PDB Short entry for 2AC3 HEADER TRANSFERASE 18-JUL-05 2AC3 TITLE STRUCTURE OF HUMAN MNK2 KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE-INTERACTING SERINE/THREONINE KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 70-385; COMPND 5 SYNONYM: MAP KINASE SIGNAL-INTEGRATING KINASE 2, MNK2; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS DFD MOTIF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JAUCH,M.C.WAHL,C.NETTER,S.JAKEL,K.SCHREITER,B.AICHER,H.JACKLE REVDAT 5 13-MAR-24 2AC3 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2AC3 1 VERSN REVDAT 3 03-NOV-10 2AC3 1 JRNL REVDAT 2 24-FEB-09 2AC3 1 VERSN REVDAT 1 04-OCT-05 2AC3 0 JRNL AUTH R.JAUCH,S.JAKEL,C.NETTER,K.SCHREITER,B.AICHER,H.JACKLE, JRNL AUTH 2 M.C.WAHL JRNL TITL CRYSTAL STRUCTURES OF THE MNK2 KINASE DOMAIN REVEAL AN JRNL TITL 2 INHIBITORY CONFORMATION AND A ZINC BINDING SITE. JRNL REF STRUCTURE V. 13 1559 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16216586 JRNL DOI 10.1016/J.STR.2005.07.013 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 24664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : 2.75000 REMARK 3 B12 (A**2) : -0.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2266 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3060 ; 1.207 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 5.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.648 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;16.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.152 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1747 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 974 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1555 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 4.357 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2212 ; 5.630 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 958 ; 4.677 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 848 ; 6.400 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 128 REMARK 3 RESIDUE RANGE : A 154 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3010 34.0820 10.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.0256 T22: -0.0207 REMARK 3 T33: -0.1915 T12: -0.0536 REMARK 3 T13: -0.0042 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 4.5710 L22: 2.5582 REMARK 3 L33: 2.2195 L12: 1.9455 REMARK 3 L13: 2.8960 L23: 1.6460 REMARK 3 S TENSOR REMARK 3 S11: 0.3010 S12: -0.7611 S13: -0.3660 REMARK 3 S21: 0.3393 S22: -0.2828 S23: 0.3725 REMARK 3 S31: 0.3537 S32: -0.5270 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 153 REMARK 3 RESIDUE RANGE : A 204 A 258 REMARK 3 RESIDUE RANGE : A 263 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0060 58.2180 7.7040 REMARK 3 T TENSOR REMARK 3 T11: -0.1519 T22: -0.1828 REMARK 3 T33: -0.1826 T12: -0.0681 REMARK 3 T13: -0.0762 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.0262 L22: 2.0337 REMARK 3 L33: 2.5167 L12: -2.0000 REMARK 3 L13: 2.2786 L23: -1.5077 REMARK 3 S TENSOR REMARK 3 S11: -0.2456 S12: -0.1082 S13: 0.8938 REMARK 3 S21: -0.0821 S22: 0.0027 S23: -0.2995 REMARK 3 S31: -0.2045 S32: -0.1068 S33: 0.2429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : BW6 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SALT, PH 7, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.23400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.11700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.11700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.23400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 LEU A 235 REMARK 465 ASN A 236 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 CYS A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ILE A 242 REMARK 465 SER A 243 REMARK 465 THR A 244 REMARK 465 PRO A 245 REMARK 465 GLU A 246 REMARK 465 LEU A 247 REMARK 465 LEU A 248 REMARK 465 THR A 249 REMARK 465 PRO A 250 REMARK 465 ASP A 306 REMARK 465 ARG A 307 REMARK 465 GLY A 308 REMARK 465 GLU A 309 REMARK 465 GLY A 370 REMARK 465 CYS A 371 REMARK 465 ALA A 372 REMARK 465 PRO A 373 REMARK 465 GLU A 374 REMARK 465 ASN A 375 REMARK 465 THR A 376 REMARK 465 LEU A 377 REMARK 465 PRO A 378 REMARK 465 THR A 379 REMARK 465 PRO A 380 REMARK 465 MET A 381 REMARK 465 VAL A 382 REMARK 465 LEU A 383 REMARK 465 GLN A 384 REMARK 465 ARG A 385 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 226 REMARK 475 PHE A 227 REMARK 475 ASP A 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 79 O VAL A 82 2.02 REMARK 500 O HOH A 646 O HOH A 648 2.05 REMARK 500 O HOH A 639 O HOH A 641 2.08 REMARK 500 O HOH A 647 O HOH A 648 2.12 REMARK 500 OE2 GLU A 129 O HOH A 657 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 107.41 -43.45 REMARK 500 TYR A 83 131.74 84.46 REMARK 500 GLU A 87 80.07 -63.16 REMARK 500 LEU A 90 6.78 -65.10 REMARK 500 ILE A 122 94.70 39.38 REMARK 500 GLU A 152 -73.05 -10.39 REMARK 500 ARG A 175 -46.12 75.52 REMARK 500 ARG A 204 -9.80 83.27 REMARK 500 SER A 301 46.71 -148.09 REMARK 500 ASP A 302 56.38 -143.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 531 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 299 SG REMARK 620 2 CYS A 303 SG 110.9 REMARK 620 3 CYS A 311 SG 119.2 118.9 REMARK 620 4 CYS A 314 SG 93.6 100.7 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 531 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AC5 RELATED DB: PDB REMARK 900 MNK2 KINASE DOMAIN MUTANT D228G DBREF 2AC3 A 72 385 UNP Q9HBH9 MKNK2_HUMAN 25 338 SEQADV 2AC3 GLY A 70 UNP Q9HBH9 EXPRESSION TAG SEQADV 2AC3 SER A 71 UNP Q9HBH9 EXPRESSION TAG SEQRES 1 A 316 GLY SER THR ASP SER PHE SER GLY ARG PHE GLU ASP VAL SEQRES 2 A 316 TYR GLN LEU GLN GLU ASP VAL LEU GLY GLU GLY ALA HIS SEQRES 3 A 316 ALA ARG VAL GLN THR CYS ILE ASN LEU ILE THR SER GLN SEQRES 4 A 316 GLU TYR ALA VAL LYS ILE ILE GLU LYS GLN PRO GLY HIS SEQRES 5 A 316 ILE ARG SER ARG VAL PHE ARG GLU VAL GLU MET LEU TYR SEQRES 6 A 316 GLN CYS GLN GLY HIS ARG ASN VAL LEU GLU LEU ILE GLU SEQRES 7 A 316 PHE PHE GLU GLU GLU ASP ARG PHE TYR LEU VAL PHE GLU SEQRES 8 A 316 LYS MET ARG GLY GLY SER ILE LEU SER HIS ILE HIS LYS SEQRES 9 A 316 ARG ARG HIS PHE ASN GLU LEU GLU ALA SER VAL VAL VAL SEQRES 10 A 316 GLN ASP VAL ALA SER ALA LEU ASP PHE LEU HIS ASN LYS SEQRES 11 A 316 GLY ILE ALA HIS ARG ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 12 A 316 CYS GLU HIS PRO ASN GLN VAL SER PRO VAL LYS ILE CYS SEQRES 13 A 316 ASP PHE ASP LEU GLY SER GLY ILE LYS LEU ASN GLY ASP SEQRES 14 A 316 CYS SER PRO ILE SER THR PRO GLU LEU LEU THR PRO CYS SEQRES 15 A 316 GLY SER ALA GLU TYR MET ALA PRO GLU VAL VAL GLU ALA SEQRES 16 A 316 PHE SER GLU GLU ALA SER ILE TYR ASP LYS ARG CYS ASP SEQRES 17 A 316 LEU TRP SER LEU GLY VAL ILE LEU TYR ILE LEU LEU SER SEQRES 18 A 316 GLY TYR PRO PRO PHE VAL GLY ARG CYS GLY SER ASP CYS SEQRES 19 A 316 GLY TRP ASP ARG GLY GLU ALA CYS PRO ALA CYS GLN ASN SEQRES 20 A 316 MET LEU PHE GLU SER ILE GLN GLU GLY LYS TYR GLU PHE SEQRES 21 A 316 PRO ASP LYS ASP TRP ALA HIS ILE SER CYS ALA ALA LYS SEQRES 22 A 316 ASP LEU ILE SER LYS LEU LEU VAL ARG ASP ALA LYS GLN SEQRES 23 A 316 ARG LEU SER ALA ALA GLN VAL LEU GLN HIS PRO TRP VAL SEQRES 24 A 316 GLN GLY CYS ALA PRO GLU ASN THR LEU PRO THR PRO MET SEQRES 25 A 316 VAL LEU GLN ARG HET ZN A 531 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *161(H2 O) HELIX 1 1 ILE A 122 CYS A 136 1 15 HELIX 2 2 SER A 166 ARG A 175 1 10 HELIX 3 3 ASN A 178 LYS A 199 1 22 HELIX 4 4 LYS A 207 GLU A 209 5 3 HELIX 5 5 SER A 253 MET A 257 5 5 HELIX 6 6 ALA A 258 PHE A 265 1 8 HELIX 7 7 SER A 266 ASP A 273 1 8 HELIX 8 8 ARG A 275 GLY A 291 1 17 HELIX 9 9 CYS A 311 GLY A 325 1 15 HELIX 10 10 PRO A 330 ALA A 335 1 6 HELIX 11 11 SER A 338 LEU A 349 1 12 HELIX 12 12 SER A 358 HIS A 365 1 8 SHEET 1 A 5 GLN A 84 LEU A 85 0 SHEET 2 A 5 ALA A 96 ILE A 102 -1 O ILE A 102 N GLN A 84 SHEET 3 A 5 GLU A 109 GLU A 116 -1 O ILE A 114 N ARG A 97 SHEET 4 A 5 ARG A 154 GLU A 160 -1 O PHE A 159 N ALA A 111 SHEET 5 A 5 LEU A 145 GLU A 151 -1 N GLU A 147 O VAL A 158 SHEET 1 B 2 ILE A 211 CYS A 213 0 SHEET 2 B 2 VAL A 222 ILE A 224 -1 O LYS A 223 N LEU A 212 LINK SG CYS A 299 ZN ZN A 531 1555 1555 2.35 LINK SG CYS A 303 ZN ZN A 531 1555 1555 2.49 LINK SG CYS A 311 ZN ZN A 531 1555 1555 2.29 LINK SG CYS A 314 ZN ZN A 531 1555 1555 2.47 CISPEP 1 PRO A 119 GLY A 120 0 -9.78 CISPEP 2 SER A 220 PRO A 221 0 -0.87 SITE 1 AC1 4 CYS A 299 CYS A 303 CYS A 311 CYS A 314 CRYST1 104.502 104.502 72.351 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009569 0.005525 0.000000 0.00000 SCALE2 0.000000 0.011050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013822 0.00000