PDB Short entry for 2AB3 HEADER RNA BINDING PROTEIN 14-JUL-05 2AB3 TITLE SOLUTION STRUCTURES AND CHARACTERIZATION OF HIV RRE IIB RNA TARGETING TITLE 2 ZINC FINGER PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZNF29; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SINGLE ZINC FINGER PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYSS (NOVAGEN); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32B(+)EK/LIC KEYWDS ZINC FINGER PROTEIN, BETA BETA ALPHA, RREIIB-TR, RNA BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR S.H.MISHRA,C.M.SHELLEY,M.K.DARBY,M.W.GERMANN REVDAT 4 09-MAR-22 2AB3 1 REMARK LINK REVDAT 3 24-FEB-09 2AB3 1 VERSN REVDAT 2 24-APR-07 2AB3 1 JRNL REVDAT 1 02-AUG-05 2AB3 0 JRNL AUTH S.H.MISHRA,C.M.SHELLEY,D.J.BARROW,M.K.DARBY,M.W.GERMANN JRNL TITL SOLUTION STRUCTURES AND CHARACTERIZATION OF HUMAN JRNL TITL 2 IMMUNODEFICIENCY VIRUS REV RESPONSIVE ELEMENT IIB RNA JRNL TITL 3 TARGETING ZINC FINGER PROTEINS. JRNL REF BIOPOLYMERS V. 83 352 2006 JRNL REFN ISSN 0006-3525 JRNL PMID 16826557 JRNL DOI 10.1002/BIP.20565 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, DYANA 1.5, AMBER 7 REMARK 3 AUTHORS : BRUKER ANALYTIK GMBH (XWINNMR), GUENTERT, P. REMARK 3 (DYANA), CASE ET AL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE IS BASED ON A TOTAL OF 316 RESTRAINTS, 249 ARE REMARK 3 NOE-DERIVED DISTANCE RESTRAINTS, 43 DIHEDRAL ANGLE RESTRAINTS, 16 REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS, 8 DISTANCE CONSTRAINTS REMARK 3 FROM REMARK 3 COORDINATED ZINC ION. REMARK 4 REMARK 4 2AB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033700. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : ~ 35 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM ZNF29; 10 MM PHOSPHATE REMARK 210 BUFFER PH 6.8, 2MM REMARK 210 MERCAPTOETHANOL, 200 UM SODIUM REMARK 210 AZIDE, 50 UM ZINC SULFATE, 90% REMARK 210 H2O, 10% D2O; 1.2 MM ZNF29; 10 REMARK 210 MM PHOSPHATE BUFFER PH *6.4, 2MM REMARK 210 MERCAPTOETHANOL, 200 UM SODIUM REMARK 210 AZIDE, 50 UM ZINC SULFATE,"100%" REMARK 210 D2O; 1.2 MM ZNF29 15N; 10 MM REMARK 210 PHOSPHATE BUFFER PH 6.8, 2MM REMARK 210 MERCAPTOETHANOL, 200 UM SODIUM REMARK 210 AZIDE, 50 UM ZINC SULFATE, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; E REMARK 210 -COSY; 13 C HSQC; 15 N HSQC; REMARK 210 HMQC NOESY; HMQC TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 13 C HSQC DONE AT NATURAL ABUNDANCE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 15.02 -68.94 REMARK 500 GLU A 8 32.81 -68.94 REMARK 500 ASN A 9 11.10 -158.91 REMARK 500 CYS A 10 -62.86 -148.18 REMARK 500 ASN A 15 25.52 -72.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 30 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 10 SG 133.8 REMARK 620 3 HIS A 23 NE2 108.5 93.4 REMARK 620 4 HIS A 27 NE2 97.7 125.0 84.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 30 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS NOT YET BEEN DEPOSITED IN ANY DATABASE DBREF 2AB3 A 1 29 PDB 2AB3 2AB3 1 29 SEQRES 1 A 29 MET VAL TYR VAL CYS HIS PHE GLU ASN CYS GLY ARG SER SEQRES 2 A 29 PHE ASN ASP ARG ARG LYS LEU ASN ARG HIS LYS LYS ILE SEQRES 3 A 29 HIS THR GLY HET ZN A 30 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 16 LYS A 25 1 10 HELIX 2 2 ILE A 26 THR A 28 5 3 SHEET 1 A 2 TYR A 3 CYS A 5 0 SHEET 2 A 2 ARG A 12 PHE A 14 -1 O PHE A 14 N TYR A 3 LINK SG CYS A 5 ZN ZN A 30 1555 1555 2.26 LINK SG CYS A 10 ZN ZN A 30 1555 1555 2.26 LINK NE2 HIS A 23 ZN ZN A 30 1555 1555 2.22 LINK NE2 HIS A 27 ZN ZN A 30 1555 1555 2.23 SITE 1 AC1 4 CYS A 5 CYS A 10 HIS A 23 HIS A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000