PDB Short entry for 1Z70 HEADER OXIDOREDUCTASE 23-MAR-05 1Z70 TITLE 1.15A RESOLUTION STRUCTURE OF THE FORMYLGLYCINE GENERATING ENZYME FGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-ALPHA-FORMYGLYCINE-GENERATING ENZYME; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HT1080; SOURCE 9 EXPRESSION_SYSTEM_CELL: FIBROSARCOMA TUMOR CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSB4.7PA KEYWDS FORMYLGLYCINE, MULTIPLE SULFATASE DEFICIENCY, CYSTEINE SULFENIC ACID, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH REVDAT 5 23-AUG-23 1Z70 1 HETSYN REVDAT 4 29-JUL-20 1Z70 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 1Z70 1 VERSN REVDAT 2 24-FEB-09 1Z70 1 VERSN REVDAT 1 22-JUL-05 1Z70 0 JRNL AUTH D.ROESER,A.DICKMANNS,K.GASOW,M.G.RUDOLPH JRNL TITL DE NOVO CALCIUM/SULFUR SAD PHASING OF THE HUMAN JRNL TITL 2 FORMYLGLYCINE-GENERATING ENZYME USING IN-HOUSE DATA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1057 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16041070 JRNL DOI 10.1107/S0907444905013831 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0009 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 89044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.1710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 546 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2426 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2058 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3320 ; 1.769 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4819 ; 1.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;33.719 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;13.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2664 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 513 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 510 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2120 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1175 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1221 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 395 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.069 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1446 ; 2.291 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 568 ; 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2286 ; 3.178 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 3.757 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1034 ; 5.189 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5215 ; 1.552 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 549 ; 9.773 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4401 ; 5.451 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUE 1174 DID NOT SHOW INTERPRETABLE SIDE-CHAIN REMARK 3 DENSITY. REMARK 4 REMARK 4 1Z70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.12900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1Y1E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.14750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.88250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.14750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.88250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X5508 LIES ON A SPECIAL POSITION. REMARK 375 HOH X5512 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU X 1073 REMARK 465 ALA X 1074 REMARK 465 ASN X 1075 REMARK 465 ALA X 1076 REMARK 465 PRO X 1077 REMARK 465 GLY X 1078 REMARK 465 PRO X 1079 REMARK 465 VAL X 1080 REMARK 465 PRO X 1081 REMARK 465 GLY X 1082 REMARK 465 GLU X 1083 REMARK 465 ARG X 1084 REMARK 465 GLN X 1085 REMARK 465 GLU X 1164 REMARK 465 GLN X 1165 REMARK 465 VAL X 1166 REMARK 465 LYS X 1167 REMARK 465 THR X 1168 REMARK 465 ASN X 1169 REMARK 465 ILE X 1170 REMARK 465 GLN X 1171 REMARK 465 GLN X 1172 REMARK 465 ALA X 1173 REMARK 465 THR X 1372 REMARK 465 MET X 1373 REMARK 465 ASP X 1374 REMARK 465 ARG X 1375 REMARK 465 GLY X 1376 REMARK 465 SER X 1377 REMARK 465 HIS X 1378 REMARK 465 HIS X 1379 REMARK 465 HIS X 1380 REMARK 465 HIS X 1381 REMARK 465 HIS X 1382 REMARK 465 HIS X 1383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL X1174 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 5168 O HOH X 5243 2.00 REMARK 500 O HOH X 5196 O HOH X 5281 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 5154 O HOH X 5300 4556 2.06 REMARK 500 O HOH X 5245 O HOH X 5328 4457 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X1189 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG X1345 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG X1349 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP X1368 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X1175 135.06 167.96 REMARK 500 LYS X1223 -165.07 -129.08 REMARK 500 ILE X1260 -162.67 -129.34 REMARK 500 PHE X1284 164.66 72.80 REMARK 500 ASN X1297 -100.99 72.09 REMARK 500 OCS X1341 86.04 -151.01 REMARK 500 TYR X1344 34.05 -90.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X3001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X1130 OE2 REMARK 620 2 ASN X1293 O 92.3 REMARK 620 3 GLY X1296 O 93.8 86.4 REMARK 620 4 ALA X1298 O 86.0 174.2 88.2 REMARK 620 5 GLU X1300 OE2 95.5 81.7 165.1 104.0 REMARK 620 6 HOH X5002 O 160.8 106.4 83.1 75.0 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X3002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X1259 OD1 REMARK 620 2 ILE X1260 O 100.0 REMARK 620 3 ASP X1273 OD1 93.6 124.1 REMARK 620 4 ASP X1273 OD2 87.0 73.1 53.7 REMARK 620 5 PHE X1275 O 92.2 152.2 79.4 132.9 REMARK 620 6 HOH X5004 O 92.2 74.6 158.9 147.0 80.1 REMARK 620 7 HOH X5006 O 175.0 84.9 84.4 95.4 83.0 88.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y1E RELATED DB: PDB REMARK 900 RELATED ID: 1Y1F RELATED DB: PDB REMARK 900 RELATED ID: 1Y1G RELATED DB: PDB REMARK 900 RELATED ID: 1Y1H RELATED DB: PDB REMARK 900 RELATED ID: 1Y1I RELATED DB: PDB REMARK 900 RELATED ID: 1Y1J RELATED DB: PDB DBREF 1Z70 X 1073 1374 GB 30840149 AAO34683 73 374 SEQADV 1Z70 OCS X 1336 GB 30840149 CYS 336 MODIFIED RESIDUE SEQADV 1Z70 OCS X 1341 GB 30840149 CYS 341 MODIFIED RESIDUE SEQADV 1Z70 ARG X 1375 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 GLY X 1376 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 SER X 1377 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1378 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1379 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1380 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1381 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1382 GB 30840149 CLONING ARTIFACT SEQADV 1Z70 HIS X 1383 GB 30840149 CLONING ARTIFACT SEQRES 1 X 311 GLU ALA ASN ALA PRO GLY PRO VAL PRO GLY GLU ARG GLN SEQRES 2 X 311 LEU ALA HIS SER LYS MET VAL PRO ILE PRO ALA GLY VAL SEQRES 3 X 311 PHE THR MET GLY THR ASP ASP PRO GLN ILE LYS GLN ASP SEQRES 4 X 311 GLY GLU ALA PRO ALA ARG ARG VAL THR ILE ASP ALA PHE SEQRES 5 X 311 TYR MET ASP ALA TYR GLU VAL SER ASN THR GLU PHE GLU SEQRES 6 X 311 LYS PHE VAL ASN SER THR GLY TYR LEU THR GLU ALA GLU SEQRES 7 X 311 LYS PHE GLY ASP SER PHE VAL PHE GLU GLY MET LEU SER SEQRES 8 X 311 GLU GLN VAL LYS THR ASN ILE GLN GLN ALA VAL ALA ALA SEQRES 9 X 311 ALA PRO TRP TRP LEU PRO VAL LYS GLY ALA ASN TRP ARG SEQRES 10 X 311 HIS PRO GLU GLY PRO ASP SER THR ILE LEU HIS ARG PRO SEQRES 11 X 311 ASP HIS PRO VAL LEU HIS VAL SER TRP ASN ASP ALA VAL SEQRES 12 X 311 ALA TYR CYS THR TRP ALA GLY LYS ARG LEU PRO THR GLU SEQRES 13 X 311 ALA GLU TRP GLU TYR SER CYS ARG GLY GLY LEU HIS ASN SEQRES 14 X 311 ARG LEU PHE PRO TRP GLY ASN LYS LEU GLN PRO LYS GLY SEQRES 15 X 311 GLN HIS TYR ALA ASN ILE TRP GLN GLY GLU PHE PRO VAL SEQRES 16 X 311 THR ASN THR GLY GLU ASP GLY PHE GLN GLY THR ALA PRO SEQRES 17 X 311 VAL ASP ALA PHE PRO PRO ASN GLY TYR GLY LEU TYR ASN SEQRES 18 X 311 ILE VAL GLY ASN ALA TRP GLU TRP THR SER ASP TRP TRP SEQRES 19 X 311 THR VAL HIS HIS SER VAL GLU GLU THR LEU ASN PRO LYS SEQRES 20 X 311 GLY PRO PRO SER GLY LYS ASP ARG VAL LYS LYS GLY GLY SEQRES 21 X 311 SER TYR MET OCS HIS ARG SER TYR OCS TYR ARG TYR ARG SEQRES 22 X 311 CYS ALA ALA ARG SER GLN ASN THR PRO ASP SER SER ALA SEQRES 23 X 311 SER ASN LEU GLY PHE ARG CYS ALA ALA ASP ARG LEU PRO SEQRES 24 X 311 THR MET ASP ARG GLY SER HIS HIS HIS HIS HIS HIS MODRES 1Z70 ASN X 1141 ASN GLYCOSYLATION SITE MODRES 1Z70 OCS X 1336 CYS CYSTEINESULFONIC ACID MODRES 1Z70 OCS X 1341 CYS CYSTEINESULFONIC ACID HET OCS X1336 9 HET OCS X1341 14 HET NAG A 1 14 HET NAG A 2 14 HET CA X3001 1 HET CA X3002 1 HET CL X3003 1 HET CXS X3004 28 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 CXS C9 H19 N O3 S FORMUL 7 HOH *546(H2 O) HELIX 1 1 ILE X 1108 GLY X 1112 5 5 HELIX 2 2 SER X 1132 GLY X 1144 1 13 HELIX 3 3 THR X 1147 GLY X 1153 1 7 HELIX 4 4 GLY X 1160 LEU X 1162 5 3 HELIX 5 5 SER X 1210 ALA X 1221 1 12 HELIX 6 6 THR X 1227 GLY X 1237 1 11 HELIX 7 7 GLN X 1251 GLN X 1255 5 5 SHEET 1 A 3 MET X1091 ILE X1094 0 SHEET 2 A 3 PHE X1124 ASP X1127 -1 O PHE X1124 N ILE X1094 SHEET 3 A 3 ALA X1366 ALA X1367 -1 O ALA X1367 N TYR X1125 SHEET 1 B 3 GLY X1097 MET X1101 0 SHEET 2 B 3 ARG X1117 ILE X1121 -1 O ARG X1117 N MET X1101 SHEET 3 B 3 THR X1315 LEU X1316 1 O THR X1315 N THR X1120 SHEET 1 C 2 ASP X1154 PHE X1158 0 SHEET 2 C 2 TRP X1180 LYS X1184 -1 O VAL X1183 N SER X1155 SHEET 1 D 2 GLY X1263 GLU X1264 0 SHEET 2 D 2 THR X1268 ASN X1269 -1 O THR X1268 N GLU X1264 SHEET 1 E 4 SER X1350 ASN X1352 0 SHEET 2 E 4 ARG X1327 LYS X1330 -1 N ARG X1327 O ASN X1352 SHEET 3 E 4 TRP X1299 TRP X1305 -1 N ASP X1304 O VAL X1328 SHEET 4 E 4 LEU X1361 GLY X1362 1 O GLY X1362 N TRP X1299 SSBOND 1 CYS X 1218 CYS X 1365 1555 1555 2.10 SSBOND 2 CYS X 1235 CYS X 1346 1555 1555 2.08 LINK ND2 ASN X1141 C1 NAG A 1 1555 1555 1.47 LINK C MET X1335 N OCS X1336 1555 1555 1.34 LINK C OCS X1336 N HIS X1337 1555 1555 1.33 LINK C TYR X1340 N OCS X1341 1555 1555 1.32 LINK C OCS X1341 N TYR X1342 1555 1555 1.32 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK OE2 GLU X1130 CA CA X3001 1555 1555 2.31 LINK OD1 ASN X1259 CA CA X3002 1555 1555 2.33 LINK O ILE X1260 CA CA X3002 1555 1555 2.35 LINK OD1 ASP X1273 CA CA X3002 1555 1555 2.47 LINK OD2 ASP X1273 CA CA X3002 1555 1555 2.48 LINK O PHE X1275 CA CA X3002 1555 1555 2.35 LINK O ASN X1293 CA CA X3001 1555 1555 2.34 LINK O GLY X1296 CA CA X3001 1555 1555 2.40 LINK O ALA X1298 CA CA X3001 1555 1555 2.36 LINK OE2 GLU X1300 CA CA X3001 1555 1555 2.35 LINK CA CA X3001 O HOH X5002 1555 1555 2.37 LINK CA CA X3002 O HOH X5004 1555 1555 2.38 LINK CA CA X3002 O HOH X5006 1555 1555 2.38 CISPEP 1 ALA X 1114 PRO X 1115 0 -0.91 CISPEP 2 PHE X 1265 PRO X 1266 0 1.43 CRYST1 62.295 109.765 43.511 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022983 0.00000