PDB Short entry for 2AJO HEADER MEMBRANE PROTEIN 02-AUG-05 2AJO TITLE NMR STRUCTURE OF THE IN-PLANE MEMBRANE ANCHOR DOMAIN [1-28] OF THE TITLE 2 MONOTOPIC NONSTRUCTURAL PROTEIN 5A (NS5A) FROM THE BOVINE VIRAL TITLE 3 DIARRHEA VIRUS (BVDV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSTRUCTURAL PROTEIN 5A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BVDV NS5A; COMPND 5 SYNONYM: NS5A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 IS NATURALLY FOUND IN BOVINE VIRAL DIARRHEA VIRUS 1, STRAIN CP7 KEYWDS IN-PLANE MEMBRANE ANCHOR DOMAIN, AMPHIPATHIC ALPHA-HELIX, MEMBRANE KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR AUTHOR N.SAPAY,R.MONTSERRET,C.CHIPOT,V.BRASS,D.MORADPOUR,G.DELEAGE,F.PENIN REVDAT 4 09-MAR-22 2AJO 1 REMARK REVDAT 3 24-FEB-09 2AJO 1 VERSN REVDAT 2 31-OCT-06 2AJO 1 JRNL REVDAT 1 23-AUG-05 2AJO 0 JRNL AUTH N.SAPAY,R.MONTSERRET,C.CHIPOT,V.BRASS,D.MORADPOUR,G.DELEAGE, JRNL AUTH 2 F.PENIN JRNL TITL NMR STRUCTURE AND MOLECULAR DYNAMICS OF THE IN-PLANE JRNL TITL 2 MEMBRANE ANCHOR OF NONSTRUCTURAL PROTEIN 5A FROM BOVINE JRNL TITL 3 VIRAL DIARRHEA VIRUS. JRNL REF BIOCHEMISTRY V. 45 2221 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16475810 JRNL DOI 10.1021/BI0517685 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.0.6, XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : BRUNGER, A.T. (XPLOR-NIH), BRUNGER, A.T. (XPLOR REMARK 3 -NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033973. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 313 REMARK 210 PH : 4.5; 4.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM BVDV NS5A[1-28], 100 MM SDS REMARK 210 -D25 IN H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 1H 13C HSQC; REMARK 210 DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, SPARKY 3.110, PROCHECK REMARK 210 -NMR 3.5.4 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING AND ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST PAIR-FITTED RMSD REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 5 -10.92 72.77 REMARK 500 LEU A 20 51.03 -97.16 REMARK 500 LYS A 21 -55.66 -139.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 18 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6757 RELATED DB: BMRB REMARK 900 NMR DATA RELATED TO BVDV NS5A[1-28]STRUCTURE REMARK 900 RELATED ID: 2AJM RELATED DB: PDB REMARK 900 ENSEMBLE OF 9 STRUCTURES, SAMPLE IN 100 MM SDS REMARK 900 RELATED ID: 2AJJ RELATED DB: PDB REMARK 900 ENSEMBLE OF 31 STRUCTURES, SAMPLE IN 50% TFE REMARK 900 RELATED ID: 2AJN RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE FROM AN ENSEMBLE OF 31 STRUCTURES REMARK 900 (SAMPLE IN 50% TFE) DBREF 2AJO A 1 28 UNP Q96662 POLG_BVDVC 2693 2720 SEQRES 1 A 28 SER GLY ASN TYR VAL LEU ASP LEU ILE TYR SER LEU HIS SEQRES 2 A 28 LYS GLN ILE ASN ARG GLY LEU LYS LYS ILE VAL LEU GLY SEQRES 3 A 28 TRP ALA HELIX 1 1 LEU A 6 ILE A 23 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000