PDB Full entry for 248D HEADER DNA/RNA 02-FEB-96 248D TITLE CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES TITLE 2 AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)- COMPND 3 3'), ORTHORHOMBIC; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS A-DNA/RNA, DOUBLE HELIX, BULGES, DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.PORTMANN,S.GRIMM,C.WORKMAN,N.USMAN,M.EGLI REVDAT 5 14-FEB-24 248D 1 REMARK REVDAT 4 16-NOV-11 248D 1 VERSN HETATM REVDAT 3 24-FEB-09 248D 1 VERSN REVDAT 2 01-APR-03 248D 1 JRNL REVDAT 1 08-MAR-96 248D 0 JRNL AUTH S.PORTMANN,S.GRIMM,C.WORKMAN,N.USMAN,M.EGLI JRNL TITL CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE JRNL TITL 2 BULGES AND A CONFORMATIONAL BASIS FOR SITE-SPECIFIC RNA JRNL TITL 3 SELF-CLEAVAGE. JRNL REF CHEM.BIOL. V. 3 173 1996 JRNL REFN ISSN 1074-5521 JRNL PMID 8807843 JRNL DOI 10.1016/S1074-5521(96)90260-4 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 229 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 3.280 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 248D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000177647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.40, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 12.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 16.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 12.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 16.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.78000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 12.94500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 16.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.78000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 12.94500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 16.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 14 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 4 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT A 5 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 5 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT A 5 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT A 7 C5' - C4' - O4' ANGL. DEV. = 8.1 DEGREES REMARK 500 DT A 7 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA A 8 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 C A 9 N1 - C2 - O2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 13 DBREF 248D A 1 11 PDB 248D 248D 1 11 SEQRES 1 A 11 G C G DA DT DA DT DA C G C HET SPM A 12 14 HET SPM A 13 14 HETNAM SPM SPERMINE FORMUL 2 SPM 2(C10 H26 N4) FORMUL 4 HOH *38(H2 O) SITE 1 AC1 5 G A 1 DA A 8 C A 9 G A 10 SITE 2 AC1 5 C A 11 SITE 1 AC2 9 C A 2 G A 3 DT A 5 DA A 6 SITE 2 AC2 9 DT A 7 DA A 8 HOH A 18 HOH A 28 SITE 3 AC2 9 HOH A 31 CRYST1 25.890 33.970 57.560 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017373 0.00000 ATOM 1 O5' G A 1 13.247 3.145 11.199 1.00 15.29 O ATOM 2 C5' G A 1 14.640 3.265 11.534 1.00 14.21 C ATOM 3 C4' G A 1 15.422 1.965 11.719 1.00 11.99 C ATOM 4 O4' G A 1 15.067 1.274 12.923 1.00 11.15 O ATOM 5 C3' G A 1 15.210 0.983 10.558 1.00 12.55 C ATOM 6 O3' G A 1 16.177 1.144 9.537 1.00 10.88 O ATOM 7 C2' G A 1 15.438 -0.348 11.224 1.00 11.72 C ATOM 8 O2' G A 1 16.798 -0.547 11.489 1.00 13.36 O ATOM 9 C1' G A 1 14.826 -0.111 12.579 1.00 11.35 C ATOM 10 N9 G A 1 13.381 -0.451 12.683 1.00 11.68 N ATOM 11 C8 G A 1 12.344 0.417 12.751 1.00 10.19 C ATOM 12 N7 G A 1 11.183 -0.135 12.869 1.00 11.49 N ATOM 13 C5 G A 1 11.461 -1.500 12.906 1.00 11.83 C ATOM 14 C6 G A 1 10.561 -2.604 13.047 1.00 10.80 C ATOM 15 O6 G A 1 9.331 -2.546 13.176 1.00 10.76 O ATOM 16 N1 G A 1 11.242 -3.839 12.983 1.00 11.08 N ATOM 17 C2 G A 1 12.613 -3.975 12.837 1.00 11.65 C ATOM 18 N2 G A 1 13.112 -5.192 12.850 1.00 11.29 N ATOM 19 N3 G A 1 13.458 -2.932 12.724 1.00 12.72 N ATOM 20 C4 G A 1 12.814 -1.714 12.761 1.00 11.92 C ATOM 21 P C A 2 15.861 0.852 8.000 1.00 12.33 P ATOM 22 OP1 C A 2 17.029 1.296 7.211 1.00 13.53 O ATOM 23 OP2 C A 2 14.525 1.401 7.653 1.00 11.23 O ATOM 24 O5' C A 2 15.764 -0.744 7.871 1.00 12.92 O ATOM 25 C5' C A 2 16.912 -1.585 8.041 1.00 11.22 C ATOM 26 C4' C A 2 16.470 -3.024 8.278 1.00 13.03 C ATOM 27 O4' C A 2 15.570 -3.096 9.407 1.00 13.80 O ATOM 28 C3' C A 2 15.590 -3.546 7.138 1.00 14.57 C ATOM 29 O3' C A 2 16.274 -3.931 5.930 1.00 14.37 O ATOM 30 C2' C A 2 14.854 -4.703 7.816 1.00 14.16 C ATOM 31 O2' C A 2 15.748 -5.835 7.960 1.00 15.60 O ATOM 32 C1' C A 2 14.536 -4.073 9.179 1.00 11.94 C ATOM 33 N1 C A 2 13.209 -3.435 9.257 1.00 11.44 N ATOM 34 C2 C A 2 12.086 -4.232 9.488 1.00 11.10 C ATOM 35 O2 C A 2 12.185 -5.451 9.604 1.00 11.63 O ATOM 36 N3 C A 2 10.860 -3.619 9.593 1.00 10.76 N ATOM 37 C4 C A 2 10.737 -2.290 9.492 1.00 8.32 C ATOM 38 N4 C A 2 9.551 -1.714 9.596 1.00 8.01 N ATOM 39 C5 C A 2 11.880 -1.472 9.252 1.00 10.51 C ATOM 40 C6 C A 2 13.076 -2.083 9.150 1.00 11.68 C ATOM 41 P G A 3 15.502 -3.844 4.495 1.00 14.88 P ATOM 42 OP1 G A 3 16.494 -4.311 3.497 1.00 16.03 O ATOM 43 OP2 G A 3 14.940 -2.490 4.382 1.00 15.75 O ATOM 44 O5' G A 3 14.297 -4.908 4.521 1.00 13.36 O ATOM 45 C5' G A 3 14.558 -6.309 4.615 1.00 12.75 C ATOM 46 C4' G A 3 13.286 -7.120 4.855 1.00 11.81 C ATOM 47 O4' G A 3 12.588 -6.751 6.032 1.00 11.17 O ATOM 48 C3' G A 3 12.252 -6.992 3.751 1.00 10.67 C ATOM 49 O3' G A 3 12.682 -7.725 2.618 1.00 11.71 O ATOM 50 C2' G A 3 11.053 -7.605 4.413 1.00 11.91 C ATOM 51 O2' G A 3 11.150 -9.035 4.662 1.00 14.44 O ATOM 52 C1' G A 3 11.194 -6.946 5.743 1.00 12.21 C ATOM 53 N9 G A 3 10.477 -5.688 5.936 1.00 11.90 N ATOM 54 C8 G A 3 11.000 -4.436 5.992 1.00 12.80 C ATOM 55 N7 G A 3 10.123 -3.506 6.267 1.00 13.96 N ATOM 56 C5 G A 3 8.928 -4.204 6.419 1.00 10.89 C ATOM 57 C6 G A 3 7.637 -3.716 6.766 1.00 9.46 C ATOM 58 O6 G A 3 7.283 -2.553 7.015 1.00 8.25 O ATOM 59 N1 G A 3 6.741 -4.764 6.805 1.00 9.25 N ATOM 60 C2 G A 3 7.020 -6.108 6.568 1.00 9.39 C ATOM 61 N2 G A 3 6.006 -6.965 6.639 1.00 7.49 N ATOM 62 N3 G A 3 8.236 -6.566 6.266 1.00 10.20 N ATOM 63 C4 G A 3 9.140 -5.555 6.207 1.00 11.63 C ATOM 64 P DA A 4 12.206 -7.428 1.146 1.00 13.84 P ATOM 65 OP1 DA A 4 13.131 -8.150 0.233 1.00 14.09 O ATOM 66 OP2 DA A 4 12.011 -5.959 0.978 1.00 16.45 O ATOM 67 O5' DA A 4 10.746 -8.041 1.010 1.00 12.39 O ATOM 68 C5' DA A 4 10.467 -9.440 1.168 1.00 12.42 C ATOM 69 C4' DA A 4 9.016 -9.673 1.535 1.00 11.93 C ATOM 70 O4' DA A 4 8.642 -9.109 2.791 1.00 10.02 O ATOM 71 C3' DA A 4 8.036 -9.058 0.514 1.00 13.36 C ATOM 72 O3' DA A 4 7.933 -9.886 -0.634 1.00 13.49 O ATOM 73 C2' DA A 4 6.782 -9.033 1.347 1.00 12.65 C ATOM 74 C1' DA A 4 7.309 -8.536 2.676 1.00 12.18 C ATOM 75 N9 DA A 4 7.338 -7.029 2.768 1.00 13.17 N ATOM 76 C8 DA A 4 8.389 -6.160 2.553 1.00 12.59 C ATOM 77 N7 DA A 4 8.121 -4.904 2.748 1.00 12.65 N ATOM 78 C5 DA A 4 6.803 -4.924 3.160 1.00 11.91 C ATOM 79 C6 DA A 4 5.933 -3.890 3.526 1.00 12.29 C ATOM 80 N6 DA A 4 6.322 -2.607 3.515 1.00 10.65 N ATOM 81 N1 DA A 4 4.673 -4.237 3.844 1.00 12.18 N ATOM 82 C2 DA A 4 4.305 -5.523 3.816 1.00 11.75 C ATOM 83 N3 DA A 4 5.043 -6.586 3.510 1.00 13.21 N ATOM 84 C4 DA A 4 6.301 -6.209 3.171 1.00 12.71 C ATOM 85 P DT A 5 7.635 -9.350 -2.108 1.00 14.28 P ATOM 86 OP1 DT A 5 7.521 -10.574 -2.945 1.00 14.73 O ATOM 87 OP2 DT A 5 8.566 -8.274 -2.516 1.00 11.37 O ATOM 88 O5' DT A 5 6.157 -8.717 -2.094 1.00 13.57 O ATOM 89 C5' DT A 5 4.942 -9.474 -1.959 1.00 11.65 C ATOM 90 C4' DT A 5 3.791 -8.578 -1.476 1.00 11.51 C ATOM 91 O4' DT A 5 4.047 -7.967 -0.198 1.00 12.65 O ATOM 92 C3' DT A 5 3.568 -7.414 -2.408 1.00 10.51 C ATOM 93 O3' DT A 5 2.900 -7.797 -3.591 1.00 9.71 O ATOM 94 C2' DT A 5 2.739 -6.590 -1.453 1.00 10.18 C ATOM 95 C1' DT A 5 3.458 -6.663 -0.136 1.00 10.21 C ATOM 96 N1 DT A 5 4.448 -5.556 -0.021 1.00 10.84 N ATOM 97 C2 DT A 5 3.992 -4.315 0.430 1.00 11.43 C ATOM 98 O2 DT A 5 2.837 -4.075 0.767 1.00 11.40 O ATOM 99 N3 DT A 5 4.920 -3.309 0.505 1.00 11.50 N ATOM 100 C4 DT A 5 6.243 -3.413 0.151 1.00 11.82 C ATOM 101 O4 DT A 5 6.965 -2.431 0.271 1.00 14.17 O ATOM 102 C5 DT A 5 6.646 -4.719 -0.339 1.00 11.36 C ATOM 103 C7 DT A 5 8.072 -4.948 -0.754 1.00 9.28 C ATOM 104 C6 DT A 5 5.759 -5.723 -0.411 1.00 10.99 C ATOM 105 P DA A 6 2.968 -6.876 -4.873 1.00 12.12 P ATOM 106 OP1 DA A 6 2.465 -7.603 -6.037 1.00 12.72 O ATOM 107 OP2 DA A 6 4.356 -6.369 -4.999 1.00 15.23 O ATOM 108 O5' DA A 6 2.053 -5.672 -4.524 1.00 13.16 O ATOM 109 C5' DA A 6 0.660 -5.914 -4.291 1.00 15.29 C ATOM 110 C4' DA A 6 -0.020 -4.712 -3.666 1.00 14.65 C ATOM 111 O4' DA A 6 0.672 -4.242 -2.497 1.00 14.93 O ATOM 112 C3' DA A 6 0.009 -3.568 -4.689 1.00 16.40 C ATOM 113 O3' DA A 6 -1.157 -3.662 -5.482 1.00 17.98 O ATOM 114 C2' DA A 6 -0.027 -2.370 -3.781 1.00 15.89 C ATOM 115 C1' DA A 6 0.813 -2.813 -2.625 1.00 13.85 C ATOM 116 N9 DA A 6 2.214 -2.390 -2.677 1.00 12.99 N ATOM 117 C8 DA A 6 3.341 -3.101 -2.981 1.00 11.11 C ATOM 118 N7 DA A 6 4.449 -2.422 -2.792 1.00 12.23 N ATOM 119 C5 DA A 6 4.020 -1.192 -2.291 1.00 11.18 C ATOM 120 C6 DA A 6 4.709 -0.031 -1.862 1.00 11.20 C ATOM 121 N6 DA A 6 6.049 0.098 -1.880 1.00 10.73 N ATOM 122 N1 DA A 6 3.950 1.004 -1.439 1.00 13.06 N ATOM 123 C2 DA A 6 2.617 0.882 -1.426 1.00 12.96 C ATOM 124 N3 DA A 6 1.865 -0.150 -1.779 1.00 11.37 N ATOM 125 C4 DA A 6 2.651 -1.168 -2.215 1.00 12.65 C ATOM 126 P DT A 7 -1.364 -2.937 -6.887 1.00 18.61 P ATOM 127 OP1 DT A 7 -2.584 -3.534 -7.474 1.00 21.10 O ATOM 128 OP2 DT A 7 -0.084 -2.881 -7.638 1.00 19.99 O ATOM 129 O5' DT A 7 -1.640 -1.411 -6.503 1.00 19.63 O ATOM 130 C5' DT A 7 -2.731 -0.958 -5.689 1.00 17.29 C ATOM 131 C4' DT A 7 -2.637 0.543 -5.453 1.00 15.78 C ATOM 132 O4' DT A 7 -1.457 1.054 -4.764 1.00 17.15 O ATOM 133 C3' DT A 7 -2.751 1.269 -6.781 1.00 15.20 C ATOM 134 O3' DT A 7 -3.617 2.329 -6.454 1.00 17.30 O ATOM 135 C2' DT A 7 -1.316 1.742 -7.045 1.00 13.50 C ATOM 136 C1' DT A 7 -0.702 1.959 -5.640 1.00 13.41 C ATOM 137 N1 DT A 7 0.755 1.647 -5.525 1.00 12.21 N ATOM 138 C2 DT A 7 1.583 2.580 -4.924 1.00 10.97 C ATOM 139 O2 DT A 7 1.216 3.678 -4.545 1.00 14.79 O ATOM 140 N3 DT A 7 2.896 2.247 -4.779 1.00 9.91 N ATOM 141 C4 DT A 7 3.470 1.065 -5.171 1.00 11.43 C ATOM 142 O4 DT A 7 4.671 0.851 -5.022 1.00 11.86 O ATOM 143 C5 DT A 7 2.558 0.131 -5.761 1.00 11.09 C ATOM 144 C7 DT A 7 3.112 -1.199 -6.222 1.00 11.09 C ATOM 145 C6 DT A 7 1.264 0.433 -5.922 1.00 11.00 C ATOM 146 P DA A 8 -5.201 2.219 -6.281 1.00 17.95 P ATOM 147 OP1 DA A 8 -5.622 3.469 -5.634 1.00 23.25 O ATOM 148 OP2 DA A 8 -5.670 0.963 -5.690 1.00 24.78 O ATOM 149 O5' DA A 8 -5.707 2.157 -7.757 1.00 19.51 O ATOM 150 C5' DA A 8 -5.198 3.081 -8.668 1.00 16.56 C ATOM 151 C4' DA A 8 -5.556 2.543 -9.969 1.00 16.30 C ATOM 152 O4' DA A 8 -6.952 2.720 -10.174 1.00 14.57 O ATOM 153 C3' DA A 8 -4.833 3.352 -10.993 1.00 17.20 C ATOM 154 O3' DA A 8 -3.504 2.828 -11.119 1.00 17.63 O ATOM 155 C2' DA A 8 -5.738 3.201 -12.200 1.00 14.96 C ATOM 156 C1' DA A 8 -7.124 3.042 -11.572 1.00 15.11 C ATOM 157 N9 DA A 8 -7.998 4.202 -11.784 1.00 13.40 N ATOM 158 C8 DA A 8 -9.267 4.158 -12.268 1.00 13.81 C ATOM 159 N7 DA A 8 -9.851 5.324 -12.337 1.00 15.66 N ATOM 160 C5 DA A 8 -8.908 6.193 -11.847 1.00 13.61 C ATOM 161 C6 DA A 8 -8.923 7.574 -11.693 1.00 15.36 C ATOM 162 N6 DA A 8 -9.986 8.332 -12.031 1.00 13.97 N ATOM 163 N1 DA A 8 -7.809 8.119 -11.177 1.00 14.20 N ATOM 164 C2 DA A 8 -6.774 7.359 -10.856 1.00 13.54 C ATOM 165 N3 DA A 8 -6.629 6.061 -10.972 1.00 15.06 N ATOM 166 C4 DA A 8 -7.765 5.522 -11.489 1.00 14.49 C ATOM 167 P C A 9 -2.231 3.713 -11.632 1.00 17.37 P ATOM 168 OP1 C A 9 -2.720 4.776 -12.531 1.00 15.36 O ATOM 169 OP2 C A 9 -1.216 2.792 -12.169 1.00 17.79 O ATOM 170 O5' C A 9 -1.558 4.402 -10.338 1.00 18.37 O ATOM 171 C5' C A 9 -2.189 5.421 -9.537 1.00 18.41 C ATOM 172 C4' C A 9 -1.147 6.187 -8.753 1.00 15.94 C ATOM 173 O4' C A 9 -0.492 5.318 -7.837 1.00 16.38 O ATOM 174 C3' C A 9 0.003 6.680 -9.630 1.00 13.99 C ATOM 175 O3' C A 9 -0.317 7.815 -10.456 1.00 13.79 O ATOM 176 C2' C A 9 1.010 7.018 -8.536 1.00 15.41 C ATOM 177 O2' C A 9 0.690 8.266 -7.883 1.00 13.94 O ATOM 178 C1' C A 9 0.846 5.799 -7.604 1.00 14.83 C ATOM 179 N1 C A 9 1.883 4.732 -7.833 1.00 14.72 N ATOM 180 C2 C A 9 3.185 4.941 -7.354 1.00 12.23 C ATOM 181 O2 C A 9 3.530 5.962 -6.757 1.00 12.56 O ATOM 182 N3 C A 9 4.102 3.968 -7.579 1.00 12.88 N ATOM 183 C4 C A 9 3.797 2.836 -8.228 1.00 11.73 C ATOM 184 N4 C A 9 4.758 1.932 -8.384 1.00 10.83 N ATOM 185 C5 C A 9 2.485 2.607 -8.735 1.00 11.93 C ATOM 186 C6 C A 9 1.562 3.568 -8.506 1.00 13.89 C ATOM 187 P G A 10 0.579 8.137 -11.704 1.00 13.70 P ATOM 188 OP1 G A 10 -0.203 9.074 -12.544 1.00 11.20 O ATOM 189 OP2 G A 10 0.856 6.861 -12.397 1.00 14.02 O ATOM 190 O5' G A 10 1.955 8.771 -11.270 1.00 13.36 O ATOM 191 C5' G A 10 1.988 10.084 -10.701 1.00 14.05 C ATOM 192 C4' G A 10 3.373 10.400 -10.166 1.00 13.86 C ATOM 193 O4' G A 10 3.819 9.338 -9.320 1.00 13.62 O ATOM 194 C3' G A 10 4.433 10.449 -11.254 1.00 11.91 C ATOM 195 O3' G A 10 4.428 11.718 -11.844 1.00 12.47 O ATOM 196 C2' G A 10 5.710 10.196 -10.472 1.00 11.99 C ATOM 197 O2' G A 10 6.114 11.303 -9.674 1.00 10.10 O ATOM 198 C1' G A 10 5.218 9.129 -9.529 1.00 11.93 C ATOM 199 N9 G A 10 5.429 7.721 -9.882 1.00 12.23 N ATOM 200 C8 G A 10 4.499 6.753 -10.183 1.00 13.43 C ATOM 201 N7 G A 10 5.008 5.564 -10.368 1.00 12.50 N ATOM 202 C5 G A 10 6.363 5.758 -10.133 1.00 12.34 C ATOM 203 C6 G A 10 7.436 4.833 -10.179 1.00 10.92 C ATOM 204 O6 G A 10 7.351 3.641 -10.434 1.00 11.73 O ATOM 205 N1 G A 10 8.675 5.429 -9.915 1.00 11.60 N ATOM 206 C2 G A 10 8.856 6.772 -9.639 1.00 10.21 C ATOM 207 N2 G A 10 10.091 7.224 -9.402 1.00 9.38 N ATOM 208 N3 G A 10 7.831 7.634 -9.593 1.00 11.94 N ATOM 209 C4 G A 10 6.628 7.076 -9.853 1.00 11.86 C ATOM 210 P C A 11 4.939 11.930 -13.294 1.00 12.69 P ATOM 211 OP1 C A 11 4.831 13.374 -13.534 1.00 14.93 O ATOM 212 OP2 C A 11 4.245 11.062 -14.251 1.00 13.46 O ATOM 213 O5' C A 11 6.454 11.514 -13.306 1.00 14.18 O ATOM 214 C5' C A 11 7.439 12.355 -12.680 1.00 14.18 C ATOM 215 C4' C A 11 8.847 11.788 -12.735 1.00 14.93 C ATOM 216 O4' C A 11 8.902 10.548 -12.055 1.00 14.20 O ATOM 217 C3' C A 11 9.331 11.448 -14.159 1.00 16.17 C ATOM 218 O3' C A 11 9.756 12.582 -14.942 1.00 18.18 O ATOM 219 C2' C A 11 10.477 10.439 -13.919 1.00 16.11 C ATOM 220 O2' C A 11 11.751 11.068 -13.526 1.00 17.46 O ATOM 221 C1' C A 11 9.836 9.672 -12.746 1.00 14.03 C ATOM 222 N1 C A 11 9.184 8.361 -13.065 1.00 13.70 N ATOM 223 C2 C A 11 9.976 7.234 -13.012 1.00 12.65 C ATOM 224 O2 C A 11 11.182 7.288 -12.797 1.00 15.46 O ATOM 225 N3 C A 11 9.384 6.035 -13.227 1.00 13.50 N ATOM 226 C4 C A 11 8.090 5.929 -13.490 1.00 10.71 C ATOM 227 N4 C A 11 7.609 4.710 -13.685 1.00 8.53 N ATOM 228 C5 C A 11 7.245 7.076 -13.545 1.00 10.84 C ATOM 229 C6 C A 11 7.836 8.261 -13.329 1.00 10.91 C TER 230 C A 11 HETATM 231 N1 SPM A 12 -2.204 7.019 -14.030 1.00 10.61 N HETATM 232 C2 SPM A 12 -3.090 8.132 -14.243 1.00 9.95 C HETATM 233 C3 SPM A 12 -3.991 8.359 -13.014 1.00 14.07 C HETATM 234 C4 SPM A 12 -3.426 9.143 -11.775 1.00 16.73 C HETATM 235 N5 SPM A 12 -2.849 10.495 -12.087 1.00 20.18 N HETATM 236 C6 SPM A 12 -2.728 11.440 -10.928 1.00 21.16 C HETATM 237 C7 SPM A 12 -3.660 12.661 -11.042 1.00 19.20 C HETATM 238 C8 SPM A 12 -3.237 13.630 -12.157 1.00 17.71 C HETATM 239 C9 SPM A 12 -4.312 14.671 -12.300 1.00 14.08 C HETATM 240 N10 SPM A 12 -4.163 15.570 -13.478 1.00 15.73 N HETATM 241 C11 SPM A 12 -5.329 16.493 -13.617 1.00 12.56 C HETATM 242 C12 SPM A 12 -5.750 17.231 -12.347 1.00 13.68 C HETATM 243 C13 SPM A 12 -6.867 18.207 -12.723 1.00 11.13 C HETATM 244 N14 SPM A 12 -7.469 18.752 -11.528 1.00 12.51 N HETATM 245 N1 SPM A 13 -7.169 5.434 -4.826 1.00 14.82 N HETATM 246 C2 SPM A 13 -7.300 6.145 -6.084 1.00 18.62 C HETATM 247 C3 SPM A 13 -7.093 7.601 -5.896 1.00 17.99 C HETATM 248 C4 SPM A 13 -7.249 8.233 -7.245 1.00 19.85 C HETATM 249 N5 SPM A 13 -6.975 9.680 -7.064 1.00 18.84 N HETATM 250 C6 SPM A 13 -7.293 10.434 -8.315 1.00 22.20 C HETATM 251 C7 SPM A 13 -7.550 11.932 -8.077 1.00 23.80 C HETATM 252 C8 SPM A 13 -6.413 12.650 -7.328 1.00 24.19 C HETATM 253 C9 SPM A 13 -6.593 14.154 -7.473 1.00 26.14 C HETATM 254 N10 SPM A 13 -5.915 14.728 -6.302 1.00 26.19 N HETATM 255 C11 SPM A 13 -5.499 16.157 -6.367 1.00 27.34 C HETATM 256 C12 SPM A 13 -4.606 16.242 -5.110 1.00 26.41 C HETATM 257 C13 SPM A 13 -3.780 17.485 -4.890 1.00 27.63 C HETATM 258 N14 SPM A 13 -2.598 17.586 -5.727 1.00 26.33 N HETATM 259 O HOH A 14 0.000 10.953 -14.390 0.50 34.83 O HETATM 260 O HOH A 15 21.372 0.666 12.877 1.00 14.95 O HETATM 261 O HOH A 16 18.836 1.321 11.645 1.00 20.50 O HETATM 262 O HOH A 17 4.373 -0.827 -9.910 1.00 9.48 O HETATM 263 O HOH A 18 -4.190 8.711 -7.801 1.00 15.51 O HETATM 264 O HOH A 19 5.839 -10.258 5.833 1.00 15.74 O HETATM 265 O HOH A 20 19.601 2.276 9.097 1.00 46.77 O HETATM 266 O HOH A 21 -10.359 11.289 -10.260 1.00 32.14 O HETATM 267 O HOH A 22 7.683 13.504 -16.913 1.00 29.45 O HETATM 268 O HOH A 23 -4.381 4.936 -14.961 1.00 16.72 O HETATM 269 O HOH A 24 -6.781 10.851 -11.697 1.00 32.12 O HETATM 270 O HOH A 25 9.498 1.361 8.843 1.00 2.00 O HETATM 271 O HOH A 26 8.683 10.104 -8.408 1.00 41.51 O HETATM 272 O HOH A 27 11.416 9.921 -8.126 1.00 33.08 O HETATM 273 O HOH A 28 0.269 17.434 -6.082 1.00 26.67 O HETATM 274 O HOH A 29 2.718 9.164 -5.813 1.00 29.55 O HETATM 275 O HOH A 30 11.498 -8.050 -4.007 1.00 27.32 O HETATM 276 O HOH A 31 6.603 -3.418 -3.950 1.00 18.82 O HETATM 277 O HOH A 32 7.166 -6.090 -4.080 1.00 34.94 O HETATM 278 O HOH A 33 9.679 -13.383 -2.112 1.00 36.40 O HETATM 279 O HOH A 34 -1.585 -4.040 -0.089 1.00 37.38 O HETATM 280 O HOH A 35 9.051 -0.988 -1.555 1.00 44.61 O HETATM 281 O HOH A 36 15.440 -6.459 -1.376 1.00 31.53 O HETATM 282 O HOH A 37 1.440 -8.476 -8.548 1.00 28.71 O HETATM 283 O HOH A 38 13.170 11.191 -11.046 1.00 46.21 O HETATM 284 O HOH A 39 -0.763 13.936 -8.689 1.00 29.05 O HETATM 285 O HOH A 40 11.019 -11.115 -3.947 1.00 35.80 O HETATM 286 O HOH A 41 13.248 -9.147 -2.045 1.00 33.77 O HETATM 287 O HOH A 42 0.835 -0.730 -9.475 1.00 26.57 O HETATM 288 O HOH A 43 1.340 11.647 -7.323 1.00 42.76 O HETATM 289 O HOH A 44 -3.125 12.901 -5.754 1.00 34.45 O HETATM 290 O HOH A 45 -3.577 -3.275 -2.604 1.00 45.36 O HETATM 291 O HOH A 46 1.939 3.942 -12.144 1.00 35.70 O HETATM 292 O HOH A 47 11.397 -5.871 -2.597 1.00 42.21 O HETATM 293 O HOH A 48 -5.729 -3.865 -7.003 1.00 34.08 O HETATM 294 O HOH A 49 -0.595 -2.168 -12.286 1.00 37.78 O HETATM 295 O HOH A 50 19.179 1.860 5.724 1.00 37.38 O HETATM 296 O HOH A 51 2.809 1.238 -13.421 1.00 40.98 O CONECT 231 232 CONECT 232 231 233 CONECT 233 232 234 CONECT 234 233 235 CONECT 235 234 236 CONECT 236 235 237 CONECT 237 236 238 CONECT 238 237 239 CONECT 239 238 240 CONECT 240 239 241 CONECT 241 240 242 CONECT 242 241 243 CONECT 243 242 244 CONECT 244 243 CONECT 245 246 CONECT 246 245 247 CONECT 247 246 248 CONECT 248 247 249 CONECT 249 248 250 CONECT 250 249 251 CONECT 251 250 252 CONECT 252 251 253 CONECT 253 252 254 CONECT 254 253 255 CONECT 255 254 256 CONECT 256 255 257 CONECT 257 256 258 CONECT 258 257 MASTER 262 0 2 0 0 0 5 6 295 1 28 1 END