PDB Short entry for 1ZSG HEADER TRANSFERASE 24-MAY-05 1ZSG TITLE BETA PIX-SH3 COMPLEXED WITH AN ATYPICAL PEPTIDE FROM ALPHA-PAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 179-243; COMPND 5 SYNONYM: PAK-INTERACTING EXCHANGE FACTOR BETA, BETA-PIX, COOL-1, P85, COMPND 6 PIX-SH3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SEQUENCE DATABASE RESIDUES 183-204; COMPND 12 SYNONYM: P21-ACTIVATED KINASE 1, PAK-1, P65-PAK, ALPHA-PAK, PAK COMPND 13 PEPTIDE; COMPND 14 EC: 2.7.1.37; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF7, COOL1, KIAA0142, P85SPR, PAK3BP, PIXB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET16B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 13 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS SH3-PEPTIDE COMPLEX, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.R.MOTT,D.NIETLISPACH,K.A.EVETTS,D.OWEN REVDAT 3 02-MAR-22 1ZSG 1 REMARK REVDAT 2 24-FEB-09 1ZSG 1 VERSN REVDAT 1 30-AUG-05 1ZSG 0 JRNL AUTH H.R.MOTT,D.NIETLISPACH,K.A.EVETTS,D.OWEN JRNL TITL STRUCTURAL ANALYSIS OF THE SH3 DOMAIN OF BETA-PIX AND ITS JRNL TITL 2 INTERACTION WITH ALPHA-P21 ACTIVATED KINASE (PAK) JRNL REF BIOCHEMISTRY V. 44 10977 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16101281 JRNL DOI 10.1021/BI050374A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOTAL OF 1788 UNAMBIGUOUS AND 761 REMARK 3 AMBIGUOUS NOE DERIEVED DISTANCE RESTRAINTS, 33 DIHEDRAL ANGLE REMARK 3 RESTRAINTS. REMARK 4 REMARK 4 1ZSG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000033063. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.3; 7.3 REMARK 210 IONIC STRENGTH : 100 MM NA2SO4; 100 MM NA2SO4 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM 15N LABELLED PIX-SH3 REMARK 210 COMPLEXED WITH 1.2 MM PEPTIDE IN REMARK 210 20 MM NA2HPO4/NAH2PO4, PH 7.3, REMARK 210 100MM NA2SO4, 0.05% NAN3, 90% REMARK 210 H2O, 10% D2O; 1MM 15N,13C REMARK 210 LABELLED PIX-SH3 COMPLEXED WITH REMARK 210 1.2 MM PEPTIDE IN 20 MM NA2HPO4/ REMARK 210 NAH2PO4, PH 7.3, 100MM NA2SO4, REMARK 210 0.05% NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 13C,15N- REMARK 210 FILTERED, 13C-SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA 2.7, ANSIG 3.3, ARIA 1.2, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : SIMLUATED ANNEALING WITH TORSION REMARK 210 ANGLE DYNAMICS FOLLOWED BY REMARK 210 CARTESIAN DYNAMICS COOLING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 123.93 65.34 REMARK 500 1 LYS A 14 -67.59 -97.65 REMARK 500 1 LYS A 29 100.73 -45.18 REMARK 500 1 ILE B 190 142.74 64.70 REMARK 500 1 PRO B 194 -172.70 -68.35 REMARK 500 1 THR B 197 -79.98 63.23 REMARK 500 1 LYS B 198 -165.48 -69.09 REMARK 500 1 SER B 199 112.46 57.51 REMARK 500 1 THR B 202 132.56 67.24 REMARK 500 2 SER A 5 -9.30 -155.64 REMARK 500 2 ASN A 7 14.34 -149.00 REMARK 500 2 GLU A 24 -153.70 -97.21 REMARK 500 2 LYS A 29 104.27 -43.48 REMARK 500 2 ASN A 49 108.05 -54.76 REMARK 500 2 LYS A 64 110.62 62.58 REMARK 500 2 ILE B 190 153.87 63.52 REMARK 500 2 ARG B 193 100.61 -164.84 REMARK 500 2 LYS B 198 -85.29 61.92 REMARK 500 2 SER B 199 96.79 -169.94 REMARK 500 2 VAL B 200 -154.08 -142.88 REMARK 500 2 TYR B 201 -164.10 -69.53 REMARK 500 3 LYS A 14 -61.70 -98.42 REMARK 500 3 LYS A 29 99.40 -44.54 REMARK 500 3 GLU A 39 -151.74 -98.58 REMARK 500 3 ASN A 49 106.56 -55.36 REMARK 500 3 VAL B 189 -157.15 -114.87 REMARK 500 3 PRO B 194 -74.81 -86.43 REMARK 500 3 GLU B 195 -31.27 -150.45 REMARK 500 3 THR B 197 105.82 62.97 REMARK 500 3 TYR B 201 102.34 60.59 REMARK 500 3 THR B 202 -172.61 53.48 REMARK 500 4 ASP A 3 24.94 -159.52 REMARK 500 4 ASN A 4 -17.88 -153.50 REMARK 500 4 SER A 5 -82.94 61.51 REMARK 500 4 ASN A 6 171.39 61.96 REMARK 500 4 LYS A 14 -65.76 -96.44 REMARK 500 4 LYS A 29 104.45 -43.38 REMARK 500 4 ASN A 49 101.18 -52.58 REMARK 500 4 LYS A 64 89.07 59.91 REMARK 500 4 ILE B 190 139.21 63.51 REMARK 500 4 PRO B 194 -166.00 -71.80 REMARK 500 4 HIS B 196 -176.91 61.15 REMARK 500 4 THR B 197 -84.75 61.61 REMARK 500 4 LYS B 198 -87.40 58.08 REMARK 500 4 VAL B 200 -151.85 -101.03 REMARK 500 5 SER A 5 -159.74 51.10 REMARK 500 5 ASN A 7 84.33 -150.99 REMARK 500 5 LYS A 29 98.58 -45.45 REMARK 500 5 ASN A 49 108.27 -52.39 REMARK 500 5 ILE B 190 143.29 64.45 REMARK 500 REMARK 500 THIS ENTRY HAS 311 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZSG A 1 65 UNP Q14155 ARHG7_HUMAN 179 243 DBREF 1ZSG B 183 204 UNP Q13153 PAK1_HUMAN 183 204 SEQRES 1 A 65 MET THR ASP ASN SER ASN ASN GLN LEU VAL VAL ARG ALA SEQRES 2 A 65 LYS PHE ASN PHE GLN GLN THR ASN GLU ASP GLU LEU SER SEQRES 3 A 65 PHE SER LYS GLY ASP VAL ILE HIS VAL THR ARG VAL GLU SEQRES 4 A 65 GLU GLY GLY TRP TRP GLU GLY THR LEU ASN GLY ARG THR SEQRES 5 A 65 GLY TRP PHE PRO SER ASN TYR VAL ARG GLU VAL LYS ALA SEQRES 1 B 22 ASP ALA THR PRO PRO PRO VAL ILE ALA PRO ARG PRO GLU SEQRES 2 B 22 HIS THR LYS SER VAL TYR THR ARG SER SHEET 1 A 5 ARG A 51 PRO A 56 0 SHEET 2 A 5 TRP A 43 LEU A 48 -1 N TRP A 44 O PHE A 55 SHEET 3 A 5 VAL A 32 ARG A 37 -1 N THR A 36 O GLU A 45 SHEET 4 A 5 VAL A 10 ALA A 13 -1 N VAL A 11 O ILE A 33 SHEET 5 A 5 VAL A 60 GLU A 62 -1 O ARG A 61 N ARG A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000