PDB Short entry for 2A9K HEADER PROTEIN BINDING/TRANSFERASE 12-JUL-05 2A9K TITLE CRYSTAL STRUCTURE OF THE C3BOT-NAD-RALA COMPLEX REVEALS A NOVEL TYPE TITLE 2 OF ACTION OF A BACTERIAL EXOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAL-A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: EXOENZYME C3; COMPND 9 EC: 2.4.2.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RALA, RAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM D PHAGE; SOURCE 13 ORGANISM_TAXID: 29342; SOURCE 14 GENE: C3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS EXOENZYME C3, BACTERIAL ADP-RIBOSYLTRANSFERASE, RAL, RHO, GDP- KEYWDS 2 BINDING, PROTEIN BINDING-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PAUTSCH,M.VOGELSGESANG,J.TRANKLE,C.HERRMANN,K.AKTORIES REVDAT 6 23-AUG-23 2A9K 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2A9K 1 REMARK REVDAT 4 13-JUL-11 2A9K 1 VERSN REVDAT 3 24-FEB-09 2A9K 1 VERSN REVDAT 2 01-NOV-05 2A9K 1 JRNL REVDAT 1 11-OCT-05 2A9K 0 JRNL AUTH A.PAUTSCH,M.VOGELSGESANG,J.TRANKLE,C.HERRMANN,K.AKTORIES JRNL TITL CRYSTAL STRUCTURE OF THE C3BOT-RALA COMPLEX REVEALS A NOVEL JRNL TITL 2 TYPE OF ACTION OF A BACTERIAL EXOENZYME. JRNL REF EMBO J. V. 24 3670 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16177825 JRNL DOI 10.1038/SJ.EMBOJ.7600813 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.P.HOLBOURN,J.M.SUTTON,H.R.EVANS,C.C.SHONE,K.R.ACHARYA REMARK 1 TITL MOLECULAR RECOGNITION OF AN ADP-RIBOSYLATING CLOSTRIDIUM REMARK 1 TITL 2 BOTULINUM C3 EXOENZYME BY RALA GTPASE. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 5357 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15809419 REMARK 1 DOI 10.1073/PNAS.0501525102 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3122 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4211 ; 1.110 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 5.202 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;38.090 ;24.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;13.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2316 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1430 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2142 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1935 ; 0.485 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3004 ; 0.816 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 1.291 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 2.080 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4513 0.1970 7.2727 REMARK 3 T TENSOR REMARK 3 T11: -0.0369 T22: -0.0114 REMARK 3 T33: -0.0592 T12: 0.0053 REMARK 3 T13: -0.0086 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.8820 L22: 1.2407 REMARK 3 L33: 0.6421 L12: -0.1070 REMARK 3 L13: -0.0151 L23: -0.0860 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0656 S13: -0.0862 REMARK 3 S21: -0.0198 S22: -0.0243 S23: 0.0138 REMARK 3 S31: -0.0260 S32: -0.0009 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1117 25.2547 27.9962 REMARK 3 T TENSOR REMARK 3 T11: -0.0310 T22: -0.0221 REMARK 3 T33: -0.0400 T12: -0.0043 REMARK 3 T13: -0.0081 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4198 L22: 0.5600 REMARK 3 L33: 0.7983 L12: 0.0034 REMARK 3 L13: -0.0585 L23: 0.1415 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0439 S13: 0.0304 REMARK 3 S21: -0.0168 S22: -0.0356 S23: 0.0336 REMARK 3 S31: -0.0134 S32: 0.0159 S33: 0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1G24, 1UAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE PH 7.0, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.92500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 ILE A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 SER A 183 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 PRO B 31 REMARK 465 GLY B 32 REMARK 465 ILE B 33 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 GLY B 36 REMARK 465 GLY B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 39 REMARK 465 SER B 40 REMARK 465 ALA B 41 REMARK 465 TYR B 42 REMARK 465 SER B 43 REMARK 465 ASN B 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 -71.14 -84.09 REMARK 500 LYS A 128 41.12 71.41 REMARK 500 LEU A 131 41.09 -100.26 REMARK 500 ARG A 161 -1.51 77.21 REMARK 500 ASN A 163 14.06 57.71 REMARK 500 ASN B 179 47.94 -108.83 REMARK 500 ALA B 200 123.88 -171.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 28 OG REMARK 620 2 GDP A 500 O3B 91.9 REMARK 620 3 HOH A 508 O 85.4 94.8 REMARK 620 4 HOH A 519 O 173.3 92.2 89.0 REMARK 620 5 HOH A 526 O 91.8 89.2 175.2 93.5 REMARK 620 6 HOH A 593 O 91.4 172.9 91.7 85.1 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A78 RELATED DB: PDB REMARK 900 RALA-GDP-C3BOT COMPLEX REMARK 900 RELATED ID: 1U8Z RELATED DB: PDB REMARK 900 RALA-GDP REMARK 900 RELATED ID: 1U90 RELATED DB: PDB REMARK 900 RALA-GTP REMARK 900 RELATED ID: 1UAD RELATED DB: PDB REMARK 900 RALA-GPPNHP-SEC5 REMARK 900 RELATED ID: 2BOV RELATED DB: PDB REMARK 900 RALA-GDP-C3BOT COMPLEX REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 EXOENZYME C3, CLOSTRIDIUM BOTULINUM DBREF 2A9K A 9 183 UNP P11233 RALA_HUMAN 9 183 DBREF 2A9K B 41 251 UNP P15879 ARC3_CBDP 41 251 SEQADV 2A9K GLY A -3 UNP P11233 CLONING ARTIFACT SEQADV 2A9K SER A -2 UNP P11233 CLONING ARTIFACT SEQADV 2A9K PRO A -1 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 0 UNP P11233 CLONING ARTIFACT SEQADV 2A9K ILE A 1 UNP P11233 CLONING ARTIFACT SEQADV 2A9K SER A 2 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 3 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 4 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 5 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 6 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY A 7 UNP P11233 CLONING ARTIFACT SEQADV 2A9K SER A 8 UNP P11233 CLONING ARTIFACT SEQADV 2A9K GLY B 29 UNP P15879 CLONING ARTIFACT SEQADV 2A9K SER B 30 UNP P15879 CLONING ARTIFACT SEQADV 2A9K PRO B 31 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 32 UNP P15879 CLONING ARTIFACT SEQADV 2A9K ILE B 33 UNP P15879 CLONING ARTIFACT SEQADV 2A9K SER B 34 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 35 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 36 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 37 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 38 UNP P15879 CLONING ARTIFACT SEQADV 2A9K GLY B 39 UNP P15879 CLONING ARTIFACT SEQADV 2A9K SER B 40 UNP P15879 CLONING ARTIFACT SEQRES 1 A 187 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY SER GLN SEQRES 2 A 187 ASN SER LEU ALA LEU HIS LYS VAL ILE MET VAL GLY SER SEQRES 3 A 187 GLY GLY VAL GLY LYS SER ALA LEU THR LEU GLN PHE MET SEQRES 4 A 187 TYR ASP GLU PHE VAL GLU ASP TYR GLU PRO THR LYS ALA SEQRES 5 A 187 ASP SER TYR ARG LYS LYS VAL VAL LEU ASP GLY GLU GLU SEQRES 6 A 187 VAL GLN ILE ASP ILE LEU ASP THR ALA GLY GLN GLU ASP SEQRES 7 A 187 TYR ALA ALA ILE ARG ASP ASN TYR PHE ARG SER GLY GLU SEQRES 8 A 187 GLY PHE LEU CYS VAL PHE SER ILE THR GLU MET GLU SER SEQRES 9 A 187 PHE ALA ALA THR ALA ASP PHE ARG GLU GLN ILE LEU ARG SEQRES 10 A 187 VAL LYS GLU ASP GLU ASN VAL PRO PHE LEU LEU VAL GLY SEQRES 11 A 187 ASN LYS SER ASP LEU GLU ASP LYS ARG GLN VAL SER VAL SEQRES 12 A 187 GLU GLU ALA LYS ASN ARG ALA GLU GLN TRP ASN VAL ASN SEQRES 13 A 187 TYR VAL GLU THR SER ALA LYS THR ARG ALA ASN VAL ASP SEQRES 14 A 187 LYS VAL PHE PHE ASP LEU MET ARG GLU ILE ARG ALA ARG SEQRES 15 A 187 LYS MET GLU ASP SER SEQRES 1 B 223 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY SER ALA SEQRES 2 B 223 TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP GLN SEQRES 3 B 223 ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR GLY SEQRES 4 B 223 LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR THR SEQRES 5 B 223 LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN ASN SEQRES 6 B 223 LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE LYS SEQRES 7 B 223 GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET LYS SEQRES 8 B 223 THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP PRO SEQRES 9 B 223 ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU ASN SEQRES 10 B 223 SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS ALA SEQRES 11 B 223 LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR GLY SEQRES 12 B 223 TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE ALA SEQRES 13 B 223 GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS GLY SEQRES 14 B 223 SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE ALA SEQRES 15 B 223 GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR TYR SEQRES 16 B 223 HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS GLN SEQRES 17 B 223 ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE ASN SEQRES 18 B 223 PRO LYS HET MG A 300 1 HET GDP A 500 28 HET NAD B 400 44 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 MG MG 2+ FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 HOH *210(H2 O) HELIX 1 1 GLY A 26 ASP A 37 1 12 HELIX 2 2 TYR A 75 GLY A 86 1 12 HELIX 3 3 GLU A 97 GLU A 116 1 20 HELIX 4 4 LYS A 128 ARG A 135 5 8 HELIX 5 5 SER A 138 TRP A 149 1 12 HELIX 6 6 ASN A 163 GLU A 181 1 19 HELIX 7 7 ASN B 51 GLY B 67 1 17 HELIX 8 8 SER B 69 ASN B 93 1 25 HELIX 9 9 PRO B 101 PHE B 115 1 15 HELIX 10 10 ASP B 131 GLN B 140 5 10 HELIX 11 11 ASN B 151 LEU B 163 1 13 HELIX 12 12 SER B 181 ARG B 186 5 6 HELIX 13 13 ASP B 204 SER B 207 5 4 SHEET 1 A 6 ASP A 49 LEU A 57 0 SHEET 2 A 6 GLU A 60 ASP A 68 -1 O GLU A 60 N LEU A 57 SHEET 3 A 6 LEU A 14 VAL A 20 1 N VAL A 17 O ASP A 65 SHEET 4 A 6 GLY A 88 SER A 94 1 O VAL A 92 N VAL A 20 SHEET 5 A 6 PHE A 122 ASN A 127 1 O ASN A 127 N PHE A 93 SHEET 6 A 6 ASN A 152 GLU A 155 1 O ASN A 152 N LEU A 124 SHEET 1 B 5 ILE B 124 ASP B 130 0 SHEET 2 B 5 ILE B 188 VAL B 194 -1 O THR B 190 N ARG B 128 SHEET 3 B 5 ILE B 237 THR B 246 1 O ILE B 239 N ILE B 189 SHEET 4 B 5 SER B 221 LEU B 230 -1 N ARG B 229 O ILE B 238 SHEET 5 B 5 ASP B 166 GLU B 169 -1 N ARG B 167 O TYR B 223 SHEET 1 C 3 ILE B 173 SER B 176 0 SHEET 2 C 3 GLU B 214 LEU B 217 -1 O MET B 215 N THR B 175 SHEET 3 C 3 GLY B 201 TYR B 202 -1 N GLY B 201 O LEU B 216 LINK OG SER A 28 MG MG A 300 1555 1555 2.17 LINK MG MG A 300 O3B GDP A 500 1555 1555 2.07 LINK MG MG A 300 O HOH A 508 1555 1555 2.03 LINK MG MG A 300 O HOH A 519 1555 1555 2.01 LINK MG MG A 300 O HOH A 526 1555 1555 2.01 LINK MG MG A 300 O HOH A 593 1555 1555 2.04 CISPEP 1 GLU A 181 ASP A 182 0 6.07 SITE 1 AC1 6 SER A 28 GDP A 500 HOH A 508 HOH A 519 SITE 2 AC1 6 HOH A 526 HOH A 593 SITE 1 AC2 23 GLY A 24 VAL A 25 GLY A 26 LYS A 27 SITE 2 AC2 23 SER A 28 ALA A 29 GLU A 41 ASP A 42 SITE 3 AC2 23 ASN A 127 LYS A 128 ASP A 130 LEU A 131 SITE 4 AC2 23 SER A 157 ALA A 158 LYS A 159 MG A 300 SITE 5 AC2 23 HOH A 504 HOH A 507 HOH A 508 HOH A 519 SITE 6 AC2 23 HOH A 523 HOH A 526 HOH A 579 SITE 1 AC3 25 THR B 80 ALA B 83 SER B 84 ASN B 87 SITE 2 AC3 25 ARG B 91 ARG B 128 GLY B 129 ASP B 130 SITE 3 AC3 25 ASP B 131 ALA B 133 TYR B 134 ARG B 167 SITE 4 AC3 25 GLU B 169 SER B 174 THR B 175 PHE B 183 SITE 5 AC3 25 ARG B 186 GLN B 212 GLU B 214 HOH B 414 SITE 6 AC3 25 HOH B 424 HOH B 461 HOH B 498 HOH B 499 SITE 7 AC3 25 HOH B 500 CRYST1 35.260 113.850 56.310 90.00 106.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028361 0.000000 0.008347 0.00000 SCALE2 0.000000 0.008783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018512 0.00000