PDB Short entry for 2AP8 HEADER ANTIBIOTIC 15-AUG-05 2AP8 TITLE SOLUTION STRUCTURE OF BOMBININ H4 IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOMBININ H4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BOMBINA VARIEGATA; SOURCE 4 ORGANISM_TAXID: 8348; SOURCE 5 OTHER_DETAILS: SOLID-PHASE PEPTIDE SYNTHESIS. THE SEQUENCE OF THE SOURCE 6 PEPTIDE IS NATURALLY FOUND IN BOMBINA VARIEGATA KEYWDS ALPHA-HELIX, DPC MICELLE, D-ILE, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.ZANGGER,A.JILEK,L.KHATAI REVDAT 4 14-JUN-23 2AP8 1 SOURCE JRNL DBREF REVDAT 3 26-FEB-20 2AP8 1 REMARK LINK REVDAT 2 24-FEB-09 2AP8 1 VERSN REVDAT 1 01-AUG-06 2AP8 0 JRNL AUTH K.ZANGGER,R.GOSSLER,L.KHATAI,K.LOHNER,A.JILEK JRNL TITL STRUCTURES OF THE GLYCINE-RICH DIASTEREOMERIC PEPTIDES JRNL TITL 2 BOMBININ H2 AND H4. JRNL REF TOXICON V. 52 246 2008 JRNL REFN ISSN 0041-0101 JRNL PMID 18586045 JRNL DOI 10.1016/J.TOXICON.2008.05.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : A.BRUNGER ET AL. (CNS), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AP8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50MM KPI REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MG BOMBININ H4, 100MM DPC, 50MM REMARK 210 KPI, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CONTAINS 100MM DODECYLPHOSPHOCHOLINE-D38 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 DIL A 2 -114.73 -64.29 REMARK 500 2 DIL A 2 -104.26 -45.61 REMARK 500 3 DIL A 2 -116.82 -66.53 REMARK 500 3 LYS A 19 67.13 -25.97 REMARK 500 4 DIL A 2 10.09 -76.11 REMARK 500 6 DIL A 2 -124.96 -91.61 REMARK 500 7 DIL A 2 -25.85 -90.49 REMARK 500 8 DIL A 2 -29.33 -90.95 REMARK 500 9 DIL A 2 -120.44 -64.98 REMARK 500 10 DIL A 2 -113.42 -61.12 REMARK 500 11 LYS A 19 67.91 -25.80 REMARK 500 12 DIL A 2 -17.43 -58.45 REMARK 500 13 DIL A 2 14.11 -91.47 REMARK 500 16 DIL A 2 -119.72 -67.00 REMARK 500 18 DIL A 2 30.48 -89.69 REMARK 500 20 DIL A 2 -104.22 -45.14 REMARK 500 20 LYS A 19 65.09 -26.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6775 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS OF BOMBININ H4 REMARK 900 RELATED ID: 2AP7 RELATED DB: PDB REMARK 900 BOMBININ H2 DBREF 2AP8 A 1 20 PDB 2AP8 2AP8 1 20 SEQRES 1 A 20 ILE DIL GLY PRO VAL LEU GLY LEU VAL GLY SER ALA LEU SEQRES 2 A 20 GLY GLY LEU LEU LYS LYS ILE MODRES 2AP8 DIL A 2 ILE D-ISOLEUCINE HET DIL A 2 19 HETNAM DIL D-ISOLEUCINE FORMUL 1 DIL C6 H13 N O2 HELIX 1 1 GLY A 3 LYS A 19 1 17 LINK C ILE A 1 N DIL A 2 1555 1555 1.33 LINK C DIL A 2 N GLY A 3 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000