PDB Short entry for 2A36 HEADER SIGNALING PROTEIN 23-JUN-05 2A36 TITLE SOLUTION STRUCTURE OF THE N-TERMINAL SH3 DOMAIN OF DRK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN E(SEV)2B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH3 DOMAIN, RESIDUES 1-59; COMPND 5 SYNONYM: PROTEIN ENHANCER OF SEVENLESS 2B, SH2-SH3 ADAPTER PROTEIN COMPND 6 DRK, DOWNSTREAM OF RECEPTOR KINASE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: DRK, E(SEV)2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS DROSOPHILA MELANOGASTER, SH3 FRAGMENT, DRK, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.D.FORMAN-KAY,I.BEZSONOVA,A.SINGER,W.-Y.CHOY,M.TOLLINGER REVDAT 3 09-MAR-22 2A36 1 REMARK REVDAT 2 24-FEB-09 2A36 1 VERSN REVDAT 1 13-DEC-05 2A36 0 JRNL AUTH I.BEZSONOVA,A.SINGER,W.-Y.CHOY,M.TOLLINGER,J.D.FORMAN-KAY JRNL TITL STRUCTURAL COMPARISON OF THE UNSTABLE DRKN SH3 DOMAIN AND A JRNL TITL 2 STABLE MUTANT JRNL REF BIOCHEMISTRY V. 44 15550 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16300404 JRNL DOI 10.1021/BI0512795 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, CNS 1.0 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A36 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033432. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 500MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM DRKN SH3 DOMAIN 15N,13C, 500 REMARK 210 MM NA2SO4, 50 MM PHOSPHATE REMARK 210 BUFFER, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 200 MS NOESY; 3D 150 MS 15N REMARK 210 -EDITED NOESY; 2D 150 MS NOESY; REMARK 210 1H/D AMIDE EXCHANGE EXPERIMENT; REMARK 210 HNCO-BASED 3D EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HNCO-BASED 3D EXPERIMENTS WERE USED FOR MEASURING 15N-1HN, REMARK 210 15N-13C', 13C'-13CA RDCS AND C'-CSA RESTRAINTS.13CA-13CB AND REMARK 210 13CA-1HA RDCS WERE ALSO MEASURED. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUE ANI PRESENT IN THE CONSTRAINT FILE DEFINES THE REMARK 400 ALIGNMENT FRAME. INCLUDE THESE COORDINATES TO USE THE REMARK 400 RESIDUAL DIPOLAR COUPLING AND/OR CARBONYL CHEMICAL SHIFT REMARK 400 RESTRAINTS REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 7 125.42 -170.89 REMARK 500 1 ALA A 11 145.13 -17.20 REMARK 500 1 LEU A 28 -23.49 -145.80 REMARK 500 1 GLU A 31 -52.27 162.30 REMARK 500 1 SER A 34 23.83 -60.52 REMARK 500 1 ASN A 35 -29.44 -143.83 REMARK 500 1 ASP A 42 -81.32 62.73 REMARK 500 1 LYS A 56 50.15 141.73 REMARK 500 1 HIS A 58 -124.16 67.57 REMARK 500 2 ALA A 11 146.09 -16.96 REMARK 500 2 LEU A 28 -19.29 -148.57 REMARK 500 2 GLU A 31 -50.28 162.27 REMARK 500 2 SER A 34 24.77 -60.93 REMARK 500 2 ASN A 35 -29.85 -143.41 REMARK 500 2 ASP A 42 -81.57 62.80 REMARK 500 2 PRO A 49 137.21 -27.13 REMARK 500 2 LYS A 56 -154.82 -93.87 REMARK 500 2 HIS A 58 -124.93 68.04 REMARK 500 3 HIS A 7 121.32 -171.29 REMARK 500 3 ALA A 11 145.43 -17.21 REMARK 500 3 THR A 22 6.47 80.55 REMARK 500 3 LEU A 28 -25.54 -141.88 REMARK 500 3 GLU A 31 -48.58 162.29 REMARK 500 3 SER A 34 25.80 -61.98 REMARK 500 3 ASN A 35 -28.32 -146.34 REMARK 500 3 ASP A 42 -81.45 62.12 REMARK 500 3 PRO A 49 140.23 -28.89 REMARK 500 3 LYS A 56 45.86 145.38 REMARK 500 3 HIS A 58 -133.17 -118.04 REMARK 500 4 HIS A 7 124.97 -171.20 REMARK 500 4 ALA A 11 146.18 -17.03 REMARK 500 4 ASP A 15 31.46 -86.99 REMARK 500 4 THR A 22 -6.66 84.83 REMARK 500 4 LEU A 28 -20.08 -147.94 REMARK 500 4 GLU A 31 -49.82 161.51 REMARK 500 4 SER A 34 25.85 -61.41 REMARK 500 4 ASN A 35 -29.16 -146.60 REMARK 500 4 ASP A 42 7.88 50.01 REMARK 500 4 ASN A 57 56.86 -103.28 REMARK 500 5 HIS A 7 124.34 -171.07 REMARK 500 5 ALA A 11 148.10 -16.99 REMARK 500 5 LEU A 28 -20.66 -146.52 REMARK 500 5 GLU A 31 -33.07 165.93 REMARK 500 5 SER A 34 26.43 -62.36 REMARK 500 5 ASN A 35 -24.54 -149.75 REMARK 500 5 ASP A 42 13.39 48.60 REMARK 500 5 ASN A 57 51.48 -106.25 REMARK 500 5 HIS A 58 7.83 -158.84 REMARK 500 6 ALA A 11 146.48 -16.43 REMARK 500 6 LEU A 28 -20.50 -147.75 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A37 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE T22G MUTANT OF N-TERMINAL SH3 DOMAIN OF REMARK 900 DRK DBREF 2A36 A 1 59 UNP Q08012 DRK_DROME 1 59 SEQRES 1 A 59 MET GLU ALA ILE ALA LYS HIS ASP PHE SER ALA THR ALA SEQRES 2 A 59 ASP ASP GLU LEU SER PHE ARG LYS THR GLN ILE LEU LYS SEQRES 3 A 59 ILE LEU ASN MET GLU ASP ASP SER ASN TRP TYR ARG ALA SEQRES 4 A 59 GLU LEU ASP GLY LYS GLU GLY LEU ILE PRO SER ASN TYR SEQRES 5 A 59 ILE GLU MET LYS ASN HIS ASP SHEET 1 A 5 LYS A 44 PRO A 49 0 SHEET 2 A 5 TRP A 36 LEU A 41 -1 N ALA A 39 O GLY A 46 SHEET 3 A 5 GLN A 23 ASN A 29 -1 N ASN A 29 O ARG A 38 SHEET 4 A 5 ALA A 3 ALA A 5 -1 N ALA A 3 O LEU A 25 SHEET 5 A 5 GLU A 54 MET A 55 -1 O GLU A 54 N ILE A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000