PDB Short entry for 1YYV HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-FEB-05 1YYV TITLE PUTATIVE TRANSCRIPTIONAL REGULATOR YTFH FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: YTFH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTATIVE TRANSCRIPTIONAL REGULATOR, REDUCTIVE METHYLATION, DIMETHYL KEYWDS 2 LYSINE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,P.QUARTEY,L.LEZONDRA,S.MOY,F.COLLART,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 1YYV 1 VERSN REVDAT 2 24-FEB-09 1YYV 1 VERSN REVDAT 1 05-APR-05 1YYV 0 JRNL AUTH J.OSIPIUK,P.QUARTEY,L.LEZONDRA,S.MOY,F.COLLART,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR YTFH FROM SALMONELLA TYPHIMURIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1851 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2510 ; 1.654 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;34.808 ;23.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;18.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.176 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1391 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 862 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1252 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1172 ; 1.127 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 1.813 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 773 ; 2.984 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 690 ; 4.638 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6370 28.0521 34.6926 REMARK 3 T TENSOR REMARK 3 T11: -0.0276 T22: -0.0100 REMARK 3 T33: -0.1115 T12: 0.0908 REMARK 3 T13: -0.0245 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.4358 L22: 0.7569 REMARK 3 L33: 0.9786 L12: -1.3120 REMARK 3 L13: -0.3181 L23: 0.0483 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: 0.0882 S13: -0.2258 REMARK 3 S21: -0.0646 S22: 0.0075 S23: 0.0465 REMARK 3 S31: 0.1431 S32: 0.2900 S33: -0.1246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5998 36.9135 34.6293 REMARK 3 T TENSOR REMARK 3 T11: -0.0164 T22: -0.0299 REMARK 3 T33: -0.0839 T12: 0.0062 REMARK 3 T13: 0.0021 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.2776 L22: 0.5762 REMARK 3 L33: 1.5913 L12: -0.5382 REMARK 3 L13: 0.5752 L23: 0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.0282 S13: -0.0557 REMARK 3 S21: -0.1265 S22: 0.0634 S23: 0.0659 REMARK 3 S31: -0.0608 S32: -0.0224 S33: -0.1473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, ALL DATA WERE USED IN FINAL ROUND OF REFINEMENT. R- REMARK 3 FACTOR-ALL CORRESPONDS TO DEPOSITED FILE. R-WORK AND R-FREE REMARK 3 FACTORS ARE TAKEN FROM SECOND TO LAST ROUND OF REFINEMENT WHICH REMARK 3 USED TEST DATA SET. MLY RESIDUE CORRESPONDS TO N-DIMETHYL-LYSINE REMARK 3 (C8 H18 N2 O2) REMARK 4 REMARK 4 1YYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 22.700 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LYSINE RESIDUES WERE CHEMICALLY DIMETHYLATED AFTER PROTEIN REMARK 200 PURIFICATION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.2 M NACL, SODIUM/ REMARK 280 POTASSIUM PHOSPHATE BUFFER, PH 6.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.55750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.64250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.83625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.64250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.27875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.64250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.64250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.83625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.64250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.64250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.27875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.55750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL MOLECULE REMARK 300 FOR THE PROTEIN IS NOT KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 123 REMARK 465 LEU A 124 REMARK 465 SER A 125 REMARK 465 ASP A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 3 REMARK 465 HIS B 4 REMARK 465 THR B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 LEU B 10 REMARK 465 ARG B 11 REMARK 465 LEU B 124 REMARK 465 SER B 125 REMARK 465 ASP B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 112 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 19 24.5 L L OUTSIDE RANGE REMARK 500 GLU B 18 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC24195 RELATED DB: TARGETDB DBREF 1YYV A 1 128 UNP Q7CP90 Q7CP90_SALTY 1 128 DBREF 1YYV B 1 128 UNP Q7CP90 Q7CP90_SALTY 1 128 SEQADV 1YYV SER A -2 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV ASN A -1 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV ALA A 0 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV MSE A 1 UNP Q7CP90 MET 1 MODIFIED RESIDUE SEQADV 1YYV MLY A 54 UNP Q7CP90 LYS 54 MODIFIED RESIDUE SEQADV 1YYV MSE A 55 UNP Q7CP90 MET 55 MODIFIED RESIDUE SEQADV 1YYV MLY A 61 UNP Q7CP90 LYS 61 MODIFIED RESIDUE SEQADV 1YYV MSE A 62 UNP Q7CP90 MET 62 MODIFIED RESIDUE SEQADV 1YYV MLY A 102 UNP Q7CP90 LYS 102 MODIFIED RESIDUE SEQADV 1YYV SER B -2 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV ASN B -1 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV ALA B 0 UNP Q7CP90 CLONING ARTIFACT SEQADV 1YYV MSE B 1 UNP Q7CP90 MET 1 MODIFIED RESIDUE SEQADV 1YYV MLY B 54 UNP Q7CP90 LYS 54 MODIFIED RESIDUE SEQADV 1YYV MSE B 55 UNP Q7CP90 MET 55 MODIFIED RESIDUE SEQADV 1YYV MLY B 61 UNP Q7CP90 LYS 61 MODIFIED RESIDUE SEQADV 1YYV MSE B 62 UNP Q7CP90 MET 62 MODIFIED RESIDUE SEQADV 1YYV MLY B 102 UNP Q7CP90 LYS 102 MODIFIED RESIDUE SEQRES 1 A 131 SER ASN ALA MSE ARG ALA HIS THR LEU SER ARG GLN LEU SEQRES 2 A 131 ARG GLU GLY ASN LEU PHE ALA GLU GLN CYS PRO SER ARG SEQRES 3 A 131 GLU VAL LEU LYS HIS VAL THR SER ARG TRP GLY VAL LEU SEQRES 4 A 131 ILE LEU VAL ALA LEU ARG ASP GLY THR HIS ARG PHE SER SEQRES 5 A 131 ASP LEU ARG ARG MLY MSE GLY GLY VAL SER GLU MLY MSE SEQRES 6 A 131 LEU ALA GLN SER LEU GLN ALA LEU GLU GLN ASP GLY PHE SEQRES 7 A 131 LEU ASN ARG VAL SER TYR PRO VAL VAL PRO PRO HIS VAL SEQRES 8 A 131 GLU TYR SER LEU THR PRO LEU GLY GLU GLN VAL SER ASP SEQRES 9 A 131 MLY VAL ALA ALA LEU ALA ASP TRP ILE GLU LEU ASN LEU SEQRES 10 A 131 PRO GLN VAL LEU ALA GLN ARG GLU ARG LEU SER ASP GLY SEQRES 11 A 131 GLY SEQRES 1 B 131 SER ASN ALA MSE ARG ALA HIS THR LEU SER ARG GLN LEU SEQRES 2 B 131 ARG GLU GLY ASN LEU PHE ALA GLU GLN CYS PRO SER ARG SEQRES 3 B 131 GLU VAL LEU LYS HIS VAL THR SER ARG TRP GLY VAL LEU SEQRES 4 B 131 ILE LEU VAL ALA LEU ARG ASP GLY THR HIS ARG PHE SER SEQRES 5 B 131 ASP LEU ARG ARG MLY MSE GLY GLY VAL SER GLU MLY MSE SEQRES 6 B 131 LEU ALA GLN SER LEU GLN ALA LEU GLU GLN ASP GLY PHE SEQRES 7 B 131 LEU ASN ARG VAL SER TYR PRO VAL VAL PRO PRO HIS VAL SEQRES 8 B 131 GLU TYR SER LEU THR PRO LEU GLY GLU GLN VAL SER ASP SEQRES 9 B 131 MLY VAL ALA ALA LEU ALA ASP TRP ILE GLU LEU ASN LEU SEQRES 10 B 131 PRO GLN VAL LEU ALA GLN ARG GLU ARG LEU SER ASP GLY SEQRES 11 B 131 GLY MODRES 1YYV MLY A 54 LYS N-DIMETHYL-LYSINE MODRES 1YYV MSE A 55 MET SELENOMETHIONINE MODRES 1YYV MLY A 61 LYS N-DIMETHYL-LYSINE MODRES 1YYV MSE A 62 MET SELENOMETHIONINE MODRES 1YYV MLY A 102 LYS N-DIMETHYL-LYSINE MODRES 1YYV MLY B 54 LYS N-DIMETHYL-LYSINE MODRES 1YYV MSE B 55 MET SELENOMETHIONINE MODRES 1YYV MLY B 61 LYS N-DIMETHYL-LYSINE MODRES 1YYV MSE B 62 MET SELENOMETHIONINE MODRES 1YYV MLY B 102 LYS N-DIMETHYL-LYSINE HET MLY A 54 11 HET MSE A 55 8 HET MLY A 61 11 HET MSE A 62 8 HET MLY A 102 11 HET MLY B 54 11 HET MSE B 55 8 HET MLY B 61 11 HET MSE B 62 8 HET MLY B 102 11 HET CL B 201 1 HET CL A 202 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MLY 6(C8 H18 N2 O2) FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *74(H2 O) HELIX 1 1 PRO A 21 SER A 31 1 11 HELIX 2 2 SER A 31 LEU A 41 1 11 HELIX 3 3 ARG A 42 GLY A 44 5 3 HELIX 4 4 PHE A 48 MSE A 55 1 8 HELIX 5 5 SER A 59 GLY A 74 1 16 HELIX 6 6 THR A 93 ALA A 119 1 27 HELIX 7 7 PRO B 21 SER B 31 1 11 HELIX 8 8 SER B 31 LEU B 41 1 11 HELIX 9 9 ARG B 42 GLY B 44 5 3 HELIX 10 10 PHE B 48 MSE B 55 1 8 HELIX 11 11 SER B 59 ASP B 73 1 15 HELIX 12 12 THR B 93 ASN B 113 1 21 HELIX 13 13 ASN B 113 ARG B 123 1 11 SHEET 1 A 3 HIS A 46 ARG A 47 0 SHEET 2 A 3 HIS A 87 LEU A 92 -1 O TYR A 90 N HIS A 46 SHEET 3 A 3 LEU A 76 TYR A 81 -1 N ASN A 77 O SER A 91 SHEET 1 B 3 HIS B 46 ARG B 47 0 SHEET 2 B 3 HIS B 87 LEU B 92 -1 O TYR B 90 N HIS B 46 SHEET 3 B 3 LEU B 76 TYR B 81 -1 N TYR B 81 O HIS B 87 LINK C ARG A 53 N MLY A 54 1555 1555 1.34 LINK C MLY A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N GLY A 56 1555 1555 1.33 LINK C GLU A 60 N MLY A 61 1555 1555 1.33 LINK C MLY A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N LEU A 63 1555 1555 1.33 LINK C ASP A 101 N MLY A 102 1555 1555 1.34 LINK C MLY A 102 N VAL A 103 1555 1555 1.34 LINK C ARG B 53 N MLY B 54 1555 1555 1.33 LINK C MLY B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N GLY B 56 1555 1555 1.34 LINK C GLU B 60 N MLY B 61 1555 1555 1.33 LINK C MLY B 61 N MSE B 62 1555 1555 1.33 LINK C MSE B 62 N LEU B 63 1555 1555 1.34 LINK C ASP B 101 N MLY B 102 1555 1555 1.32 LINK C MLY B 102 N VAL B 103 1555 1555 1.36 CISPEP 1 VAL A 84 PRO A 85 0 -6.82 CISPEP 2 VAL B 84 PRO B 85 0 -8.65 SITE 1 AC1 4 PHE B 48 SER B 49 HIS B 87 VAL B 88 SITE 1 AC2 3 PHE A 48 HIS A 87 VAL A 88 CRYST1 79.285 79.285 105.115 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009513 0.00000