ASP LEU ALA MET GLN ARG LEU LYS ALA PHE VAL SEQRES 34 A 473 GLY GLU TYR TYR ASN VAL PRO GLU VAL ASN GLY GLY SER SEQRES 35 A 473 GLN SER SER HIS LEU SER HIS SER ARG ARG GLN SER LEU SEQRES 36 A 473 THR LYS TRP VAL SER ARG LEU SER PHE ASP ASP ARG GLY SEQRES 37 A 473 PRO ILE PRO GLY ARG HET NI A 701 1 HET NI A 702 1 HET K A 801 1 HET PY4 A 600 22 HET TRS A 901 8 HETNAM NI NICKEL (II) ION HETNAM K POTASSIUM ION HETNAM PY4 2-[O-PHOSPHONOPYRIDOXYL]-AMINO- BUTYRIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN PY4 VITAMIN B6 COMPLEXED WITH 2-AMINO-BUTYRIC ACID HETSYN TRS TRIS BUFFER FORMUL 2 NI 2(NI 2+) FORMUL 4 K K 1+ FORMUL 5 PY4 C12 H19 N2 O7 P FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 HOH *122(H2 O) HELIX 1 1 SER A 17 ASN A 29 1 13 HELIX 2 2 CYS A 51 ASN A 62 1 12 HELIX 3 3 GLU A 64 ALA A 67 5 4 HELIX 4 4 ILE A 75 PHE A 82 1 8 HELIX 5 5 LEU A 88 ARG A 103 1 16 HELIX 6 6 ASP A 110 ASN A 112 5 3 HELIX 7 7 GLY A 119 ALA A 132 1 14 HELIX 8 8 GLY A 147 LEU A 152 1 6 HELIX 9 9 THR A 166 GLY A 170 5 5 HELIX 10 10 THR A 174 ARG A 188 1 15 HELIX 11 11 THR A 209 GLY A 224 1 16 HELIX 12 12 TYR A 233 ALA A 237 5 5 HELIX 13 13 SER A 245 LEU A 250 1 6 HELIX 14 14 GLU A 260 GLN A 263 5 4 HELIX 15 15 LEU A 277 PHE A 280 5 4 HELIX 16 16 ASP A 289 SER A 301 1 13 HELIX 17 17 SER A 306 LEU A 317 1 12 HELIX 18 18 ASP A 319 LYS A 347 1 29 HELIX 19 19 ARG A 366 LEU A 369 5 4 HELIX 20 20 THR A 373 GLU A 387 1 15 HELIX 21 21 PRO A 414 TYR A 433 1 20 SHEET 1 A 2 ILE A 41 GLN A 42 0 SHEET 2 A 2 LEU A 390 ASN A 391 1 O ASN A 391 N ILE A 41 SHEET 1 B 2 LYS A 69 LYS A 70 0 SHEET 2 B 2 GLU A 73 SER A 74 -1 O GLU A 73 N LYS A 70 SHEET 1 C 7 LEU A 114 ALA A 118 0 SHEET 2 C 7 VAL A 282 SER A 287 -1 O ILE A 285 N VAL A 115 SHEET 3 C 7 VAL A 265 SER A 270 -1 N VAL A 267 O TYR A 286 SHEET 4 C 7 HIS A 226 ASP A 230 1 N LEU A 227 O HIS A 266 SHEET 5 C 7 VAL A 192 THR A 198 1 N VAL A 197 O ASP A 230 SHEET 6 C 7 ALA A 137 PRO A 141 1 N ALA A 137 O LYS A 193 SHEET 7 C 7 GLU A 159 ILE A 163 1 O VAL A 161 N VAL A 138 SHEET 1 D 4 SER A 351 CYS A 352 0 SHEET 2 D 4 PHE A 360 ASP A 364 -1 O ASP A 364 N SER A 351 SHEET 3 D 4 TRP A 405 CYS A 409 -1 O PHE A 406 N VAL A 363 SHEET 4 D 4 SER A 393 PRO A 394 -1 N SER A 393 O ARG A 407 LINK NZ LYS A 273 CG PY4 A 600 1555 1555 1.48 LINK OD1 ASP A 84 NI NI A 702 1555 1555 2.27 LINK ND1 HIS A 86 NI NI A 702 1555 1555 2.07 LINK NE2 HIS A 113 NI NI A 701 1555 1555 2.04 LINK O LEU A 304 K K A 801 1555 1555 2.83 LINK O LEU A 304 K K A 801 2656 1555 2.83 LINK NI NI A 701 O HOH A 928 1555 1555 2.15 LINK NI NI A 701 O HOH A 983 1555 1555 2.53 LINK NI NI A 701 O HOH A1019 1555 1555 2.45 LINK NI NI A 702 N TRS A 901 1555 1555 1.92 LINK NI NI A 702 O1 TRS A 901 1555 1555 2.50 LINK NI NI A 702 O HOH A1012 1555 1555 2.45 LINK K K A 801 O HOH A 927 1555 1555 2.83 LINK K K A 801 O HOH A 927 1555 2656 2.83 CISPEP 1 THR A 142 PRO A 143 0 -0.42 CISPEP 2 ASN A 199 PRO A 200 0 -0.90 CISPEP 3 ASN A 202 PRO A 203 0 1.36 CISPEP 4 SER A 240 PRO A 241 0 -0.01 SITE 1 AC1 5 HIS A 113 ASP A 290 HOH A 928 HOH A 983 SITE 2 AC1 5 HOH A1019 SITE 1 AC2 4 ASP A 84 HIS A 86 TRS A 901 HOH A1012 SITE 1 AC3 2 LEU A 304 HOH A 927 SITE 1 AC4 18 TYR A 19 LEU A 45 ALA A 46 GLU A 47 SITE 2 AC4 18 GLY A 119 ALA A 120 THR A 121 TYR A 145 SITE 3 AC4 18 ASN A 202 ASP A 230 ILE A 232 TYR A 233 SITE 4 AC4 18 SER A 270 SER A 272 LYS A 273 ARG A 281 SITE 5 AC4 18 ARG A 407 HOH A 982 SITE 1 AC5 6 GLU A 27 GLN A 83 ASP A 84 TYR A 85 SITE 2 AC5 6 HIS A 86 NI A 702 CRYST1 103.300 59.360 79.050 90.00 124.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009681 0.000000 0.006579 0.00000 SCALE2 0.000000 0.016846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015295 0.00000