PDB Short entry for 2ADB HEADER RNA BINDING PROTEIN/RNA 20-JUL-05 2ADB TITLE SOLUTION STRUCTURE OF POLYPYRIMIDINE TRACT BINDING PROTEIN RBD2 TITLE 2 COMPLEXED WITH CUCUCU RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*CP*UP*CP*UP*CP*U)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: RBD2; COMPND 9 SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, HNRNP I, 57 COMPND 10 KDA RNA-BINDING PROTEIN PPTB-1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: PTB-1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+RIL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS RBD, RRM, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING,P.WENTER, AUTHOR 2 L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN REVDAT 3 09-MAR-22 2ADB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ADB 1 VERSN REVDAT 1 04-OCT-05 2ADB 0 JRNL AUTH F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, JRNL AUTH 2 P.WENTER,L.REYMOND,B.AMIR-AHMADY,S.PITSCH,D.L.BLACK, JRNL AUTH 3 F.H.T.ALLAIN JRNL TITL STRUCTURE OF PTB BOUND TO RNA: SPECIFIC BINDING AND JRNL TITL 2 IMPLICATIONS FOR SPLICING REGULATION JRNL REF SCIENCE V. 309 2054 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 16179478 JRNL DOI 10.1126/SCIENCE.1114066 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, AMBER 7 REMARK 3 AUTHORS : BRUKER (XWINNMR), CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ADB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.50 REMARK 210 IONIC STRENGTH : 30MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PTB RBD2 15N, 13C; 1.5MM REMARK 210 CUCUCU-RNA; 20MM PHOSPHATE REMARK 210 BUFFER; 10MM NACL; 1.5MM PTB REMARK 210 RBD2 15N; 1.5MM CUCUCU-RNA; 20MM REMARK 210 PHOSPHATE BUFFER; 10MM NACL; REMARK 210 1.5MM PTB RBD2 15N; 1.5MM CUCUCU- REMARK 210 RNA; 20MM PHOSPHATE BUFFER; 10MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.0, DYANA 3.02 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 SER A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 LEU A 164 REMARK 465 VAL A 165 REMARK 465 PRO A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 HIS A 170 REMARK 465 MET A 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 C B 301 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 U B 304 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 ARG A 273 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 C B 303 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 C B 299 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 U B 302 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 4 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 5 U B 300 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 C B 301 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 5 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 5 C B 303 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 5 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 U B 304 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 6 U B 304 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 6 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 U B 302 C5' - C4' - O4' ANGL. DEV. = 5.5 DEGREES REMARK 500 7 U B 302 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 7 C B 303 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 7 U B 304 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 7 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 8 U B 302 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 8 ARG A 273 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 C B 299 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 9 U B 302 C5' - C4' - O4' ANGL. DEV. = 6.3 DEGREES REMARK 500 9 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 9 C B 303 C5' - C4' - O4' ANGL. DEV. = 6.3 DEGREES REMARK 500 10 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 10 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 11 C B 299 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 11 C B 301 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 11 U B 302 C5' - C4' - O4' ANGL. DEV. = 5.8 DEGREES REMARK 500 11 U B 302 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 11 U B 304 O4' - C1' - N1 ANGL. DEV. = 7.3 DEGREES REMARK 500 11 U B 304 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 11 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 12 C B 301 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 12 U B 302 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 12 U B 304 O4' - C1' - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 12 U B 304 N3 - C2 - O2 ANGL. DEV. = -5.2 DEGREES REMARK 500 13 C B 299 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 13 U B 302 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 82 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 190 14.96 -66.19 REMARK 500 1 PHE A 192 -33.97 -141.36 REMARK 500 1 PRO A 194 79.46 -64.10 REMARK 500 1 VAL A 195 -40.59 -142.36 REMARK 500 1 THR A 196 -62.25 -17.48 REMARK 500 1 THR A 209 75.33 -111.80 REMARK 500 1 LEU A 211 -64.42 -121.66 REMARK 500 1 ASN A 219 -73.39 55.36 REMARK 500 1 LEU A 239 -71.78 -31.11 REMARK 500 1 ASN A 248 25.70 43.87 REMARK 500 1 SER A 262 86.41 -152.31 REMARK 500 1 LYS A 266 -67.47 -124.19 REMARK 500 1 TYR A 267 130.66 179.87 REMARK 500 1 ASN A 268 8.19 -61.90 REMARK 500 1 ASP A 270 -6.44 -146.77 REMARK 500 1 LYS A 271 -44.87 -131.83 REMARK 500 1 SER A 272 136.17 -170.97 REMARK 500 1 ASP A 279 -5.50 -166.04 REMARK 500 1 LEU A 280 163.26 12.93 REMARK 500 1 PRO A 287 174.36 -54.65 REMARK 500 1 GLN A 291 -22.68 -148.66 REMARK 500 1 THR A 292 -71.30 -98.62 REMARK 500 1 ALA A 296 -52.82 -141.04 REMARK 500 1 PHE A 297 -8.73 47.41 REMARK 500 2 ALA A 176 -62.07 61.58 REMARK 500 2 GLN A 180 0.18 80.94 REMARK 500 2 GLU A 189 -171.06 -68.37 REMARK 500 2 PHE A 192 -42.03 -132.32 REMARK 500 2 PRO A 194 71.88 -55.34 REMARK 500 2 VAL A 195 -34.44 -149.19 REMARK 500 2 LEU A 211 -56.33 -124.68 REMARK 500 2 LYS A 218 -153.21 -77.59 REMARK 500 2 ASN A 220 -16.93 -146.31 REMARK 500 2 LEU A 239 -75.96 -21.40 REMARK 500 2 ASN A 245 -161.49 -79.20 REMARK 500 2 TYR A 247 -82.82 -146.51 REMARK 500 2 ALA A 249 15.44 58.37 REMARK 500 2 LYS A 266 -68.58 -109.54 REMARK 500 2 TYR A 267 119.02 -166.96 REMARK 500 2 ASN A 268 1.14 -40.51 REMARK 500 2 ASP A 270 -17.87 -157.40 REMARK 500 2 ASP A 279 -37.33 164.26 REMARK 500 2 LEU A 280 121.83 106.28 REMARK 500 2 SER A 282 -6.37 71.96 REMARK 500 2 LEU A 289 4.44 -65.07 REMARK 500 2 GLN A 291 -45.99 -146.93 REMARK 500 2 THR A 292 -70.67 -78.15 REMARK 500 2 ALA A 294 -29.14 -39.28 REMARK 500 2 ALA A 296 -39.10 -142.15 REMARK 500 2 PHE A 297 -3.31 50.03 REMARK 500 REMARK 500 THIS ENTRY HAS 497 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 184 ARG A 185 1 132.44 REMARK 500 VAL A 195 THR A 196 1 148.64 REMARK 500 LEU A 253 ARG A 254 1 146.22 REMARK 500 THR A 276 ARG A 277 1 145.81 REMARK 500 ASP A 279 LEU A 280 1 -101.24 REMARK 500 GLY A 179 GLN A 180 2 142.42 REMARK 500 LEU A 191 PHE A 192 2 -142.85 REMARK 500 LEU A 253 ARG A 254 2 141.00 REMARK 500 GLY A 179 GLN A 180 3 148.10 REMARK 500 PRO A 194 VAL A 195 3 -149.15 REMARK 500 GLY A 179 GLN A 180 4 144.75 REMARK 500 ASN A 190 LEU A 191 4 -149.94 REMARK 500 VAL A 195 THR A 196 4 147.61 REMARK 500 LEU A 253 ARG A 254 4 144.40 REMARK 500 LYS A 266 TYR A 267 4 148.91 REMARK 500 SER A 272 ARG A 273 4 134.40 REMARK 500 GLY A 179 GLN A 180 5 143.32 REMARK 500 VAL A 183 LEU A 184 5 -149.69 REMARK 500 VAL A 188 GLU A 189 5 145.44 REMARK 500 ASN A 190 LEU A 191 5 -143.60 REMARK 500 PRO A 194 VAL A 195 5 -130.69 REMARK 500 GLN A 223 ALA A 224 5 147.57 REMARK 500 LYS A 238 LEU A 239 5 145.36 REMARK 500 VAL A 265 LYS A 266 5 149.29 REMARK 500 GLY A 179 GLN A 180 6 145.29 REMARK 500 GLN A 180 SER A 181 6 149.73 REMARK 500 VAL A 195 THR A 196 6 128.64 REMARK 500 THR A 209 VAL A 210 6 -149.48 REMARK 500 GLN A 223 ALA A 224 6 144.76 REMARK 500 LEU A 253 ARG A 254 6 135.54 REMARK 500 ASP A 279 LEU A 280 6 -114.03 REMARK 500 LYS A 238 LEU A 239 7 149.61 REMARK 500 ASP A 279 LEU A 280 7 -98.10 REMARK 500 LEU A 253 ARG A 254 8 148.47 REMARK 500 LYS A 271 SER A 272 8 -144.41 REMARK 500 ASP A 279 LEU A 280 8 -105.89 REMARK 500 GLY A 179 GLN A 180 9 148.90 REMARK 500 LEU A 184 ARG A 185 9 139.29 REMARK 500 VAL A 195 THR A 196 9 146.46 REMARK 500 LEU A 253 ARG A 254 9 143.69 REMARK 500 ASP A 279 LEU A 280 9 -112.98 REMARK 500 VAL A 195 THR A 196 10 139.86 REMARK 500 ASP A 270 LYS A 271 10 -148.08 REMARK 500 GLY A 179 GLN A 180 11 141.23 REMARK 500 GLN A 180 SER A 181 11 142.06 REMARK 500 LEU A 184 ARG A 185 11 142.09 REMARK 500 VAL A 195 THR A 196 11 145.91 REMARK 500 LEU A 253 ARG A 254 11 149.39 REMARK 500 ASP A 279 LEU A 280 11 -108.51 REMARK 500 SER A 272 ARG A 273 12 143.77 REMARK 500 REMARK 500 THIS ENTRY HAS 94 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 U B 300 0.17 SIDE CHAIN REMARK 500 1 C B 301 0.15 SIDE CHAIN REMARK 500 1 TYR A 228 0.10 SIDE CHAIN REMARK 500 2 U B 300 0.14 SIDE CHAIN REMARK 500 2 C B 303 0.06 SIDE CHAIN REMARK 500 2 TYR A 228 0.07 SIDE CHAIN REMARK 500 3 C B 299 0.06 SIDE CHAIN REMARK 500 3 U B 300 0.17 SIDE CHAIN REMARK 500 3 C B 301 0.08 SIDE CHAIN REMARK 500 3 C B 303 0.09 SIDE CHAIN REMARK 500 3 TYR A 228 0.09 SIDE CHAIN REMARK 500 4 U B 300 0.08 SIDE CHAIN REMARK 500 4 C B 303 0.07 SIDE CHAIN REMARK 500 4 TYR A 228 0.08 SIDE CHAIN REMARK 500 5 C B 301 0.07 SIDE CHAIN REMARK 500 5 C B 303 0.06 SIDE CHAIN REMARK 500 5 TYR A 228 0.07 SIDE CHAIN REMARK 500 6 C B 301 0.12 SIDE CHAIN REMARK 500 6 U B 304 0.08 SIDE CHAIN REMARK 500 6 TYR A 228 0.07 SIDE CHAIN REMARK 500 7 U B 300 0.15 SIDE CHAIN REMARK 500 7 C B 303 0.07 SIDE CHAIN REMARK 500 7 TYR A 228 0.10 SIDE CHAIN REMARK 500 8 U B 300 0.17 SIDE CHAIN REMARK 500 8 C B 301 0.11 SIDE CHAIN REMARK 500 8 C B 303 0.11 SIDE CHAIN REMARK 500 8 TYR A 228 0.09 SIDE CHAIN REMARK 500 9 U B 300 0.17 SIDE CHAIN REMARK 500 9 C B 301 0.10 SIDE CHAIN REMARK 500 9 C B 303 0.06 SIDE CHAIN REMARK 500 10 U B 300 0.24 SIDE CHAIN REMARK 500 10 C B 301 0.06 SIDE CHAIN REMARK 500 10 ARG A 185 0.08 SIDE CHAIN REMARK 500 10 TYR A 228 0.08 SIDE CHAIN REMARK 500 11 U B 300 0.20 SIDE CHAIN REMARK 500 11 C B 301 0.09 SIDE CHAIN REMARK 500 11 U B 304 0.07 SIDE CHAIN REMARK 500 11 TYR A 228 0.10 SIDE CHAIN REMARK 500 12 C B 301 0.10 SIDE CHAIN REMARK 500 12 ARG A 185 0.08 SIDE CHAIN REMARK 500 12 TYR A 228 0.09 SIDE CHAIN REMARK 500 13 C B 301 0.07 SIDE CHAIN REMARK 500 13 TYR A 228 0.09 SIDE CHAIN REMARK 500 14 U B 300 0.21 SIDE CHAIN REMARK 500 14 TYR A 228 0.10 SIDE CHAIN REMARK 500 15 C B 301 0.06 SIDE CHAIN REMARK 500 15 TYR A 228 0.07 SIDE CHAIN REMARK 500 16 U B 300 0.17 SIDE CHAIN REMARK 500 16 ARG A 185 0.08 SIDE CHAIN REMARK 500 16 TYR A 228 0.07 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 63 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AD9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN RBD1 COMPLEXED WITH CUCUCU RNA REMARK 900 RELATED ID: 2ADC RELATED DB: PDB REMARK 900 THE SAME PROTEIN RBD34 COMPLEXED WITH CUCUCU RNA DBREF 2ADB A 172 298 UNP P26599 PTBP1_HUMAN 172 298 DBREF 2ADB B 299 304 PDB 2ADB 2ADB 299 304 SEQADV 2ADB MET A 151 UNP P26599 EXPRESSION TAG SEQADV 2ADB GLY A 152 UNP P26599 EXPRESSION TAG SEQADV 2ADB SER A 153 UNP P26599 EXPRESSION TAG SEQADV 2ADB SER A 154 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 155 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 156 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 157 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 158 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 159 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 160 UNP P26599 EXPRESSION TAG SEQADV 2ADB SER A 161 UNP P26599 EXPRESSION TAG SEQADV 2ADB SER A 162 UNP P26599 EXPRESSION TAG SEQADV 2ADB GLY A 163 UNP P26599 EXPRESSION TAG SEQADV 2ADB LEU A 164 UNP P26599 EXPRESSION TAG SEQADV 2ADB VAL A 165 UNP P26599 EXPRESSION TAG SEQADV 2ADB PRO A 166 UNP P26599 EXPRESSION TAG SEQADV 2ADB ARG A 167 UNP P26599 EXPRESSION TAG SEQADV 2ADB GLY A 168 UNP P26599 EXPRESSION TAG SEQADV 2ADB SER A 169 UNP P26599 EXPRESSION TAG SEQADV 2ADB HIS A 170 UNP P26599 EXPRESSION TAG SEQADV 2ADB MET A 171 UNP P26599 EXPRESSION TAG SEQRES 1 B 6 C U C U C U SEQRES 1 A 148 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 148 LEU VAL PRO ARG GLY SER HIS MET ASP ALA GLY MET ALA SEQRES 3 A 148 MET ALA GLY GLN SER PRO VAL LEU ARG ILE ILE VAL GLU SEQRES 4 A 148 ASN LEU PHE TYR PRO VAL THR LEU ASP VAL LEU HIS GLN SEQRES 5 A 148 ILE PHE SER LYS PHE GLY THR VAL LEU LYS ILE ILE THR SEQRES 6 A 148 PHE THR LYS ASN ASN GLN PHE GLN ALA LEU LEU GLN TYR SEQRES 7 A 148 ALA ASP PRO VAL SER ALA GLN HIS ALA LYS LEU SER LEU SEQRES 8 A 148 ASP GLY GLN ASN ILE TYR ASN ALA CYS CYS THR LEU ARG SEQRES 9 A 148 ILE ASP PHE SER LYS LEU THR SER LEU ASN VAL LYS TYR SEQRES 10 A 148 ASN ASN ASP LYS SER ARG ASP TYR THR ARG PRO ASP LEU SEQRES 11 A 148 PRO SER GLY ASP SER GLN PRO SER LEU ASP GLN THR MET SEQRES 12 A 148 ALA ALA ALA PHE GLY HELIX 1 1 VAL A 195 SER A 205 1 11 HELIX 2 2 ASP A 230 GLY A 243 1 14 SHEET 1 A 5 ARG A 254 PHE A 257 0 SHEET 2 A 5 VAL A 183 ILE A 187 -1 N ARG A 185 O ASP A 256 SHEET 3 A 5 GLN A 221 TYR A 228 -1 O LEU A 226 N LEU A 184 SHEET 4 A 5 VAL A 210 LYS A 218 -1 N LEU A 211 O GLN A 227 SHEET 5 A 5 SER A 272 ASP A 274 -1 O ARG A 273 N ILE A 213 CISPEP 1 ALA A 295 ALA A 296 12 10.33 CISPEP 2 MET A 175 ALA A 176 15 -0.33 CISPEP 3 SER A 258 LYS A 259 18 -0.49 CISPEP 4 THR A 252 LEU A 253 19 -22.66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000