PDB Short entry for 1ZZJ HEADER STRUCTURAL PROTEIN/DNA 14-JUN-05 1ZZJ TITLE STRUCTURE OF THE THIRD KH DOMAIN OF HNRNP K IN COMPLEX WITH 15-MER TITLE 2 SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*CP*CP*CP*CP*TP*CP*CP*CP*CP*AP*TP*TP*T)-3'; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K; COMPND 7 CHAIN: A, B, C; COMPND 8 FRAGMENT: KH3 DOMAIN; COMPND 9 SYNONYM: HNRNP K, TRANSFORMATION UP-REGULATED NUCLEAR PROTEIN, TUNP; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PROTEIN-DNA COMPLEX, STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.H.BACKE,A.C.MESSIAS,R.B.RAVELLI,M.SATTLER,S.CUSACK REVDAT 4 13-MAR-24 1ZZJ 1 SEQADV REVDAT 3 13-JUL-11 1ZZJ 1 VERSN REVDAT 2 24-FEB-09 1ZZJ 1 VERSN REVDAT 1 09-AUG-05 1ZZJ 0 JRNL AUTH P.H.BACKE,A.C.MESSIAS,R.B.RAVELLI,M.SATTLER,S.CUSACK JRNL TITL X-RAY CRYSTALLOGRAPHIC AND NMR STUDIES OF THE THIRD KH JRNL TITL 2 DOMAIN OF HNRNP K IN COMPLEX WITH SINGLE-STRANDED NUCLEIC JRNL TITL 3 ACIDS JRNL REF STRUCTURE V. 13 1055 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16004877 JRNL DOI 10.1016/J.STR.2005.04.008 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 10975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1622 REMARK 3 NUCLEIC ACID ATOMS : 153 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -3.48000 REMARK 3 B12 (A**2) : 1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.358 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.684 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1805 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2472 ; 2.058 ; 2.080 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 8.193 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;40.262 ;26.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;20.347 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1278 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 765 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1250 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 0.828 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1766 ; 1.427 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 763 ; 2.554 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 706 ; 3.847 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 11 A 27 2 REMARK 3 1 B 11 B 27 2 REMARK 3 1 C 11 C 27 2 REMARK 3 2 A 28 A 35 5 REMARK 3 2 B 28 B 35 5 REMARK 3 2 C 28 C 35 5 REMARK 3 3 A 36 A 50 2 REMARK 3 3 B 36 B 50 2 REMARK 3 3 C 36 C 50 2 REMARK 3 4 A 51 A 57 5 REMARK 3 4 B 51 B 57 5 REMARK 3 4 C 51 C 57 5 REMARK 3 5 A 58 A 81 2 REMARK 3 5 B 58 B 81 2 REMARK 3 5 C 58 C 81 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 224 ; 0.09 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 224 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 224 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 253 ; 0.54 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 253 ; 0.59 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 253 ; 0.61 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 31 ; 0.84 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 31 ; 0.60 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 31 ; 0.61 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 224 ; 0.23 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 224 ; 0.21 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 224 ; 0.21 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 253 ; 1.12 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 253 ; 0.96 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 253 ; 1.17 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 31 ; 1.62 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 31 ; 1.93 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 31 ; 1.71 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 83 REMARK 3 RESIDUE RANGE : D 2 D 5 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5614 15.8067 33.0611 REMARK 3 T TENSOR REMARK 3 T11: -0.2405 T22: -0.3777 REMARK 3 T33: -0.2364 T12: 0.0016 REMARK 3 T13: 0.0069 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 4.3119 L22: 11.6752 REMARK 3 L33: 11.6250 L12: -2.5990 REMARK 3 L13: 1.5902 L23: -4.5916 REMARK 3 S TENSOR REMARK 3 S11: 0.2315 S12: 0.1812 S13: 0.1735 REMARK 3 S21: -0.3220 S22: -0.0931 S23: 0.7472 REMARK 3 S31: -0.3903 S32: -0.2679 S33: -0.1384 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 81 REMARK 3 RESIDUE RANGE : D 6 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2935 34.4308 49.8141 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: -0.3937 REMARK 3 T33: -0.1251 T12: -0.0024 REMARK 3 T13: -0.2175 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.6351 L22: 12.3198 REMARK 3 L33: 15.0734 L12: 0.0123 REMARK 3 L13: 0.8339 L23: 9.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.6705 S12: 0.0501 S13: -0.5452 REMARK 3 S21: 1.3061 S22: 0.1390 S23: -0.8673 REMARK 3 S31: 2.0037 S32: -0.0912 S33: -0.8095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 81 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2737 -6.5910 32.5379 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: -0.1872 REMARK 3 T33: -0.1425 T12: 0.2762 REMARK 3 T13: -0.0883 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 4.1427 L22: 7.8950 REMARK 3 L33: 13.8179 L12: 2.7806 REMARK 3 L13: 1.2901 L23: -1.6999 REMARK 3 S TENSOR REMARK 3 S11: 0.6876 S12: -0.1777 S13: -0.8130 REMARK 3 S21: 0.0621 S22: -0.1645 S23: -0.0462 REMARK 3 S31: 1.3764 S32: 0.5564 S33: -0.5231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.88533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.77067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.77067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.88533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT D 0 REMARK 465 DT D 1 REMARK 465 DC D 10 REMARK 465 DA D 11 REMARK 465 DT D 12 REMARK 465 DT D 13 REMARK 465 DT D 14 REMARK 465 GLY A 8 REMARK 465 TYR A 84 REMARK 465 SER A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 PHE A 88 REMARK 465 PHE A 89 REMARK 465 GLY B 8 REMARK 465 LYS B 82 REMARK 465 GLN B 83 REMARK 465 TYR B 84 REMARK 465 SER B 85 REMARK 465 GLY B 86 REMARK 465 LYS B 87 REMARK 465 PHE B 88 REMARK 465 PHE B 89 REMARK 465 LYS C 82 REMARK 465 GLN C 83 REMARK 465 TYR C 84 REMARK 465 SER C 85 REMARK 465 GLY C 86 REMARK 465 LYS C 87 REMARK 465 PHE C 88 REMARK 465 PHE C 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 LYS B 31 CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 GLU B 54 CB CG CD OE1 OE2 REMARK 470 LYS C 31 CD CE NZ REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 37 CG CD CE NZ REMARK 470 GLU C 51 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 4 O3' DC D 4 C3' -0.050 REMARK 500 GLN C 34 CD GLN C 34 OE1 0.208 REMARK 500 GLN C 34 CD GLN C 34 NE2 0.218 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 7 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 8 N1 - C2 - O2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC D 8 N3 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC D 9 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 PRO A 52 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 52 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO A 52 N - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 ARG B 40 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 -26.39 -2.39 REMARK 500 LEU A 53 -160.38 -53.52 REMARK 500 GLU B 54 106.49 -50.69 REMARK 500 ALA C 9 115.00 125.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 52 LEU A 53 -70.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 31 -10.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZZI RELATED DB: PDB REMARK 900 RELATED ID: 1ZZK RELATED DB: PDB DBREF 1ZZJ A 11 89 UNP P61978 HNRPK_HUMAN 385 463 DBREF 1ZZJ B 11 89 UNP P61978 HNRPK_HUMAN 385 463 DBREF 1ZZJ C 11 89 UNP P61978 HNRPK_HUMAN 385 463 DBREF 1ZZJ D 0 14 PDB 1ZZJ 1ZZJ 0 14 SEQADV 1ZZJ GLY A 8 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ ALA A 9 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ MET A 10 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ GLY B 8 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ ALA B 9 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ MET B 10 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ GLY C 8 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ ALA C 9 UNP P61978 CLONING ARTIFACT SEQADV 1ZZJ MET C 10 UNP P61978 CLONING ARTIFACT SEQRES 1 D 15 DT DT DC DC DC DC DT DC DC DC DC DA DT SEQRES 2 D 15 DT DT SEQRES 1 A 82 GLY ALA MET GLY PRO ILE ILE THR THR GLN VAL THR ILE SEQRES 2 A 82 PRO LYS ASP LEU ALA GLY SER ILE ILE GLY LYS GLY GLY SEQRES 3 A 82 GLN ARG ILE LYS GLN ILE ARG HIS GLU SER GLY ALA SER SEQRES 4 A 82 ILE LYS ILE ASP GLU PRO LEU GLU GLY SER GLU ASP ARG SEQRES 5 A 82 ILE ILE THR ILE THR GLY THR GLN ASP GLN ILE GLN ASN SEQRES 6 A 82 ALA GLN TYR LEU LEU GLN ASN SER VAL LYS GLN TYR SER SEQRES 7 A 82 GLY LYS PHE PHE SEQRES 1 B 82 GLY ALA MET GLY PRO ILE ILE THR THR GLN VAL THR ILE SEQRES 2 B 82 PRO LYS ASP LEU ALA GLY SER ILE ILE GLY LYS GLY GLY SEQRES 3 B 82 GLN ARG ILE LYS GLN ILE ARG HIS GLU SER GLY ALA SER SEQRES 4 B 82 ILE LYS ILE ASP GLU PRO LEU GLU GLY SER GLU ASP ARG SEQRES 5 B 82 ILE ILE THR ILE THR GLY THR GLN ASP GLN ILE GLN ASN SEQRES 6 B 82 ALA GLN TYR LEU LEU GLN ASN SER VAL LYS GLN TYR SER SEQRES 7 B 82 GLY LYS PHE PHE SEQRES 1 C 82 GLY ALA MET GLY PRO ILE ILE THR THR GLN VAL THR ILE SEQRES 2 C 82 PRO LYS ASP LEU ALA GLY SER ILE ILE GLY LYS GLY GLY SEQRES 3 C 82 GLN ARG ILE LYS GLN ILE ARG HIS GLU SER GLY ALA SER SEQRES 4 C 82 ILE LYS ILE ASP GLU PRO LEU GLU GLY SER GLU ASP ARG SEQRES 5 C 82 ILE ILE THR ILE THR GLY THR GLN ASP GLN ILE GLN ASN SEQRES 6 C 82 ALA GLN TYR LEU LEU GLN ASN SER VAL LYS GLN TYR SER SEQRES 7 C 82 GLY LYS PHE PHE FORMUL 5 HOH *80(H2 O) HELIX 1 1 LEU A 24 GLY A 30 1 7 HELIX 2 2 GLY A 33 GLY A 44 1 12 HELIX 3 3 THR A 66 GLN A 83 1 18 HELIX 4 4 LEU B 24 GLY B 30 1 7 HELIX 5 5 GLY B 33 GLY B 44 1 12 HELIX 6 6 THR B 66 VAL B 81 1 16 HELIX 7 7 LEU C 24 GLY C 30 1 7 HELIX 8 8 GLY C 33 GLY C 44 1 12 HELIX 9 9 THR C 66 VAL C 81 1 16 SHEET 1 A 3 ILE A 14 PRO A 21 0 SHEET 2 A 3 ASP A 58 GLY A 65 -1 O ILE A 63 N THR A 16 SHEET 3 A 3 SER A 46 ILE A 49 -1 N SER A 46 O THR A 64 SHEET 1 B 3 ILE B 14 PRO B 21 0 SHEET 2 B 3 ASP B 58 GLY B 65 -1 O ILE B 63 N THR B 16 SHEET 3 B 3 SER B 46 ILE B 49 -1 N SER B 46 O THR B 64 SHEET 1 C 3 ILE C 14 PRO C 21 0 SHEET 2 C 3 ASP C 58 GLY C 65 -1 O ILE C 63 N THR C 16 SHEET 3 C 3 SER C 46 ILE C 49 -1 N LYS C 48 O THR C 62 CRYST1 54.008 54.008 149.656 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018516 0.010690 0.000000 0.00000 SCALE2 0.000000 0.021380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006682 0.00000