PDB Short entry for 2AQQ HEADER OXIDOREDUCTASE 18-AUG-05 2AQQ TITLE CU/ZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDIS K91E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: SODC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CU/ZN SUPEROXIDE DISMUTASE, ELECTROSTATIC GUIDANCE, NEISSERIA KEYWDS 2 MENINGITIDIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DIDONATO,C.J.KASSMANN,C.K.BRUNS,D.E.CABELLI,Z.CAO,L.B.TABATABAI, AUTHOR 2 J.S.KROLL,E.D.GETZOFF REVDAT 4 20-OCT-21 2AQQ 1 REMARK SEQADV LINK REVDAT 3 16-NOV-11 2AQQ 1 VERSN HETATM REVDAT 2 24-FEB-09 2AQQ 1 VERSN REVDAT 1 31-OCT-06 2AQQ 0 JRNL AUTH M.DIDONATO,C.J.KASSMANN,C.K.BRUNS,D.E.CABELLI,Z.CAO, JRNL AUTH 2 L.B.TABATABAI,J.S.KROLL,E.D.GETZOFF JRNL TITL CU/ZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDIS K91E JRNL TITL 2 MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1760140.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5168 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4440 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 506 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.69000 REMARK 3 B22 (A**2) : 5.31000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.120 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.710 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 45.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 96 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: WILD-TYPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMSO4, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.83050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.83050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.34250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 51.07244 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.09780 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 64.68500 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 51.07244 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 64.68500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.09780 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 51.07244 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 67.09780 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU C 251 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 892 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 900 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 903 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 23 REMARK 465 GLU A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 THR A 27 REMARK 465 ILE A 28 REMARK 465 PRO A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 HIS B 23 REMARK 465 GLU B 24 REMARK 465 HIS B 25 REMARK 465 ASN B 26 REMARK 465 THR B 27 REMARK 465 ILE B 28 REMARK 465 PRO B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 HIS C 23 REMARK 465 GLU C 24 REMARK 465 HIS C 25 REMARK 465 ASN C 26 REMARK 465 THR C 27 REMARK 465 ILE C 28 REMARK 465 PRO C 29 REMARK 465 LYS C 30 REMARK 465 GLY C 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 96.22 153.17 REMARK 500 VAL A 44 -60.40 -96.74 REMARK 500 ASP A 120 35.03 -98.73 REMARK 500 ASP B 67 70.49 -151.84 REMARK 500 ASP C 120 40.45 -99.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 250 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 GLU A 73 OE2 54.6 REMARK 620 3 HIS A 133 ND1 115.0 84.7 REMARK 620 4 GLU B 73 OE1 78.7 133.3 119.2 REMARK 620 5 HIS B 133 ND1 117.8 97.8 115.8 104.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 HIS A 81 NE2 141.8 REMARK 620 3 HIS A 160 NE2 101.9 116.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 ND1 REMARK 620 2 HIS A 113 ND1 102.0 REMARK 620 3 HIS A 122 ND1 103.4 124.0 REMARK 620 4 ASP A 125 OD1 110.3 97.1 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 B 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 ND1 REMARK 620 2 HIS B 81 NE2 140.6 REMARK 620 3 HIS B 160 NE2 98.1 121.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 104 ND1 REMARK 620 2 HIS B 113 ND1 102.6 REMARK 620 3 HIS B 122 ND1 102.7 125.0 REMARK 620 4 ASP B 125 OD1 109.9 95.3 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 251 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 73 OE1 REMARK 620 2 GLU C 73 OE2 141.3 REMARK 620 3 GLU C 73 OE1 90.0 51.4 REMARK 620 4 HIS C 133 ND1 108.2 88.9 115.4 REMARK 620 5 HIS C 133 ND1 113.2 86.7 109.4 117.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 C 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 79 ND1 REMARK 620 2 HIS C 81 NE2 141.5 REMARK 620 3 HIS C 160 NE2 98.3 120.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 104 ND1 REMARK 620 2 HIS C 113 ND1 104.3 REMARK 620 3 HIS C 122 ND1 103.3 124.1 REMARK 620 4 ASP C 125 OD1 110.1 95.5 118.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AQM RELATED DB: PDB REMARK 900 RELATED ID: 2AQN RELATED DB: PDB REMARK 900 RELATED ID: 2AQP RELATED DB: PDB REMARK 900 RELATED ID: 2AQR RELATED DB: PDB REMARK 900 RELATED ID: 2AQS RELATED DB: PDB REMARK 900 RELATED ID: 2AQT RELATED DB: PDB DBREF 2AQQ A 23 186 UNP Q59623 SODC_NEIMB 23 186 DBREF 2AQQ B 23 186 UNP Q59623 SODC_NEIMB 23 186 DBREF 2AQQ C 23 186 UNP Q59623 SODC_NEIMB 23 186 SEQADV 2AQQ GLU A 91 UNP Q59623 LYS 91 ENGINEERED MUTATION SEQADV 2AQQ GLU B 91 UNP Q59623 LYS 91 ENGINEERED MUTATION SEQADV 2AQQ GLU C 91 UNP Q59623 LYS 91 ENGINEERED MUTATION SEQRES 1 A 164 HIS GLU HIS ASN THR ILE PRO LYS GLY ALA SER ILE GLU SEQRES 2 A 164 VAL LYS VAL GLN GLN LEU ASP PRO VAL ASN GLY ASN LYS SEQRES 3 A 164 ASP VAL GLY THR VAL THR ILE THR GLU SER ASN TYR GLY SEQRES 4 A 164 LEU VAL PHE THR PRO ASP LEU GLN GLY LEU SER GLU GLY SEQRES 5 A 164 LEU HIS GLY PHE HIS ILE HIS GLU ASN PRO SER CYS GLU SEQRES 6 A 164 PRO LYS GLU GLU GLU GLY LYS LEU THR ALA GLY LEU GLY SEQRES 7 A 164 ALA GLY GLY HIS TRP ASP PRO LYS GLY ALA LYS GLN HIS SEQRES 8 A 164 GLY TYR PRO TRP GLN ASP ASP ALA HIS LEU GLY ASP LEU SEQRES 9 A 164 PRO ALA LEU THR VAL LEU HIS ASP GLY THR ALA THR ASN SEQRES 10 A 164 PRO VAL LEU ALA PRO ARG LEU LYS HIS LEU ASP ASP VAL SEQRES 11 A 164 ARG GLY HIS SER ILE MET ILE HIS THR GLY GLY ASP ASN SEQRES 12 A 164 HIS SER ASP HIS PRO ALA PRO LEU GLY GLY GLY GLY PRO SEQRES 13 A 164 ARG MET ALA CYS GLY VAL ILE LYS SEQRES 1 B 164 HIS GLU HIS ASN THR ILE PRO LYS GLY ALA SER ILE GLU SEQRES 2 B 164 VAL LYS VAL GLN GLN LEU ASP PRO VAL ASN GLY ASN LYS SEQRES 3 B 164 ASP VAL GLY THR VAL THR ILE THR GLU SER ASN TYR GLY SEQRES 4 B 164 LEU VAL PHE THR PRO ASP LEU GLN GLY LEU SER GLU GLY SEQRES 5 B 164 LEU HIS GLY PHE HIS ILE HIS GLU ASN PRO SER CYS GLU SEQRES 6 B 164 PRO LYS GLU GLU GLU GLY LYS LEU THR ALA GLY LEU GLY SEQRES 7 B 164 ALA GLY GLY HIS TRP ASP PRO LYS GLY ALA LYS GLN HIS SEQRES 8 B 164 GLY TYR PRO TRP GLN ASP ASP ALA HIS LEU GLY ASP LEU SEQRES 9 B 164 PRO ALA LEU THR VAL LEU HIS ASP GLY THR ALA THR ASN SEQRES 10 B 164 PRO VAL LEU ALA PRO ARG LEU LYS HIS LEU ASP ASP VAL SEQRES 11 B 164 ARG GLY HIS SER ILE MET ILE HIS THR GLY GLY ASP ASN SEQRES 12 B 164 HIS SER ASP HIS PRO ALA PRO LEU GLY GLY GLY GLY PRO SEQRES 13 B 164 ARG MET ALA CYS GLY VAL ILE LYS SEQRES 1 C 164 HIS GLU HIS ASN THR ILE PRO LYS GLY ALA SER ILE GLU SEQRES 2 C 164 VAL LYS VAL GLN GLN LEU ASP PRO VAL ASN GLY ASN LYS SEQRES 3 C 164 ASP VAL GLY THR VAL THR ILE THR GLU SER ASN TYR GLY SEQRES 4 C 164 LEU VAL PHE THR PRO ASP LEU GLN GLY LEU SER GLU GLY SEQRES 5 C 164 LEU HIS GLY PHE HIS ILE HIS GLU ASN PRO SER CYS GLU SEQRES 6 C 164 PRO LYS GLU GLU GLU GLY LYS LEU THR ALA GLY LEU GLY SEQRES 7 C 164 ALA GLY GLY HIS TRP ASP PRO LYS GLY ALA LYS GLN HIS SEQRES 8 C 164 GLY TYR PRO TRP GLN ASP ASP ALA HIS LEU GLY ASP LEU SEQRES 9 C 164 PRO ALA LEU THR VAL LEU HIS ASP GLY THR ALA THR ASN SEQRES 10 C 164 PRO VAL LEU ALA PRO ARG LEU LYS HIS LEU ASP ASP VAL SEQRES 11 C 164 ARG GLY HIS SER ILE MET ILE HIS THR GLY GLY ASP ASN SEQRES 12 C 164 HIS SER ASP HIS PRO ALA PRO LEU GLY GLY GLY GLY PRO SEQRES 13 C 164 ARG MET ALA CYS GLY VAL ILE LYS HET CU1 A 200 1 HET CU A 250 1 HET ZN A 201 1 HET CU1 B 200 1 HET ZN B 201 1 HET SO4 B 300 5 HET CU1 C 200 1 HET CU C 251 1 HET ZN C 201 1 HETNAM CU1 COPPER (I) ION HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 4 CU1 3(CU 1+) FORMUL 5 CU 2(CU 2+) FORMUL 6 ZN 3(ZN 2+) FORMUL 9 SO4 O4 S 2- FORMUL 13 HOH *497(H2 O) HELIX 1 1 GLY A 98 GLY A 102 5 5 HELIX 2 2 HIS A 148 ARG A 153 1 6 HELIX 3 3 ALA A 171 GLY A 176 5 6 HELIX 4 4 GLY B 98 GLY B 102 5 5 HELIX 5 5 HIS B 148 ARG B 153 1 6 HELIX 6 6 ALA B 171 GLY B 176 5 6 HELIX 7 7 GLY C 98 GLY C 102 5 5 HELIX 8 8 HIS C 148 VAL C 152 5 5 HELIX 9 9 ALA C 171 GLY C 176 5 6 SHEET 1 A 7 PHE A 78 HIS A 81 0 SHEET 2 A 7 HIS A 155 HIS A 160 -1 O MET A 158 N HIS A 79 SHEET 3 A 7 ARG A 179 ILE A 185 -1 O ILE A 185 N HIS A 155 SHEET 4 A 7 ILE A 34 GLN A 40 -1 N GLN A 39 O CYS A 182 SHEET 5 A 7 LYS A 48 SER A 58 -1 O LYS A 48 N GLN A 40 SHEET 6 A 7 GLY A 61 LEU A 68 -1 O VAL A 63 N THR A 56 SHEET 7 A 7 VAL A 141 ALA A 143 -1 O VAL A 141 N PHE A 64 SHEET 1 B 2 GLY A 74 HIS A 76 0 SHEET 2 B 2 LEU A 129 VAL A 131 -1 O VAL A 131 N GLY A 74 SHEET 1 C 2 LYS A 89 GLU A 91 0 SHEET 2 C 2 LYS A 94 THR A 96 -1 O THR A 96 N LYS A 89 SHEET 1 D 7 PHE B 78 HIS B 81 0 SHEET 2 D 7 HIS B 155 HIS B 160 -1 O MET B 158 N HIS B 79 SHEET 3 D 7 ARG B 179 ILE B 185 -1 O ILE B 185 N HIS B 155 SHEET 4 D 7 SER B 33 GLN B 40 -1 N GLN B 39 O CYS B 182 SHEET 5 D 7 LYS B 48 SER B 58 -1 O LYS B 48 N GLN B 40 SHEET 6 D 7 GLY B 61 LEU B 68 -1 O THR B 65 N THR B 54 SHEET 7 D 7 VAL B 141 ALA B 143 -1 O VAL B 141 N PHE B 64 SHEET 1 E 2 GLY B 74 HIS B 76 0 SHEET 2 E 2 LEU B 129 VAL B 131 -1 O VAL B 131 N GLY B 74 SHEET 1 F 2 LYS B 89 GLU B 91 0 SHEET 2 F 2 LYS B 94 THR B 96 -1 O LYS B 94 N GLU B 91 SHEET 1 G 7 PHE C 78 HIS C 81 0 SHEET 2 G 7 HIS C 155 HIS C 160 -1 O MET C 158 N HIS C 79 SHEET 3 G 7 ARG C 179 ILE C 185 -1 O GLY C 183 N ILE C 157 SHEET 4 G 7 SER C 33 GLN C 40 -1 N GLN C 39 O CYS C 182 SHEET 5 G 7 LYS C 48 SER C 58 -1 O LYS C 48 N GLN C 40 SHEET 6 G 7 GLY C 61 LEU C 68 -1 O THR C 65 N THR C 54 SHEET 7 G 7 VAL C 141 ALA C 143 -1 O VAL C 141 N PHE C 64 SHEET 1 H 2 GLY C 74 HIS C 76 0 SHEET 2 H 2 LEU C 129 VAL C 131 -1 O VAL C 131 N GLY C 74 SHEET 1 I 2 LYS C 89 GLU C 91 0 SHEET 2 I 2 LYS C 94 THR C 96 -1 O LYS C 94 N GLU C 91 SSBOND 1 CYS A 86 CYS A 182 1555 1555 2.03 SSBOND 2 CYS B 86 CYS B 182 1555 1555 2.03 SSBOND 3 CYS C 86 CYS C 182 1555 1555 2.03 LINK OE1 GLU A 73 CU CU A 250 1555 1555 1.88 LINK OE2 GLU A 73 CU CU A 250 1555 1555 2.67 LINK ND1 HIS A 79 CU CU1 A 200 1555 1555 2.01 LINK NE2 HIS A 81 CU CU1 A 200 1555 1555 2.00 LINK ND1 HIS A 104 ZN ZN A 201 1555 1555 2.05 LINK ND1 HIS A 113 ZN ZN A 201 1555 1555 2.05 LINK ND1 HIS A 122 ZN ZN A 201 1555 1555 2.10 LINK OD1 ASP A 125 ZN ZN A 201 1555 1555 1.92 LINK ND1 HIS A 133 CU CU A 250 1555 1555 2.05 LINK NE2 HIS A 160 CU CU1 A 200 1555 1555 2.04 LINK CU CU A 250 OE1 GLU B 73 1555 1555 1.96 LINK CU CU A 250 ND1 HIS B 133 1555 1555 2.00 LINK ND1 HIS B 79 CU CU1 B 200 1555 1555 2.08 LINK NE2 HIS B 81 CU CU1 B 200 1555 1555 2.02 LINK ND1 HIS B 104 ZN ZN B 201 1555 1555 2.09 LINK ND1 HIS B 113 ZN ZN B 201 1555 1555 2.08 LINK ND1 HIS B 122 ZN ZN B 201 1555 1555 2.11 LINK OD1 ASP B 125 ZN ZN B 201 1555 1555 1.92 LINK NE2 HIS B 160 CU CU1 B 200 1555 1555 2.05 LINK OE1 GLU C 73 CU CU C 251 1555 1555 2.11 LINK OE2 GLU C 73 CU CU C 251 2656 1555 2.77 LINK OE1 GLU C 73 CU CU C 251 2656 1555 2.07 LINK ND1 HIS C 79 CU CU1 C 200 1555 1555 2.08 LINK NE2 HIS C 81 CU CU1 C 200 1555 1555 2.02 LINK ND1 HIS C 104 ZN ZN C 201 1555 1555 2.02 LINK ND1 HIS C 113 ZN ZN C 201 1555 1555 2.08 LINK ND1 HIS C 122 ZN ZN C 201 1555 1555 2.08 LINK OD1 ASP C 125 ZN ZN C 201 1555 1555 1.91 LINK ND1 HIS C 133 CU CU C 251 1555 1555 1.86 LINK ND1 HIS C 133 CU CU C 251 2656 1555 1.87 LINK NE2 HIS C 160 CU CU1 C 200 1555 1555 2.04 CISPEP 1 HIS A 169 PRO A 170 0 0.20 CISPEP 2 HIS B 169 PRO B 170 0 0.26 CISPEP 3 HIS C 169 PRO C 170 0 -0.03 SITE 1 AC1 4 HIS A 79 HIS A 81 HIS A 104 HIS A 160 SITE 1 AC2 4 HIS B 79 HIS B 81 HIS B 104 HIS B 160 SITE 1 AC3 4 HIS C 79 HIS C 81 HIS C 104 HIS C 160 SITE 1 AC4 4 GLU A 73 HIS A 133 GLU B 73 HIS B 133 SITE 1 AC5 2 GLU C 73 HIS C 133 SITE 1 AC6 4 HIS A 104 HIS A 113 HIS A 122 ASP A 125 SITE 1 AC7 4 HIS B 104 HIS B 113 HIS B 122 ASP B 125 SITE 1 AC8 4 HIS C 104 HIS C 113 HIS C 122 ASP C 125 SITE 1 AC9 5 ASN A 59 LYS A 111 ASP B 119 ASP B 120 SITE 2 AC9 5 HOH B 478 CRYST1 99.661 64.685 82.843 90.00 125.91 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010034 0.000000 0.007265 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014903 0.00000