PDB Short entry for 1Z4Y HEADER HYDROLASE 16-MAR-05 1Z4Y TITLE PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ-NEURAMINIDASE (HN) (PH 8.0) CAVEAT 1Z4Y NAG A 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 EC: 3.2.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 5; SOURCE 3 ORGANISM_TAXID: 11207; SOURCE 4 STRAIN: W3; SOURCE 5 GENE: HN; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBACGUS-3 KEYWDS HEMAGGLUTININ, NEURAMINIDASE, FUSION, TETRAMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.YUAN,T.B.THOMPSON,B.A.WURZBURG,R.G.PATERSON,R.A.LAMB,T.S.JARDETZKY REVDAT 5 23-AUG-23 1Z4Y 1 HETSYN REVDAT 4 29-JUL-20 1Z4Y 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HET HETNAM FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 13-JUL-11 1Z4Y 1 VERSN REVDAT 2 24-FEB-09 1Z4Y 1 VERSN REVDAT 1 24-MAY-05 1Z4Y 0 JRNL AUTH P.YUAN,T.B.THOMPSON,B.A.WURZBURG,R.G.PATERSON,R.A.LAMB, JRNL AUTH 2 T.S.JARDETZKY JRNL TITL STRUCTURAL STUDIES OF THE PARAINFLUENZA VIRUS 5 JRNL TITL 2 HEMAGGLUTININ-NEURAMINIDASE TETRAMER IN COMPLEX WITH ITS JRNL TITL 3 RECEPTOR, SIALYLLACTOSE. JRNL REF STRUCTURE V. 13 803 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15893670 JRNL DOI 10.1016/J.STR.2005.02.019 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 31331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.70800 REMARK 3 B22 (A**2) : -2.70800 REMARK 3 B33 (A**2) : 5.41500 REMARK 3 B12 (A**2) : -3.26100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 29.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1E8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MME, NACL, TRIS, PH 8.0, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.65000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.30000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.47500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 154.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.82500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.30000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 154.12500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.47500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 68.80000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -119.16510 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 30.82500 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 206.40000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 119.16510 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -246.60000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 275.20000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -277.42500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 275.20000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -277.42500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 PRO A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 LEU A 39 REMARK 465 ILE A 40 REMARK 465 THR A 41 REMARK 465 GLN A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 ILE A 45 REMARK 465 MET A 46 REMARK 465 SER A 47 REMARK 465 GLN A 48 REMARK 465 ALA A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 ASN A 55 REMARK 465 SER A 56 REMARK 465 GLY A 57 REMARK 465 LEU A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 ILE A 61 REMARK 465 THR A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 64 REMARK 465 LEU A 65 REMARK 465 ASN A 66 REMARK 465 ASN A 67 REMARK 465 ILE A 68 REMARK 465 LEU A 69 REMARK 465 SER A 70 REMARK 465 VAL A 71 REMARK 465 ALA A 72 REMARK 465 ASN A 73 REMARK 465 GLN A 74 REMARK 465 ILE A 75 REMARK 465 ILE A 76 REMARK 465 TYR A 77 REMARK 465 ASN A 78 REMARK 465 SER A 79 REMARK 465 ALA A 80 REMARK 465 VAL A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 PRO A 84 REMARK 465 LEU A 85 REMARK 465 GLN A 86 REMARK 465 LEU A 87 REMARK 465 ASP A 88 REMARK 465 THR A 89 REMARK 465 LEU A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 THR A 93 REMARK 465 LEU A 94 REMARK 465 LEU A 95 REMARK 465 THR A 96 REMARK 465 ALA A 97 REMARK 465 ILE A 98 REMARK 465 LYS A 99 REMARK 465 SER A 100 REMARK 465 LEU A 101 REMARK 465 GLN A 102 REMARK 465 THR A 103 REMARK 465 SER A 104 REMARK 465 ASP A 105 REMARK 465 LYS A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 GLN A 109 REMARK 465 ASN A 110 REMARK 465 CYS A 111 REMARK 465 SER A 112 REMARK 465 TRP A 113 REMARK 465 SER A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 LEU A 117 REMARK 465 GLN A 186 REMARK 465 ASP A 187 REMARK 465 HIS A 188 REMARK 465 VAL A 189 REMARK 465 SER A 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 183 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 220 18.94 -153.21 REMARK 500 THR A 291 -22.19 78.92 REMARK 500 LEU A 298 49.63 36.61 REMARK 500 PHE A 353 67.71 -100.72 REMARK 500 THR A 372 -72.84 -139.14 REMARK 500 SER A 408 -147.17 -110.39 REMARK 500 ALA A 429 147.11 -170.36 REMARK 500 GLN A 438 23.37 -143.96 REMARK 500 VAL A 440 92.88 74.81 REMARK 500 ARG A 453 -3.02 -143.24 REMARK 500 LEU A 459 61.27 -151.50 REMARK 500 ALA A 464 88.43 -154.30 REMARK 500 ASN A 504 -164.94 -106.95 REMARK 500 ALA A 522 -110.29 -142.13 REMARK 500 LEU A 549 -71.91 -90.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 O REMARK 620 2 SER A 253 OG 93.5 REMARK 620 3 SER A 253 O 92.4 72.4 REMARK 620 4 ALA A 255 O 179.2 85.7 87.2 REMARK 620 5 ALA A 285 O 91.7 169.1 97.9 89.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z4V RELATED DB: PDB REMARK 900 RELATED ID: 1Z4X RELATED DB: PDB REMARK 900 RELATED ID: 1Z4W RELATED DB: PDB REMARK 900 RELATED ID: 1Z4Z RELATED DB: PDB REMARK 900 RELATED ID: 1Z50 RELATED DB: PDB DBREF 1Z4Y A 37 565 UNP P04850 HEMA_SV5 37 565 SEQADV 1Z4Y SER A 34 UNP P04850 CLONING ARTIFACT SEQADV 1Z4Y PRO A 35 UNP P04850 CLONING ARTIFACT SEQADV 1Z4Y SER A 36 UNP P04850 CLONING ARTIFACT SEQRES 1 A 532 SER PRO SER GLU SER LEU ILE THR GLN LYS GLN ILE MET SEQRES 2 A 532 SER GLN ALA GLY SER THR GLY SER ASN SER GLY LEU GLY SEQRES 3 A 532 SER ILE THR ASP LEU LEU ASN ASN ILE LEU SER VAL ALA SEQRES 4 A 532 ASN GLN ILE ILE TYR ASN SER ALA VAL ALA LEU PRO LEU SEQRES 5 A 532 GLN LEU ASP THR LEU GLU SER THR LEU LEU THR ALA ILE SEQRES 6 A 532 LYS SER LEU GLN THR SER ASP LYS LEU GLU GLN ASN CYS SEQRES 7 A 532 SER TRP SER ALA ALA LEU ILE ASN ASP ASN ARG TYR ILE SEQRES 8 A 532 ASN GLY ILE ASN GLN PHE TYR PHE SER ILE ALA GLU GLY SEQRES 9 A 532 ARG ASN LEU THR LEU GLY PRO LEU LEU ASN MET PRO SER SEQRES 10 A 532 PHE ILE PRO THR ALA THR THR PRO GLU GLY CYS THR ARG SEQRES 11 A 532 ILE PRO SER PHE SER LEU THR LYS THR HIS TRP CYS TYR SEQRES 12 A 532 THR HIS ASN VAL ILE LEU ASN GLY CYS GLN ASP HIS VAL SEQRES 13 A 532 SER SER ASN GLN PHE VAL SER MET GLY ILE ILE GLU PRO SEQRES 14 A 532 THR SER ALA GLY PHE PRO PHE PHE ARG THR LEU LYS THR SEQRES 15 A 532 LEU TYR LEU SER ASP GLY VAL ASN ARG LYS SER CYS SER SEQRES 16 A 532 ILE SER THR VAL PRO GLY GLY CYS MET MET TYR CYS PHE SEQRES 17 A 532 VAL SER THR GLN PRO GLU ARG ASP ASP TYR PHE SER ALA SEQRES 18 A 532 ALA PRO PRO GLU GLN ARG ILE ILE ILE MET TYR TYR ASN SEQRES 19 A 532 ASP THR ILE VAL GLU ARG ILE ILE ASN PRO PRO GLY VAL SEQRES 20 A 532 LEU ASP VAL TRP ALA THR LEU ASN PRO GLY THR GLY SER SEQRES 21 A 532 GLY VAL TYR TYR LEU GLY TRP VAL LEU PHE PRO ILE TYR SEQRES 22 A 532 GLY GLY VAL ILE LYS GLY THR SER LEU TRP ASN ASN GLN SEQRES 23 A 532 ALA ASN LYS TYR PHE ILE PRO GLN MET VAL ALA ALA LEU SEQRES 24 A 532 CYS SER GLN ASN GLN ALA THR GLN VAL GLN ASN ALA LYS SEQRES 25 A 532 SER SER TYR TYR SER SER TRP PHE GLY ASN ARG MET ILE SEQRES 26 A 532 GLN SER GLY ILE LEU ALA CYS PRO LEU ARG GLN ASP LEU SEQRES 27 A 532 THR ASN GLU CYS LEU VAL LEU PRO PHE SER ASN ASP GLN SEQRES 28 A 532 VAL LEU MET GLY ALA GLU GLY ARG LEU TYR MET TYR GLY SEQRES 29 A 532 ASP SER VAL TYR TYR TYR GLN ARG SER ASN SER TRP TRP SEQRES 30 A 532 PRO MET THR MET LEU TYR LYS VAL THR ILE THR PHE THR SEQRES 31 A 532 ASN GLY GLN PRO SER ALA ILE SER ALA GLN ASN VAL PRO SEQRES 32 A 532 THR GLN GLN VAL PRO ARG PRO GLY THR GLY ASP CYS SER SEQRES 33 A 532 ALA THR ASN ARG CYS PRO GLY PHE CYS LEU THR GLY VAL SEQRES 34 A 532 TYR ALA ASP ALA TRP LEU LEU THR ASN PRO SER SER THR SEQRES 35 A 532 SER THR PHE GLY SER GLU ALA THR PHE THR GLY SER TYR SEQRES 36 A 532 LEU ASN THR ALA THR GLN ARG ILE ASN PRO THR MET TYR SEQRES 37 A 532 ILE ALA ASN ASN THR GLN ILE ILE SER SER GLN GLN PHE SEQRES 38 A 532 GLY SER SER GLY GLN GLU ALA ALA TYR GLY HIS THR THR SEQRES 39 A 532 CYS PHE ARG ASP THR GLY SER VAL MET VAL TYR CYS ILE SEQRES 40 A 532 TYR ILE ILE GLU LEU SER SER SER LEU LEU GLY GLN PHE SEQRES 41 A 532 GLN ILE VAL PRO PHE ILE ARG GLN VAL THR LEU SER MODRES 1Z4Y ASN A 139 ASN GLYCOSYLATION SITE MODRES 1Z4Y ASN A 267 ASN GLYCOSYLATION SITE MODRES 1Z4Y ASN A 504 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 1 14 HET CA A 600 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 5 CA CA 2+ FORMUL 6 HOH *192(H2 O) HELIX 1 1 SER A 133 ARG A 138 1 6 HELIX 2 2 PRO A 246 SER A 253 1 8 HELIX 3 3 THR A 313 ALA A 320 1 8 HELIX 4 4 ASN A 336 SER A 347 1 12 HELIX 5 5 THR A 445 SER A 449 5 5 HELIX 6 6 ASN A 471 THR A 475 5 5 SHEET 1 A 4 LEU A 140 LEU A 146 0 SHEET 2 A 4 PHE A 553 LEU A 564 -1 O GLN A 561 N GLY A 143 SHEET 3 A 4 MET A 536 SER A 546 -1 N TYR A 541 O PHE A 558 SHEET 4 A 4 ALA A 521 ASP A 531 -1 N THR A 527 O ILE A 540 SHEET 1 B 4 CYS A 161 LEU A 169 0 SHEET 2 B 4 TRP A 174 ILE A 181 -1 O CYS A 175 N SER A 168 SHEET 3 B 4 ASN A 192 PRO A 202 -1 O SER A 196 N TYR A 176 SHEET 4 B 4 PRO A 208 LEU A 218 -1 O LEU A 216 N VAL A 195 SHEET 1 C 4 ARG A 224 VAL A 232 0 SHEET 2 C 4 GLY A 235 VAL A 242 -1 O TYR A 239 N SER A 228 SHEET 3 C 4 GLU A 258 TYR A 265 -1 O ILE A 262 N MET A 238 SHEET 4 C 4 ILE A 270 ILE A 275 -1 O VAL A 271 N ILE A 263 SHEET 1 D 4 TRP A 284 PRO A 289 0 SHEET 2 D 4 TRP A 300 VAL A 309 -1 O TYR A 306 N ASN A 288 SHEET 3 D 4 ARG A 356 PRO A 366 -1 O CYS A 365 N VAL A 301 SHEET 4 D 4 TYR A 349 SER A 350 -1 N SER A 350 O ARG A 356 SHEET 1 E 4 VAL A 295 TYR A 297 0 SHEET 2 E 4 TRP A 300 VAL A 309 -1 O LEU A 302 N VAL A 295 SHEET 3 E 4 ARG A 356 PRO A 366 -1 O CYS A 365 N VAL A 301 SHEET 4 E 4 LEU A 376 PRO A 379 -1 O LEU A 378 N ILE A 362 SHEET 1 F 4 GLY A 391 TYR A 396 0 SHEET 2 F 4 SER A 399 GLN A 404 -1 O TYR A 403 N ARG A 392 SHEET 3 F 4 MET A 414 PHE A 422 -1 O TYR A 416 N TYR A 402 SHEET 4 F 4 PRO A 427 ASN A 434 -1 O SER A 428 N THR A 421 SHEET 1 G 4 ALA A 466 LEU A 468 0 SHEET 2 G 4 PHE A 484 LEU A 489 -1 O THR A 485 N TRP A 467 SHEET 3 G 4 PRO A 498 ALA A 503 -1 O ALA A 503 N PHE A 484 SHEET 4 G 4 ILE A 508 GLN A 513 -1 O GLN A 512 N MET A 500 SSBOND 1 CYS A 161 CYS A 185 1555 1555 2.04 SSBOND 2 CYS A 175 CYS A 236 1555 1555 2.04 SSBOND 3 CYS A 227 CYS A 240 1555 1555 2.04 SSBOND 4 CYS A 365 CYS A 375 1555 1555 2.05 SSBOND 5 CYS A 448 CYS A 458 1555 1555 2.03 SSBOND 6 CYS A 528 CYS A 539 1555 1555 2.03 LINK C1 NAG A 1 ND2 ASN A 139 1555 1555 1.45 LINK ND2 ASN A 267 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 504 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O ASP A 250 CA CA A 600 1555 1555 2.20 LINK OG SER A 253 CA CA A 600 1555 1555 2.37 LINK O SER A 253 CA CA A 600 1555 1555 2.44 LINK O ALA A 255 CA CA A 600 1555 1555 2.28 LINK O ALA A 285 CA CA A 600 1555 1555 2.17 CRYST1 137.600 137.600 184.950 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007267 0.004196 0.000000 0.00000 SCALE2 0.000000 0.008392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005407 0.00000