PDB Short entry for 1ZPG HEADER HYDROLASE 16-MAY-05 1ZPG TITLE ARGINASE I COVALENTLY MODIFIED WITH PROPYLAMINE AT Q19C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET C KEYWDS CHEMICALLY MODIFIED ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.M.COLLELUORI,R.S.RECZKOWSKI,F.A.EMIG,E.CAMA,J.D.COX,L.R.SCOLNICK, AUTHOR 2 K.COMPHER,K.JUDE,S.HAN,R.E.VIOLA,D.W.CHRISTIANSON,D.E.ASH REVDAT 4 20-OCT-21 1ZPG 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1ZPG 1 VERSN REVDAT 2 24-FEB-09 1ZPG 1 VERSN REVDAT 1 06-DEC-05 1ZPG 0 JRNL AUTH D.M.COLLELUORI,R.S.RECZKOWSKI,F.A.EMIG,E.CAMA,J.D.COX, JRNL AUTH 2 L.R.SCOLNICK,K.COMPHER,K.JUDE,S.HAN,R.E.VIOLA, JRNL AUTH 3 D.W.CHRISTIANSON,D.E.ASH JRNL TITL PROBING THE ROLE OF THE HYPER-REACTIVE HISTIDINE RESIDUE OF JRNL TITL 2 ARGINASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 444 15 2005 JRNL REFN ISSN 0003-9861 JRNL PMID 16266687 JRNL DOI 10.1016/J.ABB.2005.09.009 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1943874.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 72508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3708 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11218 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 639 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 2.99000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.680 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 61.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : MM19_PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CISPEP2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : MM19_PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CISPEP.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .9124 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE, PEG 8000, MNCL2, PH 8.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.10133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.55067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 -118.79 59.14 REMARK 500 PRO A 167 111.31 -37.61 REMARK 500 ARG A 180 3.09 -162.18 REMARK 500 PRO B 14 81.85 -69.09 REMARK 500 GLN B 65 -116.29 62.14 REMARK 500 PRO B 167 119.60 -39.72 REMARK 500 ARG B 180 6.24 -162.49 REMARK 500 PRO C 14 86.00 -68.37 REMARK 500 GLN C 65 -114.92 56.55 REMARK 500 ARG C 180 2.78 -160.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 98 GLY A 99 89.81 REMARK 500 GLY B 98 GLY B 99 89.82 REMARK 500 GLY C 98 GLY C 99 89.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 ASP A 124 OD2 93.1 REMARK 620 3 ASP A 128 OD2 91.9 92.0 REMARK 620 4 ASP A 232 OD2 101.6 85.1 166.3 REMARK 620 5 HOH A 542 O 165.2 101.0 82.9 84.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 126 ND1 90.6 REMARK 620 3 ASP A 232 OD2 86.6 169.8 REMARK 620 4 ASP A 234 OD1 77.3 99.3 89.7 REMARK 620 5 ASP A 234 OD2 134.4 98.7 90.2 57.2 REMARK 620 6 HOH A 542 O 95.8 92.5 78.1 166.3 127.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 124 OD2 94.9 REMARK 620 3 ASP B 128 OD2 92.2 96.2 REMARK 620 4 ASP B 232 OD2 102.6 82.7 165.2 REMARK 620 5 HOH B 547 O 164.0 101.1 85.3 80.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 89.9 REMARK 620 3 ASP B 232 OD2 90.4 172.9 REMARK 620 4 ASP B 234 OD2 135.2 95.1 89.7 REMARK 620 5 ASP B 234 OD1 79.1 98.5 88.6 56.1 REMARK 620 6 HOH B 547 O 101.1 93.1 79.8 122.9 168.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 506 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 ND1 REMARK 620 2 ASP C 124 OD2 92.5 REMARK 620 3 ASP C 128 OD2 93.6 89.4 REMARK 620 4 ASP C 232 OD2 103.1 86.7 163.0 REMARK 620 5 HOH C 550 O 164.2 103.1 84.4 80.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 HIS C 126 ND1 93.3 REMARK 620 3 ASP C 232 OD2 88.6 172.5 REMARK 620 4 ASP C 234 OD1 80.5 101.0 86.5 REMARK 620 5 ASP C 234 OD2 136.2 96.8 86.8 55.7 REMARK 620 6 HOH C 550 O 100.2 90.0 82.6 169.0 122.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZPE RELATED DB: PDB REMARK 900 ARGINASE I COVALENTLY MODIFIED WITH BUTYLAMINE AT Q19C REMARK 900 RELATED ID: 1TBJ RELATED DB: PDB REMARK 900 H141A ARGINASE I REMARK 900 RELATED ID: 1TA1 RELATED DB: PDB REMARK 900 H141C ARGINASE I REMARK 900 RELATED ID: 1TBH RELATED DB: PDB REMARK 900 H141D ARGINASE I REMARK 900 RELATED ID: 1TBL RELATED DB: PDB REMARK 900 H141N ARGINASE I DBREF 1ZPG A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1ZPG B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1ZPG C 6 319 UNP P07824 ARGI1_RAT 6 319 SEQADV 1ZPG BPE A 19 UNP P07824 GLN 19 MODIFIED RESIDUE SEQADV 1ZPG ALA A 119 UNP P07824 CYS 119 ENGINEERED MUTATION SEQADV 1ZPG ALA A 141 UNP P07824 HIS 141 ENGINEERED MUTATION SEQADV 1ZPG ALA A 168 UNP P07824 CYS 168 ENGINEERED MUTATION SEQADV 1ZPG ALA A 303 UNP P07824 CYS 303 ENGINEERED MUTATION SEQADV 1ZPG BPE B 19 UNP P07824 GLN 19 MODIFIED RESIDUE SEQADV 1ZPG ALA B 119 UNP P07824 CYS 119 ENGINEERED MUTATION SEQADV 1ZPG ALA B 141 UNP P07824 HIS 141 ENGINEERED MUTATION SEQADV 1ZPG ALA B 168 UNP P07824 CYS 168 ENGINEERED MUTATION SEQADV 1ZPG ALA B 303 UNP P07824 CYS 303 ENGINEERED MUTATION SEQADV 1ZPG BPE C 19 UNP P07824 GLN 19 MODIFIED RESIDUE SEQADV 1ZPG ALA C 119 UNP P07824 CYS 119 ENGINEERED MUTATION SEQADV 1ZPG ALA C 141 UNP P07824 HIS 141 ENGINEERED MUTATION SEQADV 1ZPG ALA C 168 UNP P07824 CYS 168 ENGINEERED MUTATION SEQADV 1ZPG ALA C 303 UNP P07824 CYS 303 ENGINEERED MUTATION SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 BPE PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU ALA VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU ALA GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO ALA ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER ALA PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 BPE PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU ALA VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU ALA GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO ALA ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER ALA PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 BPE PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU ALA VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU ALA GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO ALA ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER ALA PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU MODRES 1ZPG BPE A 19 CYS MODRES 1ZPG BPE B 19 CYS MODRES 1ZPG BPE C 19 CYS HET BPE A 19 10 HET BPE B 19 10 HET BPE C 19 10 HET MN A 501 1 HET MN A 502 1 HET MN B 503 1 HET MN B 504 1 HET MN C 505 1 HET MN C 506 1 HETNAM BPE (2S)-2-AMINO-3-[(3-AMINOPROPYL)SULFANYL]PROPAN-1-OL HETNAM MN MANGANESE (II) ION HETSYN BPE S-PROPYLAMINE-L-CYSTEINE FORMUL 1 BPE 3(C6 H16 N2 O S) FORMUL 4 MN 6(MN 2+) FORMUL 10 HOH *403(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 LYS A 41 1 7 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 SER A 170 LYS A 172 5 3 HELIX 11 11 ASP A 183 LEU A 193 1 11 HELIX 12 12 MET A 200 GLY A 207 1 8 HELIX 13 13 GLY A 207 GLY A 221 1 15 HELIX 14 14 ASP A 234 LEU A 236 5 3 HELIX 15 15 SER A 253 GLY A 268 1 16 HELIX 16 16 ASN A 279 GLY A 283 5 5 HELIX 17 17 THR A 285 PHE A 304 1 20 HELIX 18 18 GLY B 23 GLU B 25 5 3 HELIX 19 19 LYS B 26 ALA B 34 1 9 HELIX 20 20 GLY B 35 GLU B 42 1 8 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 ASP B 100 SER B 102 5 3 HELIX 23 23 MET B 103 ARG B 113 1 11 HELIX 24 24 ASN B 139 GLY B 142 5 4 HELIX 25 25 GLN B 143 LEU B 149 1 7 HELIX 26 26 LYS B 150 LYS B 153 5 4 HELIX 27 27 SER B 170 LYS B 172 5 3 HELIX 28 28 ASP B 183 LEU B 193 1 11 HELIX 29 29 SER B 199 GLY B 221 1 23 HELIX 30 30 ASP B 234 LEU B 236 5 3 HELIX 31 31 SER B 253 GLY B 268 1 16 HELIX 32 32 THR B 285 PHE B 304 1 20 HELIX 33 33 GLY C 23 GLU C 25 5 3 HELIX 34 34 LYS C 26 ALA C 34 1 9 HELIX 35 35 GLY C 35 LYS C 41 1 7 HELIX 36 36 ASN C 69 ASN C 90 1 22 HELIX 37 37 ASP C 100 SER C 102 5 3 HELIX 38 38 MET C 103 HIS C 115 1 13 HELIX 39 39 ASN C 139 GLY C 142 5 4 HELIX 40 40 GLN C 143 LEU C 149 1 7 HELIX 41 41 LYS C 150 LYS C 153 5 4 HELIX 42 42 SER C 170 LYS C 172 5 3 HELIX 43 43 ASP C 183 LEU C 193 1 11 HELIX 44 44 SER C 199 GLY C 221 1 23 HELIX 45 45 ASP C 234 LEU C 236 5 3 HELIX 46 46 SER C 253 GLY C 268 1 16 HELIX 47 47 THR C 285 PHE C 304 1 20 SHEET 1 A 8 VAL A 47 ASP A 52 0 SHEET 2 A 8 ILE A 8 ALA A 13 1 N ILE A 10 O HIS A 50 SHEET 3 A 8 ILE A 93 GLY A 98 1 O VAL A 95 N ILE A 11 SHEET 4 A 8 LEU A 270 MET A 276 1 O ILE A 275 N GLY A 98 SHEET 5 A 8 ILE A 227 ASP A 232 1 N ILE A 227 O SER A 271 SHEET 6 A 8 ALA A 119 VAL A 123 1 N ALA A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 LEU A 179 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O PHE A 198 N GLY A 178 SHEET 1 B 8 VAL B 47 ASP B 52 0 SHEET 2 B 8 ILE B 8 ALA B 13 1 N ILE B 10 O ARG B 48 SHEET 3 B 8 ILE B 93 GLY B 98 1 O VAL B 95 N ILE B 11 SHEET 4 B 8 LEU B 270 MET B 276 1 O ILE B 275 N GLY B 98 SHEET 5 B 8 ILE B 227 ASP B 232 1 N PHE B 231 O MET B 276 SHEET 6 B 8 ALA B 119 VAL B 123 1 N ALA B 119 O HIS B 228 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O PHE B 198 N TYR B 176 SHEET 1 C 8 ASN C 46 ASP C 52 0 SHEET 2 C 8 PRO C 7 ALA C 13 1 N ILE C 8 O ASN C 46 SHEET 3 C 8 ILE C 93 GLY C 98 1 O VAL C 95 N ILE C 11 SHEET 4 C 8 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 8 ILE C 227 ASP C 232 1 N ILE C 227 O SER C 271 SHEET 6 C 8 ALA C 119 VAL C 123 1 N ALA C 119 O HIS C 228 SHEET 7 C 8 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 PHE C 198 1 O PHE C 198 N TYR C 176 LINK C GLY A 18 N BPE A 19 1555 1555 1.33 LINK C BPE A 19 N PRO A 20 1555 1555 1.35 LINK C GLY B 18 N BPE B 19 1555 1555 1.33 LINK C BPE B 19 N PRO B 20 1555 1555 1.34 LINK C GLY C 18 N BPE C 19 1555 1555 1.33 LINK C BPE C 19 N PRO C 20 1555 1555 1.34 LINK ND1 HIS A 101 MN MN A 502 1555 1555 2.19 LINK OD1 ASP A 124 MN MN A 501 1555 1555 2.16 LINK OD2 ASP A 124 MN MN A 502 1555 1555 2.07 LINK ND1 HIS A 126 MN MN A 501 1555 1555 2.28 LINK OD2 ASP A 128 MN MN A 502 1555 1555 2.13 LINK OD2 ASP A 232 MN MN A 501 1555 1555 2.34 LINK OD2 ASP A 232 MN MN A 502 1555 1555 2.14 LINK OD1 ASP A 234 MN MN A 501 1555 1555 2.39 LINK OD2 ASP A 234 MN MN A 501 1555 1555 2.15 LINK MN MN A 501 O HOH A 542 1555 1555 2.22 LINK MN MN A 502 O HOH A 542 1555 1555 2.13 LINK ND1 HIS B 101 MN MN B 504 1555 1555 2.13 LINK OD1 ASP B 124 MN MN B 503 1555 1555 2.19 LINK OD2 ASP B 124 MN MN B 504 1555 1555 2.14 LINK ND1 HIS B 126 MN MN B 503 1555 1555 2.24 LINK OD2 ASP B 128 MN MN B 504 1555 1555 2.13 LINK OD2 ASP B 232 MN MN B 503 1555 1555 2.29 LINK OD2 ASP B 232 MN MN B 504 1555 1555 2.24 LINK OD2 ASP B 234 MN MN B 503 1555 1555 2.28 LINK OD1 ASP B 234 MN MN B 503 1555 1555 2.37 LINK MN MN B 503 O HOH B 547 1555 1555 2.16 LINK MN MN B 504 O HOH B 547 1555 1555 2.18 LINK ND1 HIS C 101 MN MN C 506 1555 1555 2.22 LINK OD1 ASP C 124 MN MN C 505 1555 1555 2.16 LINK OD2 ASP C 124 MN MN C 506 1555 1555 2.15 LINK ND1 HIS C 126 MN MN C 505 1555 1555 2.29 LINK OD2 ASP C 128 MN MN C 506 1555 1555 2.09 LINK OD2 ASP C 232 MN MN C 505 1555 1555 2.26 LINK OD2 ASP C 232 MN MN C 506 1555 1555 2.26 LINK OD1 ASP C 234 MN MN C 505 1555 1555 2.41 LINK OD2 ASP C 234 MN MN C 505 1555 1555 2.28 LINK MN MN C 505 O HOH C 550 1555 1555 2.16 LINK MN MN C 506 O HOH C 550 1555 1555 2.26 SITE 1 AC1 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC1 6 MN A 502 HOH A 542 SITE 1 AC2 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC2 6 MN A 501 HOH A 542 SITE 1 AC3 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC3 6 MN B 504 HOH B 547 SITE 1 AC4 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC4 6 MN B 503 HOH B 547 SITE 1 AC5 6 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC5 6 MN C 506 HOH C 550 SITE 1 AC6 6 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC6 6 MN C 505 HOH C 550 CRYST1 88.184 88.184 106.652 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011340 0.006547 0.000000 0.00000 SCALE2 0.000000 0.013094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009376 0.00000