PDB Short entry for 2AM2 HEADER LIGASE 08-AUG-05 2AM2 TITLE SP PROTEIN LIGAND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYLALANINE-D-GLUTAMYL-LYSINE-D-ALANYL-D- COMPND 3 ALANINE LIGASE, MURF PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SP PROTEIN; COMPND 6 EC: 6.3.2.10; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 GENE: MURF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.LONGENECKER,G.F.STAMPER,P.J.HAJDUK,E.H.FRY,C.G.JAKOB,J.E.HARLAN, AUTHOR 2 R.EDALJI,D.M.BARTLEY,K.A.WALTER,L.R.SOLOMON REVDAT 6 15-NOV-23 2AM2 1 REMARK REVDAT 5 23-AUG-23 2AM2 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2AM2 1 REMARK REVDAT 3 13-JUL-11 2AM2 1 VERSN REVDAT 2 24-FEB-09 2AM2 1 VERSN REVDAT 1 24-JAN-06 2AM2 0 JRNL AUTH K.L.LONGENECKER,G.F.STAMPER,P.J.HAJDUK,E.H.FRY,C.G.JAKOB, JRNL AUTH 2 J.E.HARLAN,R.EDALJI,D.M.BARTLEY,K.A.WALTER,L.R.SOLOMON, JRNL AUTH 3 T.F.HOLZMAN,Y.G.GU,C.G.LERNER,B.A.BEUTEL,V.S.STOLL JRNL TITL STRUCTURE OF MURF FROM STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 CO-CRYSTALLIZED WITH A SMALL MOLECULE INHIBITOR EXHIBITS JRNL TITL 3 INTERDOMAIN CLOSURE JRNL REF PROTEIN SCI. V. 14 3039 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 16322581 JRNL DOI 10.1110/PS.051604805 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 16516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.76000 REMARK 3 B22 (A**2) : 2.76000 REMARK 3 B33 (A**2) : -5.52000 REMARK 3 B12 (A**2) : -2.12500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIG.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2AM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.30333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.60667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.45500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 135.75833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.15167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.30333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 108.60667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 135.75833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.45500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.15167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 ILE A 229 CD1 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LEU A 304 CG CD1 CD2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 426 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 126 O GLU A 288 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 44 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 68.82 -163.60 REMARK 500 ALA A 14 92.52 -28.80 REMARK 500 LYS A 15 -8.68 -58.53 REMARK 500 ASN A 16 -92.21 -92.21 REMARK 500 ASP A 17 -82.68 -166.35 REMARK 500 ILE A 18 -27.52 106.14 REMARK 500 GLU A 22 -32.01 -38.94 REMARK 500 ASP A 23 58.81 74.32 REMARK 500 LYS A 28 166.80 179.02 REMARK 500 SER A 33 -34.06 -36.90 REMARK 500 ASP A 53 -2.21 -55.13 REMARK 500 ALA A 63 135.45 -31.39 REMARK 500 SER A 73 120.95 46.66 REMARK 500 SER A 108 -74.93 -55.26 REMARK 500 ASN A 109 -105.00 99.43 REMARK 500 GLU A 138 -8.55 -57.21 REMARK 500 ASP A 162 -31.66 -130.57 REMARK 500 LEU A 164 104.52 -49.83 REMARK 500 LEU A 183 159.89 56.08 REMARK 500 VAL A 184 92.61 173.18 REMARK 500 ALA A 187 -96.47 -79.36 REMARK 500 LEU A 189 71.39 1.94 REMARK 500 PHE A 191 -39.49 58.57 REMARK 500 ASP A 252 42.63 -143.86 REMARK 500 ASN A 259 5.82 -49.34 REMARK 500 ALA A 264 174.70 -58.65 REMARK 500 PRO A 268 38.74 -71.74 REMARK 500 LEU A 302 -101.53 -126.79 REMARK 500 GLU A 303 70.89 151.01 REMARK 500 LEU A 304 130.12 -34.94 REMARK 500 THR A 305 56.57 -96.33 REMARK 500 ARG A 306 104.68 21.29 REMARK 500 ASN A 307 -94.53 33.60 REMARK 500 ARG A 308 158.56 110.93 REMARK 500 ALA A 315 94.27 -54.66 REMARK 500 ASN A 316 2.88 166.04 REMARK 500 ILE A 320 -172.77 -50.75 REMARK 500 LEU A 321 59.72 174.82 REMARK 500 PHE A 339 -14.65 -43.61 REMARK 500 PRO A 343 -179.47 -57.00 REMARK 500 GLU A 346 -101.42 49.08 REMARK 500 GLU A 359 12.54 59.95 REMARK 500 GLU A 388 -63.54 -126.24 REMARK 500 LYS A 411 108.87 -170.46 REMARK 500 ASP A 416 85.90 -173.76 REMARK 500 GLN A 417 47.01 -73.17 REMARK 500 VAL A 422 -74.89 -40.49 REMARK 500 SER A 440 136.61 -34.51 REMARK 500 GLU A 450 -73.37 -57.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2LG A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AM1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SP PROTEIN LIGAND 1 DBREF 2AM2 A 1 454 GB 15459176 AAL00318 1 454 SEQADV 2AM2 MSE A 1 GB 15459176 MET 1 MODIFIED RESIDUE SEQADV 2AM2 MSE A 117 GB 15459176 MET 117 MODIFIED RESIDUE SEQADV 2AM2 MSE A 148 GB 15459176 MET 148 MODIFIED RESIDUE SEQADV 2AM2 MSE A 159 GB 15459176 MET 159 MODIFIED RESIDUE SEQADV 2AM2 MSE A 203 GB 15459176 MET 203 MODIFIED RESIDUE SEQADV 2AM2 MSE A 209 GB 15459176 MET 209 MODIFIED RESIDUE SEQADV 2AM2 MSE A 279 GB 15459176 MET 279 MODIFIED RESIDUE SEQADV 2AM2 MSE A 332 GB 15459176 MET 332 MODIFIED RESIDUE SEQADV 2AM2 MSE A 357 GB 15459176 MET 357 MODIFIED RESIDUE SEQADV 2AM2 MSE A 371 GB 15459176 MET 371 MODIFIED RESIDUE SEQADV 2AM2 MSE A 400 GB 15459176 MET 400 MODIFIED RESIDUE SEQADV 2AM2 MSE A 443 GB 15459176 MET 443 MODIFIED RESIDUE SEQRES 1 A 454 MSE LYS LEU THR ILE HIS GLU ILE ALA GLN VAL VAL GLY SEQRES 2 A 454 ALA LYS ASN ASP ILE SER ILE PHE GLU ASP THR GLN LEU SEQRES 3 A 454 GLU LYS ALA GLU PHE ASP SER ARG LEU ILE GLY THR GLY SEQRES 4 A 454 ASP LEU PHE VAL PRO LEU LYS GLY ALA ARG ASP GLY HIS SEQRES 5 A 454 ASP PHE ILE GLU THR ALA PHE GLU ASN GLY ALA ALA VAL SEQRES 6 A 454 THR LEU SER GLU LYS GLU VAL SER ASN HIS PRO TYR ILE SEQRES 7 A 454 LEU VAL ASP ASP VAL LEU THR ALA PHE GLN SER LEU ALA SEQRES 8 A 454 SER TYR TYR LEU GLU LYS THR THR VAL ASP VAL PHE ALA SEQRES 9 A 454 VAL THR GLY SER ASN GLY LYS THR THR THR LYS ASP MSE SEQRES 10 A 454 LEU ALA HIS LEU LEU SER THR ARG TYR LYS THR TYR LYS SEQRES 11 A 454 THR GLN GLY ASN TYR ASN ASN GLU ILE GLY LEU PRO TYR SEQRES 12 A 454 THR VAL LEU HIS MSE PRO GLU GLY THR GLU LYS LEU VAL SEQRES 13 A 454 LEU GLU MSE GLY GLN ASP HIS LEU GLY ASP ILE HIS LEU SEQRES 14 A 454 LEU SER GLU LEU ALA ARG PRO LYS THR ALA ILE VAL THR SEQRES 15 A 454 LEU VAL GLY GLU ALA HIS LEU ALA PHE PHE LYS ASP ARG SEQRES 16 A 454 SER GLU ILE ALA LYS GLY LYS MSE GLN ILE ALA ASP GLY SEQRES 17 A 454 MSE ALA SER GLY SER LEU LEU LEU ALA PRO ALA ASP PRO SEQRES 18 A 454 ILE VAL GLU ASP TYR LEU PRO ILE ASP LYS LYS VAL VAL SEQRES 19 A 454 ARG PHE GLY GLN GLY ALA GLU LEU GLU ILE THR ASP LEU SEQRES 20 A 454 VAL GLU ARG LYS ASP SER LEU THR PHE LYS ALA ASN PHE SEQRES 21 A 454 LEU GLU GLN ALA LEU ASP LEU PRO VAL THR GLY LYS TYR SEQRES 22 A 454 ASN ALA THR ASN ALA MSE ILE ALA SER TYR VAL ALA LEU SEQRES 23 A 454 GLN GLU GLY VAL SER GLU GLU GLN ILE ARG LEU ALA PHE SEQRES 24 A 454 GLN HIS LEU GLU LEU THR ARG ASN ARG THR GLU TRP LYS SEQRES 25 A 454 LYS ALA ALA ASN GLY ALA ASP ILE LEU SER ASP VAL TYR SEQRES 26 A 454 ASN ALA ASN PRO THR ALA MSE LYS LEU ILE LEU GLU THR SEQRES 27 A 454 PHE SER ALA ILE PRO ALA ASN GLU GLY GLY LYS LYS ILE SEQRES 28 A 454 ALA VAL LEU ALA ASP MSE LYS GLU LEU GLY ASP GLN SER SEQRES 29 A 454 VAL GLN LEU HIS ASN GLN MSE ILE LEU SER LEU SER PRO SEQRES 30 A 454 ASP VAL LEU ASP ILE VAL ILE PHE TYR GLY GLU ASP ILE SEQRES 31 A 454 ALA GLN LEU ALA GLN LEU ALA SER GLN MSE PHE PRO ILE SEQRES 32 A 454 GLY HIS VAL TYR TYR PHE LYS LYS THR GLU ASP GLN ASP SEQRES 33 A 454 GLN PHE GLU ASP LEU VAL LYS GLN VAL LYS GLU SER LEU SEQRES 34 A 454 GLY ALA HIS ASP GLN ILE LEU LEU LYS GLY SER ASN SER SEQRES 35 A 454 MSE ASN LEU ALA LYS LEU VAL GLU SER LEU GLU ASN MODRES 2AM2 MSE A 1 MET SELENOMETHIONINE MODRES 2AM2 MSE A 117 MET SELENOMETHIONINE MODRES 2AM2 MSE A 148 MET SELENOMETHIONINE MODRES 2AM2 MSE A 159 MET SELENOMETHIONINE MODRES 2AM2 MSE A 203 MET SELENOMETHIONINE MODRES 2AM2 MSE A 209 MET SELENOMETHIONINE MODRES 2AM2 MSE A 279 MET SELENOMETHIONINE MODRES 2AM2 MSE A 332 MET SELENOMETHIONINE MODRES 2AM2 MSE A 357 MET SELENOMETHIONINE MODRES 2AM2 MSE A 371 MET SELENOMETHIONINE MODRES 2AM2 MSE A 400 MET SELENOMETHIONINE MODRES 2AM2 MSE A 443 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 117 8 HET MSE A 148 8 HET MSE A 159 8 HET MSE A 203 8 HET MSE A 209 8 HET MSE A 279 8 HET MSE A 332 8 HET MSE A 357 8 HET MSE A 371 8 HET MSE A 400 8 HET MSE A 443 8 HET 2LG A1000 28 HETNAM MSE SELENOMETHIONINE HETNAM 2LG 2-CHLORO-N-(3-CYANO-5,6-DIHYDRO-4H- HETNAM 2 2LG CYCLOPENTA[B]THIOPHEN-2-YL)-5-DIETHYLSULFAMOYL- HETNAM 3 2LG BENZAMIDE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 2LG C19 H20 CL N3 O3 S2 FORMUL 3 HOH *137(H2 O) HELIX 1 1 THR A 4 GLY A 13 1 10 HELIX 2 2 ASP A 32 ILE A 36 5 5 HELIX 3 3 ASP A 50 ASP A 53 5 4 HELIX 4 4 PHE A 54 ASN A 61 1 8 HELIX 5 5 ASP A 82 THR A 99 1 18 HELIX 6 6 THR A 113 THR A 124 1 12 HELIX 7 7 ILE A 139 HIS A 147 1 9 HELIX 8 8 GLY A 165 ARG A 175 1 11 HELIX 9 9 ASP A 194 MSE A 203 1 10 HELIX 10 10 GLN A 204 ASP A 207 5 4 HELIX 11 11 ASP A 220 LEU A 227 5 8 HELIX 12 12 GLY A 271 GLU A 288 1 18 HELIX 13 13 SER A 291 HIS A 301 1 11 HELIX 14 14 ASN A 328 SER A 340 1 13 HELIX 15 15 GLN A 363 GLN A 370 1 8 HELIX 16 16 MSE A 371 LEU A 375 5 5 HELIX 17 17 ILE A 390 PHE A 401 1 12 HELIX 18 18 GLN A 417 LEU A 429 1 13 HELIX 19 19 SER A 442 ASN A 454 1 13 SHEET 1 A 4 ALA A 29 GLU A 30 0 SHEET 2 A 4 LEU A 41 PHE A 42 1 O LEU A 41 N GLU A 30 SHEET 3 A 4 VAL A 65 SER A 68 1 O LEU A 67 N PHE A 42 SHEET 4 A 4 TYR A 77 LEU A 79 1 O ILE A 78 N THR A 66 SHEET 1 B 6 THR A 128 LYS A 130 0 SHEET 2 B 6 LYS A 154 GLU A 158 1 O LYS A 154 N TYR A 129 SHEET 3 B 6 ASP A 101 THR A 106 1 N PHE A 103 O LEU A 157 SHEET 4 B 6 THR A 178 VAL A 181 1 O THR A 178 N ALA A 104 SHEET 5 B 6 LEU A 214 PRO A 218 1 O LEU A 216 N ALA A 179 SHEET 6 B 6 LYS A 232 PHE A 236 1 O LYS A 232 N LEU A 215 SHEET 1 C 3 ILE A 244 GLU A 249 0 SHEET 2 C 3 LEU A 254 ALA A 258 -1 O LYS A 257 N ASP A 246 SHEET 3 C 3 LEU A 265 LEU A 267 -1 O LEU A 267 N LEU A 254 SHEET 1 D 4 VAL A 406 PHE A 409 0 SHEET 2 D 4 VAL A 383 TYR A 386 1 N PHE A 385 O TYR A 407 SHEET 3 D 4 LYS A 349 ALA A 355 1 N LEU A 354 O TYR A 386 SHEET 4 D 4 ASP A 433 LYS A 438 1 O LEU A 436 N VAL A 353 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASP A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N LEU A 118 1555 1555 1.33 LINK C HIS A 147 N MSE A 148 1555 1555 1.32 LINK C MSE A 148 N PRO A 149 1555 1555 1.34 LINK C GLU A 158 N MSE A 159 1555 1555 1.32 LINK C MSE A 159 N GLY A 160 1555 1555 1.33 LINK C LYS A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N GLN A 204 1555 1555 1.32 LINK C GLY A 208 N MSE A 209 1555 1555 1.32 LINK C MSE A 209 N ALA A 210 1555 1555 1.34 LINK C ALA A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N ILE A 280 1555 1555 1.34 LINK C ALA A 331 N MSE A 332 1555 1555 1.33 LINK C MSE A 332 N LYS A 333 1555 1555 1.33 LINK C ASP A 356 N MSE A 357 1555 1555 1.33 LINK C MSE A 357 N LYS A 358 1555 1555 1.32 LINK C GLN A 370 N MSE A 371 1555 1555 1.33 LINK C MSE A 371 N ILE A 372 1555 1555 1.32 LINK C GLN A 399 N MSE A 400 1555 1555 1.33 LINK C MSE A 400 N PHE A 401 1555 1555 1.33 LINK C SER A 442 N MSE A 443 1555 1555 1.33 LINK C MSE A 443 N ASN A 444 1555 1555 1.33 SITE 1 AC1 12 PHE A 31 ASP A 32 ARG A 34 ALA A 48 SITE 2 AC1 12 ARG A 49 ASN A 134 TYR A 135 ASN A 137 SITE 3 AC1 12 ASN A 326 ASN A 328 THR A 330 LEU A 367 CRYST1 116.624 116.624 162.910 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008575 0.004951 0.000000 0.00000 SCALE2 0.000000 0.009901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006138 0.00000 HETATM 1 N MSE A 1 13.374 25.751 44.142 1.00 74.50 N HETATM 2 CA MSE A 1 14.525 24.954 44.645 1.00 74.25 C HETATM 3 C MSE A 1 14.233 23.478 44.471 1.00 84.15 C HETATM 4 O MSE A 1 13.596 23.061 43.504 1.00 86.22 O HETATM 5 CB MSE A 1 14.773 25.213 46.134 1.00 81.71 C HETATM 6 CG MSE A 1 14.762 26.670 46.553 1.00 83.46 C HETATM 7 SE MSE A 1 15.496 26.926 48.339 1.00 86.15 SE HETATM 8 CE MSE A 1 14.092 26.140 49.416 1.00 81.81 C