PDB Short entry for 2AFD HEADER LIGAND BINDING PROTEIN 25-JUL-05 2AFD TITLE SOLUTION STRUCTURE OF ASL1650, AN ACYL CARRIER PROTEIN FROM ANABAENA TITLE 2 SP. PCC 7120 WITH A VARIANT PHOSPHOPANTETHEINYLATION-SITE SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ASL1650; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP.; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL (STRATAGENE); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 OTHER_DETAILS: SYNONYM NOSTOC SP. PCC 7120 KEYWDS TWISTED ANTIPARALLEL HELICAL BUNDLE; ACYL CARRIER PROTEIN FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, JCSG, LIGAND BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.JOHNSON,W.PETI,T.HERRMANN,I.A.WILSON,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-OCT-21 2AFD 1 REMARK SEQADV REVDAT 4 13-JUL-11 2AFD 1 VERSN REVDAT 3 24-FEB-09 2AFD 1 VERSN REVDAT 2 09-MAY-06 2AFD 1 JRNL REVDAT 1 16-AUG-05 2AFD 0 JRNL AUTH M.A.JOHNSON,W.PETI,T.HERRMANN,I.A.WILSON,K.WUTHRICH JRNL TITL SOLUTION STRUCTURE OF ASL1650, AN ACYL CARRIER PROTEIN FROM JRNL TITL 2 ANABAENA SP. PCC 7120 WITH A VARIANT JRNL TITL 3 PHOSPHOPANTETHEINYLATION-SITE SEQUENCE JRNL REF PROTEIN SCI. V. 15 1030 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16597827 JRNL DOI 10.1110/PS.051964606 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ATNOS 1, OPALP 1 REMARK 3 AUTHORS : HERRMANN T, GUNTERT P, WUTHRICH K (ATNOS), REMARK 3 LUGINBUHL P, GUNTERT P, BILLETER M, WUTHRICH K REMARK 3 (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATED NOESY PEAK PICKING, AUTOMATED REMARK 3 NOE ASSIGNMENT REMARK 4 REMARK 4 2AFD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033827. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 250 MM NACL; 250 MM NACL; 250 MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM ASL1650 U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER, PH 6.0, 250MM REMARK 210 NACL, 2MM NAN3; 2MM ASL1650 U- REMARK 210 15N; 20MM PHOSPHATE BUFFER, PH REMARK 210 6.0, 250MM NACL, 2MM NAN3, 90% REMARK 210 H2O, 10% D2O; 2MM ASL1650; 20MM REMARK 210 PHOSPHATE BUFFER, PH 6.0, 250MM REMARK 210 NACL, 2MM NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CANDID 1, DYANA 6.01 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 10 TYR A 43 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 82.82 -156.01 REMARK 500 1 MET A 4 41.03 178.89 REMARK 500 1 LYS A 5 48.04 -165.31 REMARK 500 1 THR A 6 146.28 59.25 REMARK 500 1 ILE A 7 -122.48 -133.62 REMARK 500 1 ASN A 46 -98.51 -155.64 REMARK 500 1 SER A 47 -69.35 -134.68 REMARK 500 1 LYS A 63 -153.98 -131.68 REMARK 500 1 ASN A 72 -37.29 -131.96 REMARK 500 1 PRO A 74 43.11 -83.11 REMARK 500 1 TYR A 87 -57.69 -127.06 REMARK 500 2 MET A 4 42.27 -101.94 REMARK 500 2 LYS A 5 28.84 -153.21 REMARK 500 2 THR A 6 167.43 61.48 REMARK 500 2 ILE A 7 -124.15 -134.29 REMARK 500 2 TYR A 43 -159.01 -84.69 REMARK 500 2 ASN A 46 -79.79 -158.02 REMARK 500 2 SER A 47 -68.96 -152.89 REMARK 500 2 LYS A 63 -160.29 -128.26 REMARK 500 2 PRO A 74 42.69 -80.11 REMARK 500 2 TYR A 87 -66.52 -122.79 REMARK 500 3 HIS A 3 -44.22 -155.76 REMARK 500 3 THR A 6 153.69 -43.36 REMARK 500 3 ILE A 7 -111.73 -136.79 REMARK 500 3 VAL A 29 -169.23 -119.53 REMARK 500 3 TYR A 43 -166.60 -79.28 REMARK 500 3 ASN A 46 -95.07 -116.31 REMARK 500 3 SER A 47 -61.15 -139.46 REMARK 500 3 LYS A 63 -152.06 -130.34 REMARK 500 3 ASN A 72 -35.89 -134.70 REMARK 500 3 PRO A 74 44.03 -79.29 REMARK 500 3 TYR A 87 -62.31 -130.26 REMARK 500 4 HIS A 3 175.45 66.44 REMARK 500 4 ILE A 7 -123.15 -119.59 REMARK 500 4 ASN A 46 -104.67 -134.92 REMARK 500 4 SER A 47 -75.53 -115.26 REMARK 500 4 ASN A 72 -45.48 -148.65 REMARK 500 5 MET A 4 95.27 154.05 REMARK 500 5 LYS A 5 141.27 159.49 REMARK 500 5 ILE A 7 -124.97 -132.53 REMARK 500 5 PRO A 9 93.29 -67.37 REMARK 500 5 MET A 36 -4.08 -59.47 REMARK 500 5 LEU A 45 32.11 -73.13 REMARK 500 5 ASN A 46 -63.82 -24.79 REMARK 500 5 SER A 47 -61.19 -153.52 REMARK 500 5 LYS A 63 -153.09 -132.05 REMARK 500 5 ASN A 72 -32.10 -142.87 REMARK 500 5 PRO A 74 42.66 -84.30 REMARK 500 6 MET A 4 39.33 -161.40 REMARK 500 6 ILE A 7 -115.41 -118.26 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1 SER A 2 10 -147.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 43 0.07 SIDE CHAIN REMARK 500 1 TYR A 73 0.07 SIDE CHAIN REMARK 500 2 TYR A 73 0.08 SIDE CHAIN REMARK 500 3 ARG A 82 0.10 SIDE CHAIN REMARK 500 4 TYR A 73 0.08 SIDE CHAIN REMARK 500 5 TYR A 73 0.08 SIDE CHAIN REMARK 500 5 ARG A 82 0.12 SIDE CHAIN REMARK 500 7 TYR A 73 0.08 SIDE CHAIN REMARK 500 7 TYR A 87 0.08 SIDE CHAIN REMARK 500 9 TYR A 73 0.09 SIDE CHAIN REMARK 500 11 ARG A 56 0.08 SIDE CHAIN REMARK 500 12 TYR A 73 0.08 SIDE CHAIN REMARK 500 13 TYR A 73 0.08 SIDE CHAIN REMARK 500 14 ARG A 82 0.09 SIDE CHAIN REMARK 500 15 TYR A 73 0.10 SIDE CHAIN REMARK 500 16 TYR A 73 0.09 SIDE CHAIN REMARK 500 18 ARG A 56 0.11 SIDE CHAIN REMARK 500 18 TYR A 73 0.09 SIDE CHAIN REMARK 500 18 ARG A 82 0.15 SIDE CHAIN REMARK 500 19 TYR A 73 0.09 SIDE CHAIN REMARK 500 20 TYR A 73 0.10 SIDE CHAIN REMARK 500 20 ARG A 82 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AFE RELATED DB: PDB REMARK 900 REPRESENTATIVE CONFORMER REMARK 900 RELATED ID: 354432 RELATED DB: TARGETDB DBREF 2AFD A 4 88 UNP Q8YWG3 Q8YWG3_ANASP 1 85 SEQADV 2AFD GLY A 1 UNP Q8YWG3 CLONING ARTIFACT SEQADV 2AFD SER A 2 UNP Q8YWG3 CLONING ARTIFACT SEQADV 2AFD HIS A 3 UNP Q8YWG3 CLONING ARTIFACT SEQADV 2AFD ALA A 10 UNP Q8YWG3 CYS 7 ENGINEERED MUTATION SEQRES 1 A 88 GLY SER HIS MET LYS THR ILE GLN PRO ALA SER VAL GLU SEQRES 2 A 88 ASP ILE GLN SER TRP LEU ILE ASP GLN PHE ALA GLN GLN SEQRES 3 A 88 LEU ASP VAL ASP PRO ASP ASP ILE ASP MET GLU GLU SER SEQRES 4 A 88 PHE ASP ASN TYR ASP LEU ASN SER SER LYS ALA LEU ILE SEQRES 5 A 88 LEU LEU GLY ARG LEU GLU LYS TRP LEU GLY LYS GLU LEU SEQRES 6 A 88 ASN PRO VAL LEU ILE PHE ASN TYR PRO THR ILE ALA GLN SEQRES 7 A 88 LEU ALA LYS ARG LEU GLY GLU LEU TYR LEU HELIX 1 1 SER A 11 ASP A 28 1 18 HELIX 2 2 ASP A 30 ILE A 34 5 5 HELIX 3 3 SER A 39 TYR A 43 5 5 HELIX 4 4 SER A 48 LEU A 61 1 14 HELIX 5 5 ASN A 66 ILE A 70 5 5 HELIX 6 6 THR A 75 TYR A 87 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000