PDB Short entry for 2ACZ HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 19-JUL-05 2ACZ TITLE COMPLEX II (SUCCINATE DEHYDROGENASE) FROM E. COLI WITH ATPENIN A5 TITLE 2 INHIBITOR CO-CRYSTALLIZED AT THE UBIQUINONE BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.99.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN; COMPND 8 CHAIN: B; COMPND 9 EC: 1.3.99.1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: CYTOCHROME B-556; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR COMPND 18 PROTEIN; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DW35; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFAS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: DW35; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFAS; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: DW35; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PFAS; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 27 ORGANISM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: DW35; SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PFAS KEYWDS MEMBRANE PROTEIN, AEROBIC REPARATORY COMPLEX II, SQR, KEYWDS 2 SUCCINATE:UBIQUINONE OXIDOREDUCTASE, AA5, AT5, ATPENIN A5, SDH, KEYWDS 3 SUCCINATE DEHYDROGENASE, OXIDOREDUCTASE-ELECTRON TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.HORSEFIELD,V.YANKOVSKAYA,G.SEXTON,W.WHITTINGHAM,K.SHIOMI,S.OMURA, AUTHOR 2 B.BYRNE,G.CECCHINI,S.IWATA REVDAT 6 25-OCT-23 2ACZ 1 REMARK LINK REVDAT 5 13-JUL-11 2ACZ 1 VERSN REVDAT 4 24-FEB-09 2ACZ 1 VERSN REVDAT 3 04-APR-06 2ACZ 1 JRNL REVDAT 2 17-JAN-06 2ACZ 1 JRNL HETSYN REVDAT 1 03-JAN-06 2ACZ 0 JRNL AUTH R.HORSEFIELD,V.YANKOVSKAYA,G.SEXTON,W.WHITTINGHAM,K.SHIOMI, JRNL AUTH 2 S.OMURA,B.BYRNE,G.CECCHINI,S.IWATA JRNL TITL STRUCTURAL AND COMPUTATIONAL ANALYSIS OF THE QUINONE-BINDING JRNL TITL 2 SITE OF COMPLEX II (SUCCINATE-UBIQUINONE OXIDOREDUCTASE): A JRNL TITL 3 MECHANISM OF ELECTRON TRANSFER AND PROTON CONDUCTION DURING JRNL TITL 4 UBIQUINONE REDUCTION. JRNL REF J.BIOL.CHEM. V. 281 7309 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16407191 JRNL DOI 10.1074/JBC.M508173200 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 224 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.307 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.661 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.655 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ACZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34114 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.360 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1NEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, CACIUM CHLORIDE, PEG 400, PH REMARK 280 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 69.37950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.05627 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 173.95767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 69.37950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.05627 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 173.95767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 69.37950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.05627 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 173.95767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 69.37950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.05627 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 173.95767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 69.37950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.05627 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.95767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 69.37950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.05627 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 173.95767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.11255 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 347.91533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 80.11255 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 347.91533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 80.11255 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 347.91533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 80.11255 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 347.91533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 80.11255 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 347.91533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 80.11255 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 347.91533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 63630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 110430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -565.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 208.13850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 120.16882 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 240.33764 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 110 REMARK 475 ASP A 111 REMARK 475 GLY A 112 REMARK 475 ARG A 113 REMARK 475 ILE A 114 REMARK 475 TYR A 115 REMARK 475 GLN A 116 REMARK 475 SER A 563 REMARK 475 GLU A 564 REMARK 475 SER A 565 REMARK 475 MET A 566 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 117 N CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 41 OA3 CDN C 132 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 44 C HIS A 45 N 0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 278 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO A 546 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 CYS B 60 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 PRO B 85 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 CYS B 212 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 57.08 -108.73 REMARK 500 SER A 29 45.87 -84.38 REMARK 500 PRO A 41 -40.53 -24.80 REMARK 500 SER A 44 147.52 -35.29 REMARK 500 GLN A 50 -71.45 -119.40 REMARK 500 ALA A 56 83.89 -64.52 REMARK 500 GLU A 62 152.52 -48.79 REMARK 500 ASP A 77 47.16 81.19 REMARK 500 ILE A 79 -10.08 -140.28 REMARK 500 PRO A 105 40.60 -59.86 REMARK 500 PHE A 106 156.13 -48.51 REMARK 500 ASP A 110 -130.78 164.77 REMARK 500 ILE A 114 30.35 -151.16 REMARK 500 PRO A 118 -118.05 -44.46 REMARK 500 ALA A 131 -147.75 -137.07 REMARK 500 ARG A 133 -3.01 -140.16 REMARK 500 ALA A 137 73.90 -104.80 REMARK 500 ALA A 138 -136.03 69.20 REMARK 500 ASN A 156 25.37 -79.75 REMARK 500 HIS A 157 50.42 35.90 REMARK 500 LEU A 167 -71.16 -93.37 REMARK 500 VAL A 178 59.65 -116.89 REMARK 500 ALA A 201 49.18 -147.12 REMARK 500 ALA A 205 42.83 -177.57 REMARK 500 HIS A 216 -5.20 -59.49 REMARK 500 ASN A 218 84.57 -60.56 REMARK 500 PRO A 232 176.29 -52.96 REMARK 500 ASP A 235 34.15 16.62 REMARK 500 MET A 236 5.70 -57.41 REMARK 500 THR A 254 124.40 -24.05 REMARK 500 ARG A 271 75.11 -102.76 REMARK 500 PHE A 272 -13.47 -45.55 REMARK 500 PRO A 278 -63.28 -27.12 REMARK 500 LYS A 281 -138.89 35.77 REMARK 500 GLU A 296 -3.31 -58.53 REMARK 500 CYS A 303 152.31 -40.16 REMARK 500 LEU A 327 40.07 -152.24 REMARK 500 HIS A 339 45.67 27.25 REMARK 500 PRO A 348 93.59 -69.82 REMARK 500 HIS A 354 -96.20 -127.31 REMARK 500 MET A 357 -80.40 -52.80 REMARK 500 SER A 393 37.27 76.01 REMARK 500 ASN A 398 107.18 -160.78 REMARK 500 GLU A 425 -38.11 -39.51 REMARK 500 ALA A 428 160.22 -44.28 REMARK 500 ASP A 431 175.99 -53.60 REMARK 500 ARG A 446 -71.53 -57.43 REMARK 500 CYS A 466 -74.65 -48.70 REMARK 500 MET A 467 -29.25 -37.69 REMARK 500 SER A 472 -156.61 -65.06 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 55 SG REMARK 620 2 FES B 302 S1 128.0 REMARK 620 3 FES B 302 S2 99.5 106.5 REMARK 620 4 CYS B 60 SG 110.4 95.3 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD2 REMARK 620 2 FES B 302 S1 82.1 REMARK 620 3 FES B 302 S2 173.1 102.3 REMARK 620 4 ASP B 63 OD1 54.3 130.9 119.4 REMARK 620 5 CYS B 75 SG 97.9 124.7 84.2 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 149 SG REMARK 620 2 SF4 B 303 S1 48.0 REMARK 620 3 SF4 B 303 S3 107.3 103.4 REMARK 620 4 SF4 B 303 S4 53.9 101.1 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 152 SG REMARK 620 2 SF4 B 303 S1 118.7 REMARK 620 3 SF4 B 303 S2 122.6 108.9 REMARK 620 4 SF4 B 303 S3 97.5 103.0 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 SF4 B 303 S2 106.1 REMARK 620 3 SF4 B 303 S3 111.0 99.0 REMARK 620 4 SF4 B 303 S4 128.0 102.7 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 159 SG REMARK 620 2 F3S B 304 S2 114.3 REMARK 620 3 F3S B 304 S3 114.4 106.7 REMARK 620 4 F3S B 304 S4 110.6 115.5 93.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 206 SG REMARK 620 2 F3S B 304 S1 91.0 REMARK 620 3 F3S B 304 S2 98.9 80.6 REMARK 620 4 F3S B 304 S3 150.2 107.4 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 212 SG REMARK 620 2 F3S B 304 S1 131.6 REMARK 620 3 F3S B 304 S3 98.9 104.9 REMARK 620 4 F3S B 304 S4 110.5 110.2 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 216 SG REMARK 620 2 SF4 B 303 S1 50.3 REMARK 620 3 SF4 B 303 S2 112.7 107.4 REMARK 620 4 SF4 B 303 S4 52.1 102.2 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEB C 130 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 84 NE2 REMARK 620 2 HEB C 130 NA 82.0 REMARK 620 3 HEB C 130 NB 84.8 89.7 REMARK 620 4 HEB C 130 NC 96.8 177.3 92.6 REMARK 620 5 HEB C 130 ND 96.2 90.5 179.0 87.2 REMARK 620 6 HIS D 71 NE2 176.2 94.3 94.7 87.0 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAA A 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEB C 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AT5 C 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDN C 132 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NEK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEX II WITH UBIQUINONE BOUND REMARK 900 RELATED ID: 1NEN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COMPLEX II WITH DINITROPHENOL BOUND REMARK 900 RELATED ID: 2AD0 RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF COMPLEX II WITH CARBOXIN DOCKED USING PROTEIN- REMARK 900 LIGAND DOCKING DBREF 2ACZ A 1 588 UNP P10444 DHSA_ECOLI 1 588 DBREF 2ACZ B 1 238 UNP P07014 DHSB_ECOLI 1 238 DBREF 2ACZ C 1 129 UNP P69054 DHSC_ECOLI 1 129 DBREF 2ACZ D 1 115 UNP P10445 DHSD_ECOLI 1 115 SEQRES 1 A 588 MET LYS LEU PRO VAL ARG GLU PHE ASP ALA VAL VAL ILE SEQRES 2 A 588 GLY ALA GLY GLY ALA GLY MET ARG ALA ALA LEU GLN ILE SEQRES 3 A 588 SER GLN SER GLY GLN THR CYS ALA LEU LEU SER LYS VAL SEQRES 4 A 588 PHE PRO THR ARG SER HIS THR VAL SER ALA GLN GLY GLY SEQRES 5 A 588 ILE THR VAL ALA LEU GLY ASN THR HIS GLU ASP ASN TRP SEQRES 6 A 588 GLU TRP HIS MET TYR ASP THR VAL LYS GLY SER ASP TYR SEQRES 7 A 588 ILE GLY ASP GLN ASP ALA ILE GLU TYR MET CYS LYS THR SEQRES 8 A 588 GLY PRO GLU ALA ILE LEU GLU LEU GLU HIS MET GLY LEU SEQRES 9 A 588 PRO PHE SER ARG LEU ASP ASP GLY ARG ILE TYR GLN ARG SEQRES 10 A 588 PRO PHE GLY GLY GLN SER LYS ASN PHE GLY GLY GLU GLN SEQRES 11 A 588 ALA ALA ARG THR ALA ALA ALA ALA ASP ARG THR GLY HIS SEQRES 12 A 588 ALA LEU LEU HIS THR LEU TYR GLN GLN ASN LEU LYS ASN SEQRES 13 A 588 HIS THR THR ILE PHE SER GLU TRP TYR ALA LEU ASP LEU SEQRES 14 A 588 VAL LYS ASN GLN ASP GLY ALA VAL VAL GLY CYS THR ALA SEQRES 15 A 588 LEU CYS ILE GLU THR GLY GLU VAL VAL TYR PHE LYS ALA SEQRES 16 A 588 ARG ALA THR VAL LEU ALA THR GLY GLY ALA GLY ARG ILE SEQRES 17 A 588 TYR GLN SER THR THR ASN ALA HIS ILE ASN THR GLY ASP SEQRES 18 A 588 GLY VAL GLY MET ALA ILE ARG ALA GLY VAL PRO VAL GLN SEQRES 19 A 588 ASP MET GLU MET TRP GLN PHE HIS PRO THR GLY ILE ALA SEQRES 20 A 588 GLY ALA GLY VAL LEU VAL THR GLU GLY CYS ARG GLY GLU SEQRES 21 A 588 GLY GLY TYR LEU LEU ASN LYS HIS GLY GLU ARG PHE MET SEQRES 22 A 588 GLU ARG TYR ALA PRO ASN ALA LYS ASP LEU ALA GLY ARG SEQRES 23 A 588 ASP VAL VAL ALA ARG SER ILE MET ILE GLU ILE ARG GLU SEQRES 24 A 588 GLY ARG GLY CYS ASP GLY PRO TRP GLY PRO HIS ALA LYS SEQRES 25 A 588 LEU LYS LEU ASP HIS LEU GLY LYS GLU VAL LEU GLU SER SEQRES 26 A 588 ARG LEU PRO GLY ILE LEU GLU LEU SER ARG THR PHE ALA SEQRES 27 A 588 HIS VAL ASP PRO VAL LYS GLU PRO ILE PRO VAL ILE PRO SEQRES 28 A 588 THR CYS HIS TYR MET MET GLY GLY ILE PRO THR LYS VAL SEQRES 29 A 588 THR GLY GLN ALA LEU THR VAL ASN GLU LYS GLY GLU ASP SEQRES 30 A 588 VAL VAL VAL PRO GLY LEU PHE ALA VAL GLY GLU ILE ALA SEQRES 31 A 588 CYS VAL SER VAL HIS GLY ALA ASN ARG LEU GLY GLY ASN SEQRES 32 A 588 SER LEU LEU ASP LEU VAL VAL PHE GLY ARG ALA ALA GLY SEQRES 33 A 588 LEU HIS LEU GLN GLU SER ILE ALA GLU GLN GLY ALA LEU SEQRES 34 A 588 ARG ASP ALA SER GLU SER ASP VAL GLU ALA SER LEU ASP SEQRES 35 A 588 ARG LEU ASN ARG TRP ASN ASN ASN ARG ASN GLY GLU ASP SEQRES 36 A 588 PRO VAL ALA ILE ARG LYS ALA LEU GLN GLU CYS MET GLN SEQRES 37 A 588 HIS ASN PHE SER VAL PHE ARG GLU GLY ASP ALA MET ALA SEQRES 38 A 588 LYS GLY LEU GLU GLN LEU LYS VAL ILE ARG GLU ARG LEU SEQRES 39 A 588 LYS ASN ALA ARG LEU ASP ASP THR SER SER GLU PHE ASN SEQRES 40 A 588 THR GLN ARG VAL GLU CYS LEU GLU LEU ASP ASN LEU MET SEQRES 41 A 588 GLU THR ALA TYR ALA THR ALA VAL SER ALA ASN PHE ARG SEQRES 42 A 588 THR GLU SER ARG GLY ALA HIS SER ARG PHE ASP PHE PRO SEQRES 43 A 588 ASP ARG ASP ASP GLU ASN TRP LEU CYS HIS SER LEU TYR SEQRES 44 A 588 LEU PRO GLU SER GLU SER MET THR ARG ARG SER VAL ASN SEQRES 45 A 588 MET GLU PRO LYS LEU ARG PRO ALA PHE PRO PRO LYS ILE SEQRES 46 A 588 ARG THR TYR SEQRES 1 B 238 MET ARG LEU GLU PHE SER ILE TYR ARG TYR ASN PRO ASP SEQRES 2 B 238 VAL ASP ASP ALA PRO ARG MET GLN ASP TYR THR LEU GLU SEQRES 3 B 238 ALA ASP GLU GLY ARG ASP MET MET LEU LEU ASP ALA LEU SEQRES 4 B 238 ILE GLN LEU LYS GLU LYS ASP PRO SER LEU SER PHE ARG SEQRES 5 B 238 ARG SER CYS ARG GLU GLY VAL CYS GLY SER ASP GLY LEU SEQRES 6 B 238 ASN MET ASN GLY LYS ASN GLY LEU ALA CYS ILE THR PRO SEQRES 7 B 238 ILE SER ALA LEU ASN GLN PRO GLY LYS LYS ILE VAL ILE SEQRES 8 B 238 ARG PRO LEU PRO GLY LEU PRO VAL ILE ARG ASP LEU VAL SEQRES 9 B 238 VAL ASP MET GLY GLN PHE TYR ALA GLN TYR GLU LYS ILE SEQRES 10 B 238 LYS PRO TYR LEU LEU ASN ASN GLY GLN ASN PRO PRO ALA SEQRES 11 B 238 ARG GLU HIS LEU GLN MET PRO GLU GLN ARG GLU LYS LEU SEQRES 12 B 238 ASP GLY LEU TYR GLU CYS ILE LEU CYS ALA CYS CYS SER SEQRES 13 B 238 THR SER CYS PRO SER PHE TRP TRP ASN PRO ASP LYS PHE SEQRES 14 B 238 ILE GLY PRO ALA GLY LEU LEU ALA ALA TYR ARG PHE LEU SEQRES 15 B 238 ILE ASP SER ARG ASP THR GLU THR ASP SER ARG LEU ASP SEQRES 16 B 238 GLY LEU SER ASP ALA PHE SER VAL PHE ARG CYS HIS SER SEQRES 17 B 238 ILE MET ASN CYS VAL SER VAL CYS PRO LYS GLY LEU ASN SEQRES 18 B 238 PRO THR ARG ALA ILE GLY HIS ILE LYS SER MET LEU LEU SEQRES 19 B 238 GLN ARG ASN ALA SEQRES 1 C 129 MET ILE ARG ASN VAL LYS LYS GLN ARG PRO VAL ASN LEU SEQRES 2 C 129 ASP LEU GLN THR ILE ARG PHE PRO ILE THR ALA ILE ALA SEQRES 3 C 129 SER ILE LEU HIS ARG VAL SER GLY VAL ILE THR PHE VAL SEQRES 4 C 129 ALA VAL GLY ILE LEU LEU TRP LEU LEU GLY THR SER LEU SEQRES 5 C 129 SER SER PRO GLU GLY PHE GLU GLN ALA SER ALA ILE MET SEQRES 6 C 129 GLY SER PHE PHE VAL LYS PHE ILE MET TRP GLY ILE LEU SEQRES 7 C 129 THR ALA LEU ALA TYR HIS VAL VAL VAL GLY ILE ARG HIS SEQRES 8 C 129 MET MET MET ASP PHE GLY TYR LEU GLU GLU THR PHE GLU SEQRES 9 C 129 ALA GLY LYS ARG SER ALA LYS ILE SER PHE VAL ILE THR SEQRES 10 C 129 VAL VAL LEU SER LEU LEU ALA GLY VAL LEU VAL TRP SEQRES 1 D 115 MET VAL SER ASN ALA SER ALA LEU GLY ARG ASN GLY VAL SEQRES 2 D 115 HIS ASP PHE ILE LEU VAL ARG ALA THR ALA ILE VAL LEU SEQRES 3 D 115 THR LEU TYR ILE ILE TYR MET VAL GLY PHE PHE ALA THR SEQRES 4 D 115 SER GLY GLU LEU THR TYR GLU VAL TRP ILE GLY PHE PHE SEQRES 5 D 115 ALA SER ALA PHE THR LYS VAL PHE THR LEU LEU ALA LEU SEQRES 6 D 115 PHE SER ILE LEU ILE HIS ALA TRP ILE GLY MET TRP GLN SEQRES 7 D 115 VAL LEU THR ASP TYR VAL LYS PRO LEU ALA LEU ARG LEU SEQRES 8 D 115 MET LEU GLN LEU VAL ILE VAL VAL ALA LEU VAL VAL TYR SEQRES 9 D 115 VAL ILE TYR GLY PHE VAL VAL VAL TRP GLY VAL HET OAA A 589 9 HET FAD A 601 53 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET HEB C 130 43 HET AT5 C 131 23 HET CDN C 132 77 HETNAM OAA OXALOACETATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM HEB HEME B/C HETNAM AT5 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4- HETNAM 2 AT5 HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE HETNAM CDN CARDIOLIPIN HETSYN HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX HETSYN 2 HEB CONTAINING FE) HETSYN AT5 ATPENIN A5; AA5 FORMUL 5 OAA C4 H3 O5 1- FORMUL 6 FAD C27 H33 N9 O15 P2 FORMUL 7 FES FE2 S2 FORMUL 8 SF4 FE4 S4 FORMUL 9 F3S FE3 S4 FORMUL 10 HEB C34 H34 FE N4 O4 FORMUL 11 AT5 C15 H21 CL2 N O5 FORMUL 12 CDN C58 H120 O17 P2 HELIX 1 1 GLY A 16 SER A 29 1 14 HELIX 2 2 PHE A 40 ALA A 49 5 10 HELIX 3 3 ASN A 64 ASP A 77 1 14 HELIX 4 4 ASP A 81 HIS A 101 1 21 HELIX 5 5 ARG A 140 ASN A 156 1 17 HELIX 6 6 GLY A 222 ILE A 227 1 6 HELIX 7 7 GLU A 255 GLY A 261 1 7 HELIX 8 8 ARG A 271 ALA A 277 1 7 HELIX 9 9 ALA A 280 ALA A 284 5 5 HELIX 10 10 GLY A 285 GLU A 296 1 12 HELIX 11 11 GLY A 319 LEU A 327 1 9 HELIX 12 12 LEU A 327 ALA A 338 1 12 HELIX 13 13 GLY A 402 GLN A 426 1 25 HELIX 14 14 SER A 433 ASN A 450 1 18 HELIX 15 15 ASP A 455 PHE A 471 1 17 HELIX 16 16 GLU A 476 LEU A 494 1 19 HELIX 17 17 LYS A 495 ALA A 497 5 3 HELIX 18 18 ASN A 507 ARG A 533 1 27 HELIX 19 19 MET B 34 ASP B 46 1 13 HELIX 20 20 CYS B 75 THR B 77 5 3 HELIX 21 21 PRO B 78 ASN B 83 5 6 HELIX 22 22 MET B 107 ILE B 117 1 11 HELIX 23 23 MET B 136 GLU B 141 1 6 HELIX 24 24 LYS B 142 ASP B 144 5 3 HELIX 25 25 CYS B 155 SER B 158 5 4 HELIX 26 26 CYS B 159 ASN B 165 1 7 HELIX 27 27 GLY B 171 ILE B 183 1 13 HELIX 28 28 GLU B 189 GLY B 196 1 8 HELIX 29 29 MET B 210 CYS B 216 1 7 HELIX 30 30 ASN B 221 ASN B 237 1 17 HELIX 31 31 PRO C 21 SER C 53 1 33 HELIX 32 32 SER C 54 SER C 67 1 14 HELIX 33 33 SER C 67 PHE C 96 1 30 HELIX 34 34 THR C 102 TRP C 129 1 28 HELIX 35 35 ASN D 11 ALA D 38 1 28 HELIX 36 36 THR D 44 PHE D 52 1 9 HELIX 37 37 SER D 54 VAL D 84 1 31 HELIX 38 38 PRO D 86 GLY D 114 1 29 SHEET 1 A 6 THR A 159 SER A 162 0 SHEET 2 A 6 ALA A 34 SER A 37 1 N LEU A 35 O PHE A 161 SHEET 3 A 6 VAL A 11 ILE A 13 1 N VAL A 12 O ALA A 34 SHEET 4 A 6 THR A 198 LEU A 200 1 O VAL A 199 N VAL A 11 SHEET 5 A 6 ASP A 377 ALA A 385 1 O GLY A 382 N THR A 198 SHEET 6 A 6 GLN A 367 VAL A 371 -1 N ALA A 368 O VAL A 380 SHEET 1 B 3 ILE A 53 THR A 54 0 SHEET 2 B 3 ALA A 132 ALA A 135 -1 O ALA A 135 N ILE A 53 SHEET 3 B 3 SER A 123 ASN A 125 -1 N LYS A 124 O THR A 134 SHEET 1 C 3 TRP A 164 LYS A 171 0 SHEET 2 C 3 VAL A 177 CYS A 184 -1 O LEU A 183 N TYR A 165 SHEET 3 C 3 VAL A 190 PHE A 193 -1 O PHE A 193 N CYS A 180 SHEET 1 D 4 TRP A 239 ILE A 246 0 SHEET 2 D 4 ILE A 347 MET A 356 -1 O HIS A 354 N GLN A 240 SHEET 3 D 4 ALA A 311 LYS A 314 -1 N ALA A 311 O VAL A 349 SHEET 4 D 4 TYR A 263 LEU A 265 -1 N TYR A 263 O LYS A 314 SHEET 1 E 2 ILE A 360 PRO A 361 0 SHEET 2 E 2 ALA A 390 CYS A 391 1 O CYS A 391 N ILE A 360 SHEET 1 F 2 PHE A 474 ARG A 475 0 SHEET 2 F 2 SER A 541 ARG A 542 1 O SER A 541 N ARG A 475 SHEET 1 G 5 ARG B 19 LEU B 25 0 SHEET 2 G 5 LEU B 3 ARG B 9 -1 N PHE B 5 O TYR B 23 SHEET 3 G 5 ILE B 89 ARG B 92 1 O ILE B 89 N SER B 6 SHEET 4 G 5 GLY B 64 MET B 67 -1 N ASN B 66 O ARG B 92 SHEET 5 G 5 LYS B 70 LEU B 73 -1 O GLY B 72 N LEU B 65 SHEET 1 H 2 VAL B 99 ARG B 101 0 SHEET 2 H 2 VAL B 104 VAL B 105 -1 O VAL B 104 N ILE B 100 LINK NE2 HIS A 45 C8M FAD A 601 1555 1555 1.38 LINK SG CYS B 55 FE2 FES B 302 1555 1555 2.33 LINK SG CYS B 60 FE2 FES B 302 1555 1555 2.54 LINK OD2 ASP B 63 FE1 FES B 302 1555 1555 2.22 LINK OD1 ASP B 63 FE1 FES B 302 1555 1555 2.52 LINK SG CYS B 75 FE1 FES B 302 1555 1555 2.58 LINK SG CYS B 149 FE2 SF4 B 303 1555 1555 4.88 LINK SG CYS B 152 FE4 SF4 B 303 1555 1555 2.42 LINK SG CYS B 155 FE1 SF4 B 303 1555 1555 2.45 LINK SG CYS B 159 FE4 F3S B 304 1555 1555 2.34 LINK SG CYS B 206 FE1 F3S B 304 1555 1555 2.59 LINK SG CYS B 212 FE3 F3S B 304 1555 1555 2.38 LINK SG CYS B 216 FE3 SF4 B 303 1555 1555 4.97 LINK NE2 HIS C 84 FE HEB C 130 1555 1555 2.22 LINK FE HEB C 130 NE2 HIS D 71 1555 1555 2.24 SITE 1 AC1 12 GLY A 51 PHE A 126 HIS A 242 LEU A 252 SITE 2 AC1 12 THR A 254 GLU A 255 ARG A 286 HIS A 354 SITE 3 AC1 12 ARG A 399 GLY A 401 GLY A 402 FAD A 601 SITE 1 AC2 32 GLY A 14 ALA A 15 GLY A 16 GLY A 17 SITE 2 AC2 32 ALA A 18 SER A 37 LYS A 38 VAL A 39 SITE 3 AC2 32 SER A 44 HIS A 45 THR A 46 SER A 48 SITE 4 AC2 32 ALA A 49 GLN A 50 GLY A 51 GLY A 52 SITE 5 AC2 32 TRP A 164 TYR A 165 ALA A 166 ALA A 201 SITE 6 AC2 32 THR A 202 GLY A 203 ASN A 214 ASP A 221 SITE 7 AC2 32 TYR A 355 GLU A 388 ARG A 399 GLY A 402 SITE 8 AC2 32 SER A 404 LEU A 405 LEU A 408 OAA A 589 SITE 1 AC3 9 SER B 54 CYS B 55 ARG B 56 GLY B 58 SITE 2 AC3 9 VAL B 59 CYS B 60 GLY B 61 ASP B 63 SITE 3 AC3 9 CYS B 75 SITE 1 AC4 8 CYS B 149 ILE B 150 CYS B 152 ALA B 153 SITE 2 AC4 8 CYS B 154 CYS B 155 CYS B 216 PRO B 217 SITE 1 AC5 10 CYS B 159 PRO B 172 CYS B 206 HIS B 207 SITE 2 AC5 10 SER B 208 ILE B 209 MET B 210 ASN B 211 SITE 3 AC5 10 CYS B 212 THR B 223 SITE 1 AC6 17 HIS B 207 HIS C 30 ARG C 31 THR C 37 SITE 2 AC6 17 PHE C 38 HIS C 84 VAL C 85 GLY C 88 SITE 3 AC6 17 CDN C 132 ARG D 20 ALA D 23 THR D 27 SITE 4 AC6 17 ILE D 68 HIS D 71 GLY D 75 MET D 76 SITE 5 AC6 17 GLN D 78 SITE 1 AC7 12 PRO B 160 TRP B 164 HIS B 207 ILE B 209 SITE 2 AC7 12 LEU C 15 PHE C 20 ALA C 24 SER C 27 SITE 3 AC7 12 ILE C 28 ARG C 31 ASP D 82 TYR D 83 SITE 1 AC8 18 LEU C 44 SER C 51 ALA C 61 SER C 62 SITE 2 AC8 18 MET C 65 MET C 74 LEU C 78 VAL C 115 SITE 3 AC8 18 LEU C 123 ALA C 124 VAL C 126 LEU C 127 SITE 4 AC8 18 TRP C 129 HEB C 130 ILE D 30 GLY D 41 SITE 5 AC8 18 LEU D 43 ILE D 68 CRYST1 138.759 138.759 521.873 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007207 0.004161 0.000000 0.00000 SCALE2 0.000000 0.008322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001916 0.00000