PDB Short entry for 1ZFO HEADER METAL BINDING PROTEIN 06-MAY-96 1ZFO TITLE AMINO-TERMINAL LIM-DOMAIN PEPTIDE OF LASP-1, NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LASP-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-1 AMINO-TERMINAL LIM-DOMAIN PEPTIDE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: IDENTICAL TO 30 N-TERMINAL RESIDUES OF HUMAN LASP-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: INTESTINE KEYWDS LIM DOMAIN, ZINC-FINGER, METAL-BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.HAMMARSTROM,K.D.BERNDT,R.SILLARD,K.ADERMANN,G.OTTING REVDAT 3 02-MAR-22 1ZFO 1 KEYWDS REMARK LINK REVDAT 2 24-FEB-09 1ZFO 1 VERSN REVDAT 1 08-NOV-96 1ZFO 0 JRNL AUTH A.HAMMARSTROM,K.D.BERNDT,R.SILLARD,K.ADERMANN,G.OTTING JRNL TITL SOLUTION STRUCTURE OF A NATURALLY-OCCURRING ZINC-PEPTIDE JRNL TITL 2 COMPLEX DEMONSTRATES THAT THE N-TERMINAL ZINC-BINDING MODULE JRNL TITL 3 OF THE LASP-1 LIM DOMAIN IS AN INDEPENDENT FOLDING UNIT. JRNL REF BIOCHEMISTRY V. 35 12723 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841116 JRNL DOI 10.1021/BI961149J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL,GUNTERT,BILLETER,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZFO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177473. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 -57.49 -122.55 REMARK 500 1 LYS A 17 79.96 -68.40 REMARK 500 1 ASP A 22 -1.17 -154.84 REMARK 500 2 ARG A 7 -54.96 -126.56 REMARK 500 2 LYS A 17 97.96 -20.89 REMARK 500 2 CYS A 20 -155.33 -144.48 REMARK 500 2 LEU A 21 -72.27 -46.25 REMARK 500 2 ASP A 22 16.18 -151.68 REMARK 500 3 ALA A 6 6.76 -69.49 REMARK 500 3 ARG A 7 -70.60 -94.27 REMARK 500 3 GLU A 16 50.01 -141.83 REMARK 500 3 LEU A 21 179.10 165.58 REMARK 500 4 GLU A 16 45.21 -144.33 REMARK 500 4 CYS A 20 25.90 -141.65 REMARK 500 4 LEU A 21 -95.19 -150.95 REMARK 500 4 ASP A 22 4.71 -151.56 REMARK 500 5 ARG A 7 -67.80 -95.33 REMARK 500 5 GLU A 16 -73.51 -105.94 REMARK 500 5 LYS A 17 74.53 23.90 REMARK 500 5 LEU A 21 -152.98 -151.59 REMARK 500 6 ARG A 7 -69.63 -93.83 REMARK 500 6 LYS A 17 95.87 -47.49 REMARK 500 6 CYS A 20 -143.79 -150.30 REMARK 500 6 LEU A 21 -73.92 -44.84 REMARK 500 6 ASP A 22 22.18 -155.91 REMARK 500 7 ARG A 7 -69.24 -95.12 REMARK 500 8 THR A 15 -72.96 -144.96 REMARK 500 8 LYS A 17 97.55 -52.33 REMARK 500 8 CYS A 20 24.21 -154.42 REMARK 500 8 LEU A 21 174.82 158.57 REMARK 500 9 THR A 15 -23.27 173.93 REMARK 500 9 TRP A 25 -158.00 -136.54 REMARK 500 10 PRO A 3 173.32 -59.79 REMARK 500 10 ARG A 7 -66.98 -94.62 REMARK 500 10 LYS A 17 93.25 -53.43 REMARK 500 10 LEU A 21 -95.85 -152.54 REMARK 500 10 LYS A 27 -71.06 -34.05 REMARK 500 11 THR A 15 -65.36 173.79 REMARK 500 11 LYS A 17 64.44 -42.33 REMARK 500 11 VAL A 18 107.18 -53.59 REMARK 500 11 LEU A 21 -91.39 -149.61 REMARK 500 12 ALA A 6 6.17 -63.80 REMARK 500 13 LYS A 17 106.00 -51.77 REMARK 500 13 LEU A 21 -156.67 -165.22 REMARK 500 13 ASP A 22 43.94 -83.71 REMARK 500 13 LYS A 27 -70.28 -37.62 REMARK 500 14 LYS A 17 110.97 -35.65 REMARK 500 14 CYS A 20 -158.76 -145.70 REMARK 500 14 LEU A 21 -72.25 -34.39 REMARK 500 15 ARG A 7 -68.55 -94.16 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 7 0.11 SIDE CHAIN REMARK 500 19 ARG A 7 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 31 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 8 SG 97.5 REMARK 620 3 HIS A 26 ND1 110.0 104.6 REMARK 620 4 CYS A 29 SG 110.0 113.6 119.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 31 DBREF 1ZFO A 1 30 UNP P80171 LASP1_PIG 1 30 SEQRES 1 A 31 ACE MET ASN PRO ASN CYS ALA ARG CYS GLY LYS ILE VAL SEQRES 2 A 31 TYR PRO THR GLU LYS VAL ASN CYS LEU ASP LYS PHE TRP SEQRES 3 A 31 HIS LYS ALA CYS PHE HET ACE A 0 6 HET ZN A 31 1 HETNAM ACE ACETYL GROUP HETNAM ZN ZINC ION FORMUL 1 ACE C2 H4 O FORMUL 2 ZN ZN 2+ HELIX 1 1 TYR A 13 LYS A 17 5 5 HELIX 2 2 HIS A 26 PHE A 30 5 5 SHEET 1 S1 2 LYS A 10 VAL A 12 0 SHEET 2 S1 2 PRO A 3 ALA A 6 -1 N CYS A 5 O LYS A 10 SHEET 1 S2 2 PHE A 24 HIS A 26 0 SHEET 2 S2 2 LYS A 17 VAL A 18 1 N VAL A 18 O TRP A 25 LINK C ACE A 0 N MET A 1 1555 1555 1.34 LINK SG CYS A 5 ZN ZN A 31 1555 1555 2.30 LINK SG CYS A 8 ZN ZN A 31 1555 1555 2.28 LINK ND1 HIS A 26 ZN ZN A 31 1555 1555 1.98 LINK SG CYS A 29 ZN ZN A 31 1555 1555 2.32 SITE 1 AC1 4 CYS A 5 CYS A 8 HIS A 26 CYS A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000