PDB Short entry for 2ALR HEADER OXIDOREDUCTASE 06-SEP-94 2ALR TITLE ALDEHYDE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALR1; COMPND 5 EC: 1.1.1.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: KIDNEY; SOURCE 6 TISSUE: MEDULLA, CORTEX KEYWDS OXIDOREDUCTASE, TIM-BARREL EXPDTA X-RAY DIFFRACTION AUTHOR O.EL-KABBANI REVDAT 3 14-FEB-24 2ALR 1 REMARK REVDAT 2 24-FEB-09 2ALR 1 VERSN REVDAT 1 20-JUN-96 2ALR 0 SPRSDE 20-JUN-96 2ALR 1ALR JRNL AUTH O.EL-KABBANI,N.C.GREEN,G.LIN,M.CARSON,S.V.NARAYANA, JRNL AUTH 2 K.M.MOORE,T.G.FLYNN,L.J.DELUCAS JRNL TITL STRUCTURES OF HUMAN AND PORCINE ALDEHYDE REDUCTASE: AN JRNL TITL 2 ENZYME IMPLICATED IN DIABETIC COMPLICATIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 50 859 1994 JRNL REFN ISSN 0907-4449 JRNL PMID 15299353 JRNL DOI 10.1107/S0907444994005275 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.EL-KABBANI,G.LIN,S.V.L.NARAYANA,K.M.MOORE,N.C.GREEN, REMARK 1 AUTH 2 T.G.FLYNN,L.J.DELUCAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY STRUCTURE DETERMINATION OF REMARK 1 TITL 2 PORCINE ALDEHYDE REDUCTASE FROM TWO CRYSTAL FORMS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 490 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9538 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.006 ; 0.020 ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.100 ; 3.000 ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 17.800; 15.000; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.004 ; 0.020 ; NULL REMARK 3 GENERAL PLANES (A) : 0.008 ; 0.020 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ALR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-92 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10591 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 0.980 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 214 REMARK 465 SER A 215 REMARK 465 ASP A 216 REMARK 465 ARG A 217 REMARK 465 ALA A 218 REMARK 465 TRP A 219 REMARK 465 ARG A 220 REMARK 465 ASP A 221 REMARK 465 PRO A 222 REMARK 465 ASP A 223 REMARK 465 GLU A 224 REMARK 465 PRO A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 65 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 SER A 78 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 -1.97 -58.44 REMARK 500 TRP A 21 -63.68 -25.93 REMARK 500 PRO A 65 -87.29 -26.20 REMARK 500 GLU A 229 37.71 -96.08 REMARK 500 ASP A 277 35.29 -89.82 REMARK 500 PHE A 320 32.61 -93.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ALR A 1 324 UNP P14550 AK1A1_HUMAN 1 324 SEQRES 1 A 324 ALA ALA SER CYS VAL LEU LEU HIS THR GLY GLN LYS MET SEQRES 2 A 324 PRO LEU ILE GLY LEU GLY THR TRP LYS SER GLU PRO GLY SEQRES 3 A 324 GLN VAL LYS ALA ALA VAL LYS TYR ALA LEU SER VAL GLY SEQRES 4 A 324 TYR ARG HIS ILE ASP CYS ALA ALA ILE TYR GLY ASN GLU SEQRES 5 A 324 PRO GLU ILE GLY GLU ALA LEU LYS GLU ASP VAL GLY PRO SEQRES 6 A 324 GLY LYS ALA VAL PRO ARG GLU GLU LEU PHE VAL THR SER SEQRES 7 A 324 LYS LEU TRP ASN THR LYS HIS HIS PRO GLU ASP VAL GLU SEQRES 8 A 324 PRO ALA LEU ARG LYS THR LEU ALA ASP LEU GLN LEU GLU SEQRES 9 A 324 TYR LEU ASP LEU TYR LEU MET HIS TRP PRO TYR ALA PHE SEQRES 10 A 324 GLU ARG GLY ASP ASN PRO PHE PRO LYS ASN ALA ASP GLY SEQRES 11 A 324 THR ILE CYS TYR ASP SER THR HIS TYR LYS GLU THR TRP SEQRES 12 A 324 LYS ALA LEU GLU ALA LEU VAL ALA LYS GLY LEU VAL GLN SEQRES 13 A 324 ALA LEU GLY LEU SER ASN PHE ASN SER ARG GLN ILE ASP SEQRES 14 A 324 ASP ILE LEU SER VAL ALA SER VAL ARG PRO ALA VAL LEU SEQRES 15 A 324 GLN VAL GLU CYS HIS PRO TYR LEU ALA GLN ASN GLU LEU SEQRES 16 A 324 ILE ALA HIS CYS GLN ALA ARG GLY LEU GLU VAL THR ALA SEQRES 17 A 324 TYR SER PRO LEU GLY SER SER ASP ARG ALA TRP ARG ASP SEQRES 18 A 324 PRO ASP GLU PRO VAL LEU LEU GLU GLU PRO VAL VAL LEU SEQRES 19 A 324 ALA LEU ALA GLU LYS TYR GLY ARG SER PRO ALA GLN ILE SEQRES 20 A 324 LEU LEU ARG TRP GLN VAL GLN ARG LYS VAL ILE CYS ILE SEQRES 21 A 324 PRO LYS SER ILE THR PRO SER ARG ILE LEU GLN ASN ILE SEQRES 22 A 324 LYS VAL PHE ASP PHE THR PHE SER PRO GLU GLU MET LYS SEQRES 23 A 324 GLN LEU ASN ALA LEU ASN LYS ASN TRP ARG TYR ILE VAL SEQRES 24 A 324 PRO MET LEU THR VAL ASP GLY LYS ARG VAL PRO ARG ASP SEQRES 25 A 324 ALA GLY HIS PRO LEU TYR PRO PHE ASN ASP PRO TYR HELIX 1 1 PRO A 25 VAL A 38 1 14 HELIX 2 2 ALA A 47 TYR A 49 5 3 HELIX 3 3 GLU A 52 ASP A 62 1 11 HELIX 4 4 ARG A 71 GLU A 73 5 3 HELIX 5 5 ASN A 82 LYS A 84 5 3 HELIX 6 6 PRO A 87 LEU A 101 1 15 HELIX 7 7 TYR A 139 LYS A 152 1 14 HELIX 8 8 SER A 165 LEU A 172 1 8 HELIX 9 9 ASN A 193 ARG A 202 1 10 HELIX 10 10 PRO A 231 TYR A 240 1 10 HELIX 11 11 PRO A 244 GLN A 254 1 11 HELIX 12 12 PRO A 266 ILE A 273 1 8 HELIX 13 13 PRO A 282 LEU A 291 1 10 SHEET 1 A 2 CYS A 4 LEU A 6 0 SHEET 2 A 2 LYS A 12 PRO A 14 -1 N MET A 13 O VAL A 5 SHEET 1 B 8 ILE A 16 GLY A 19 0 SHEET 2 B 8 ILE A 258 LYS A 262 1 N CYS A 259 O GLY A 17 SHEET 3 B 8 GLU A 205 TYR A 209 1 N ALA A 208 O ILE A 258 SHEET 4 B 8 VAL A 181 GLU A 185 1 N LEU A 182 O GLU A 205 SHEET 5 B 8 ALA A 157 SER A 161 1 N LEU A 160 O VAL A 181 SHEET 6 B 8 LEU A 108 MET A 111 1 N TYR A 109 O ALA A 157 SHEET 7 B 8 PHE A 75 LEU A 80 1 N SER A 78 O LEU A 108 SHEET 8 B 8 HIS A 42 ASP A 44 1 N ILE A 43 O PHE A 75 SHEET 1 C 2 MET A 301 VAL A 304 0 SHEET 2 C 2 LYS A 307 PRO A 310 -1 N VAL A 309 O LEU A 302 CRYST1 82.600 60.000 66.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015106 0.00000