PDB Short entry for 1ZKG HEADER TRANSCRIPTION REGULATOR 02-MAY-05 1ZKG TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR, TETR FAMILY (TM1030) TITLE 2 FROM THERMOTOGA MARITIMA AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TM1030, TRANSCRIPTIONAL REGULATOR, TETR FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 1ZKG 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1ZKG 1 VERSN REVDAT 3 24-FEB-09 1ZKG 1 VERSN REVDAT 2 24-JUL-07 1ZKG 1 JRNL REVDAT 1 26-JUL-05 1ZKG 0 JRNL AUTH L.PREMKUMAR,C.L.RIFE,S.SRI KRISHNA,D.MCMULLAN,M.D.MILLER, JRNL AUTH 2 P.ABDUBEK,E.AMBING,T.ASTAKHOVA,H.L.AXELROD,J.M.CANAVES, JRNL AUTH 3 D.CARLTON,H.J.CHIU,T.CLAYTON,M.DIDONATO,L.DUAN,M.A.ELSLIGER, JRNL AUTH 4 J.FEUERHELM,R.FLOYD,S.K.GRZECHNIK,J.HALE,E.HAMPTON,G.W.HAN, JRNL AUTH 5 J.HAUGEN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH, JRNL AUTH 6 E.KOESEMA,J.S.KOVARIK,A.KREUSCH,I.LEVIN,T.M.MCPHILLIPS, JRNL AUTH 7 A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH,S.OOMMACHEN,J.PAULSEN, JRNL AUTH 8 K.QUIJANO,R.REYES,F.REZEZADEH,D.RODIONOV,R.SCHWARZENBACHER, JRNL AUTH 9 G.SPRAGGON,H.VAN DEN BEDEM,A.WHITE,G.WOLF,Q.XU,K.O.HODGSON, JRNL AUTH10 J.WOOLEY,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF TM1030 FROM THERMOTOGA MARITIMA AT 2.3 JRNL TITL 2 A RESOLUTION REVEALS MOLECULAR DETAILS OF ITS TRANSCRIPTION JRNL TITL 3 REPRESSOR FUNCTION. JRNL REF PROTEINS V. 68 418 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17444523 JRNL DOI 10.1002/PROT.21436 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.01000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.330 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3333 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3102 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4477 ; 1.357 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7183 ; 0.810 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;33.535 ;24.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;15.877 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3648 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 716 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 885 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2944 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1667 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1936 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.228 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2179 ; 2.511 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 815 ; 0.628 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3190 ; 3.161 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 6.264 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1286 ; 8.497 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 200 5 REMARK 3 1 A 2 A 200 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 1181 ; 0.55 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 B (A): 1942 ; 0.89 ; 5.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1181 ; 1.09 ; 2.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1942 ; 2.89 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7740 41.9510 12.2800 REMARK 3 T TENSOR REMARK 3 T11: -0.0453 T22: -0.0307 REMARK 3 T33: -0.0749 T12: -0.0029 REMARK 3 T13: 0.0914 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 6.2907 L22: 0.9879 REMARK 3 L33: 3.2389 L12: -2.0108 REMARK 3 L13: 4.5064 L23: -1.5012 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: -0.2466 S13: -0.3394 REMARK 3 S21: 0.0861 S22: 0.3366 S23: 0.1209 REMARK 3 S31: -0.2274 S32: -0.1662 S33: -0.2237 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1990 57.5280 -12.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: -0.0727 REMARK 3 T33: -0.0702 T12: -0.0323 REMARK 3 T13: -0.0729 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 3.9597 L22: 0.8507 REMARK 3 L33: 0.7065 L12: 0.6848 REMARK 3 L13: -1.3657 L23: -0.6514 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: -0.0586 S13: 0.3056 REMARK 3 S21: -0.0319 S22: 0.1836 S23: 0.0444 REMARK 3 S31: 0.0181 S32: -0.0121 S33: -0.0523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. DENSITY NEAR A89 AND B89 MODELED AS UNL BASED ON REMARK 3 SIMILARITY TO PDB 1VI0 (LIKELY PART OF A COA MOIETY) REMARK 4 REMARK 4 1ZKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370, 0.979508 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0% PEG-8000, 0.2M MGNO3, 0.1M REMARK 280 CITRATE PH 4.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.55450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS REMARK 300 A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 VAL B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CD CE NZ REMARK 470 ARG A 23 CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 LYS A 72 CE NZ REMARK 470 LYS A 88 CD CE NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 123 CE NZ REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 200 CE NZ REMARK 470 LYS B 18 CE NZ REMARK 470 ARG B 23 NE CZ NH1 NH2 REMARK 470 LYS B 37 CE NZ REMARK 470 LYS B 45 CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 72 CE NZ REMARK 470 ARG B 74 NE CZ NH1 NH2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 65 OD1 ASN A 68 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 72 -70.40 -68.22 REMARK 500 ARG A 74 -93.72 -40.55 REMARK 500 HIS A 96 65.05 -119.45 REMARK 500 ASP A 110 135.18 -36.52 REMARK 500 ASP A 144 -15.65 83.99 REMARK 500 ASP B 144 -4.94 77.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282897 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE: REMARK 999 THIS GENE USES AN ALTERNATE INITIATION CODON THAT RESULTS REMARK 999 IN A VALINE AT POSITION 1 WHEN EXPRESSED AS A FUSION DBREF 1ZKG A 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 DBREF 1ZKG B 1 200 UNP Q9X0C0 Q9X0C0_THEMA 1 200 SEQADV 1ZKG MSE A -11 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG GLY A -10 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG SER A -9 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG ASP A -8 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG LYS A -7 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG ILE A -6 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A -5 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A -4 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A -3 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A -2 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS A 0 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG VAL A 1 UNP Q9X0C0 MET 1 SEE REMARK 999 SEQADV 1ZKG MSE A 56 UNP Q9X0C0 MET 56 MODIFIED RESIDUE SEQADV 1ZKG MSE A 71 UNP Q9X0C0 MET 71 MODIFIED RESIDUE SEQADV 1ZKG MSE A 82 UNP Q9X0C0 MET 82 MODIFIED RESIDUE SEQADV 1ZKG MSE A 155 UNP Q9X0C0 MET 155 MODIFIED RESIDUE SEQADV 1ZKG MSE A 180 UNP Q9X0C0 MET 180 MODIFIED RESIDUE SEQADV 1ZKG MSE A 190 UNP Q9X0C0 MET 190 MODIFIED RESIDUE SEQADV 1ZKG MSE A 198 UNP Q9X0C0 MET 198 MODIFIED RESIDUE SEQADV 1ZKG MSE B -11 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG GLY B -10 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG SER B -9 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG ASP B -8 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG LYS B -7 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG ILE B -6 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B -5 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B -4 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B -3 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B -2 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B -1 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG HIS B 0 UNP Q9X0C0 EXPRESSION TAG SEQADV 1ZKG VAL B 1 UNP Q9X0C0 MET 1 SEE REMARK 999 SEQADV 1ZKG MSE B 56 UNP Q9X0C0 MET 56 MODIFIED RESIDUE SEQADV 1ZKG MSE B 71 UNP Q9X0C0 MET 71 MODIFIED RESIDUE SEQADV 1ZKG MSE B 82 UNP Q9X0C0 MET 82 MODIFIED RESIDUE SEQADV 1ZKG MSE B 155 UNP Q9X0C0 MET 155 MODIFIED RESIDUE SEQADV 1ZKG MSE B 180 UNP Q9X0C0 MET 180 MODIFIED RESIDUE SEQADV 1ZKG MSE B 190 UNP Q9X0C0 MET 190 MODIFIED RESIDUE SEQADV 1ZKG MSE B 198 UNP Q9X0C0 MET 198 MODIFIED RESIDUE SEQRES 1 A 212 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 212 LEU SER LYS ARG ASP ALA ILE LEU LYS ALA ALA VAL GLU SEQRES 3 A 212 VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA THR THR ASP SEQRES 4 A 212 GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS GLY LEU ILE SEQRES 5 A 212 PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU TYR TYR GLN SEQRES 6 A 212 ALA TYR MSE SER VAL THR GLU LYS LEU GLN LYS GLU PHE SEQRES 7 A 212 GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG ASP ILE PHE SEQRES 8 A 212 ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS LEU GLU TYR SEQRES 9 A 212 SER ALA SER HIS PRO GLU GLU ALA ASP PHE LEU ILE THR SEQRES 10 A 212 LEU VAL SER VAL ASP GLU GLY LEU ARG LYS ARG ILE LEU SEQRES 11 A 212 LEU ASP LEU GLU LYS SER GLN ARG VAL PHE PHE ASP PHE SEQRES 12 A 212 VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU ALA GLU ASP SEQRES 13 A 212 VAL THR GLU GLU ILE ALA LEU LYS PHE LEU MSE TRP PHE SEQRES 14 A 212 PHE SER GLY PHE GLU GLU VAL TYR LEU ARG THR TYR GLN SEQRES 15 A 212 GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE ASN THR LEU SEQRES 16 A 212 VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE LEU LYS LYS SEQRES 17 A 212 GLY MSE THR LYS SEQRES 1 B 212 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 B 212 LEU SER LYS ARG ASP ALA ILE LEU LYS ALA ALA VAL GLU SEQRES 3 B 212 VAL PHE GLY LYS LYS GLY TYR ASP ARG ALA THR THR ASP SEQRES 4 B 212 GLU ILE ALA GLU LYS ALA GLY VAL ALA LYS GLY LEU ILE SEQRES 5 B 212 PHE HIS TYR PHE LYS ASN LYS GLU GLU LEU TYR TYR GLN SEQRES 6 B 212 ALA TYR MSE SER VAL THR GLU LYS LEU GLN LYS GLU PHE SEQRES 7 B 212 GLU ASN PHE LEU MSE LYS ASN ARG ASN ARG ASP ILE PHE SEQRES 8 B 212 ASP PHE MSE GLU ARG TRP ILE GLU LYS LYS LEU GLU TYR SEQRES 9 B 212 SER ALA SER HIS PRO GLU GLU ALA ASP PHE LEU ILE THR SEQRES 10 B 212 LEU VAL SER VAL ASP GLU GLY LEU ARG LYS ARG ILE LEU SEQRES 11 B 212 LEU ASP LEU GLU LYS SER GLN ARG VAL PHE PHE ASP PHE SEQRES 12 B 212 VAL ARG GLU LYS LEU LYS ASP LEU ASP LEU ALA GLU ASP SEQRES 13 B 212 VAL THR GLU GLU ILE ALA LEU LYS PHE LEU MSE TRP PHE SEQRES 14 B 212 PHE SER GLY PHE GLU GLU VAL TYR LEU ARG THR TYR GLN SEQRES 15 B 212 GLY LYS PRO GLU LEU LEU LYS ARG ASP MSE ASN THR LEU SEQRES 16 B 212 VAL GLU GLU VAL LYS VAL MSE LEU ARG ILE LEU LYS LYS SEQRES 17 B 212 GLY MSE THR LYS MODRES 1ZKG MSE A 56 MET SELENOMETHIONINE MODRES 1ZKG MSE A 71 MET SELENOMETHIONINE MODRES 1ZKG MSE A 82 MET SELENOMETHIONINE MODRES 1ZKG MSE A 155 MET SELENOMETHIONINE MODRES 1ZKG MSE A 180 MET SELENOMETHIONINE MODRES 1ZKG MSE A 190 MET SELENOMETHIONINE MODRES 1ZKG MSE A 198 MET SELENOMETHIONINE MODRES 1ZKG MSE B 56 MET SELENOMETHIONINE MODRES 1ZKG MSE B 71 MET SELENOMETHIONINE MODRES 1ZKG MSE B 82 MET SELENOMETHIONINE MODRES 1ZKG MSE B 155 MET SELENOMETHIONINE MODRES 1ZKG MSE B 180 MET SELENOMETHIONINE MODRES 1ZKG MSE B 190 MET SELENOMETHIONINE MODRES 1ZKG MSE B 198 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 71 8 HET MSE A 82 8 HET MSE A 155 8 HET MSE A 180 8 HET MSE A 190 8 HET MSE A 198 8 HET MSE B 56 8 HET MSE B 71 8 HET MSE B 82 8 HET MSE B 155 8 HET MSE B 180 8 HET MSE B 190 8 HET MSE B 198 8 HET UNL A 300 10 HET UNL B 300 9 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 5 HOH *56(H2 O) HELIX 1 1 SER A 3 ALA A 24 1 22 HELIX 2 2 THR A 25 GLY A 34 1 10 HELIX 3 3 ALA A 36 PHE A 44 1 9 HELIX 4 4 ASN A 46 ASN A 73 1 28 HELIX 5 5 ASP A 77 HIS A 96 1 20 HELIX 6 6 HIS A 96 ILE A 104 1 9 HELIX 7 7 THR A 105 VAL A 109 5 5 HELIX 8 8 ASP A 110 GLN A 125 1 16 HELIX 9 9 GLN A 125 LEU A 136 1 12 HELIX 10 10 LYS A 137 LEU A 139 5 3 HELIX 11 11 THR A 146 GLN A 170 1 25 HELIX 12 12 LYS A 172 THR A 199 1 28 HELIX 13 13 SER B 3 ALA B 24 1 22 HELIX 14 14 THR B 25 GLY B 34 1 10 HELIX 15 15 ALA B 36 PHE B 44 1 9 HELIX 16 16 ASN B 46 ARG B 74 1 29 HELIX 17 17 ASP B 77 HIS B 96 1 20 HELIX 18 18 HIS B 96 ILE B 104 1 9 HELIX 19 19 THR B 105 VAL B 107 5 3 HELIX 20 20 ASP B 110 LYS B 137 1 28 HELIX 21 21 THR B 146 GLN B 170 1 25 HELIX 22 22 LYS B 172 THR B 199 1 28 LINK C TYR A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N SER A 57 1555 1555 1.33 LINK C LEU A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N LYS A 72 1555 1555 1.33 LINK C PHE A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLU A 83 1555 1555 1.33 LINK C LEU A 154 N MSE A 155 1555 1555 1.34 LINK C MSE A 155 N TRP A 156 1555 1555 1.33 LINK C ASP A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N ASN A 181 1555 1555 1.33 LINK C VAL A 189 N MSE A 190 1555 1555 1.32 LINK C MSE A 190 N LEU A 191 1555 1555 1.33 LINK C GLY A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N THR A 199 1555 1555 1.34 LINK C TYR B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N SER B 57 1555 1555 1.32 LINK C LEU B 70 N MSE B 71 1555 1555 1.33 LINK C MSE B 71 N LYS B 72 1555 1555 1.32 LINK C PHE B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N GLU B 83 1555 1555 1.32 LINK C LEU B 154 N MSE B 155 1555 1555 1.32 LINK C MSE B 155 N TRP B 156 1555 1555 1.33 LINK C ASP B 179 N MSE B 180 1555 1555 1.33 LINK C MSE B 180 N ASN B 181 1555 1555 1.33 LINK C VAL B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N LEU B 191 1555 1555 1.31 LINK C GLY B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N THR B 199 1555 1555 1.33 SITE 1 AC1 5 TRP A 85 ILE A 86 LYS A 89 GLN A 125 SITE 2 AC1 5 GLU A 162 SITE 1 AC2 5 PHE B 66 LYS B 89 SER B 124 VAL B 127 SITE 2 AC2 5 PHE B 161 CRYST1 50.518 87.109 59.156 90.00 110.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019800 0.000000 0.007490 0.00000 SCALE2 0.000000 0.011480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018080 0.00000