PDB Short entry for 2AX3 HEADER TRANSFERASE 02-SEP-05 2AX3 TITLE CRYSTAL STRUCTURE OF A PUTATIVE CARBOHYDRATE KINASE (TM0922) FROM TITLE 2 THERMOTOGA MARITIMA MSB8 AT 2.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TM0922; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UNKNOWN PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0922; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: UNKNOWN PEPTIDE, PROBABLY FROM EXPRESSION HOST KEYWDS PUTATIVE CARBOHYDRATE KINASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2AX3 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2AX3 1 REMARK REVDAT 4 13-JUL-11 2AX3 1 VERSN REVDAT 3 28-JUL-10 2AX3 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2AX3 1 VERSN REVDAT 1 04-OCT-05 2AX3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (TM0922) FROM JRNL TITL 2 THERMOTOGA MARITIMA AT 2.27 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3790 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3591 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5156 ; 1.572 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8294 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 6.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.940 ;24.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;14.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4265 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 836 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3815 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1935 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2470 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 175 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 109 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2551 ; 2.183 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 0.524 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3996 ; 3.120 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 5.970 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1156 ; 7.842 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5772 11.6235 10.3546 REMARK 3 T TENSOR REMARK 3 T11: -0.1262 T22: 0.0160 REMARK 3 T33: -0.0390 T12: -0.0066 REMARK 3 T13: -0.0043 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.7193 L22: 1.3735 REMARK 3 L33: 3.3776 L12: 0.1530 REMARK 3 L13: -0.2710 L23: 0.9032 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: -0.0135 S13: 0.1411 REMARK 3 S21: -0.0735 S22: 0.0974 S23: 0.0274 REMARK 3 S31: -0.2255 S32: 0.2062 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9740 -5.0451 41.3345 REMARK 3 T TENSOR REMARK 3 T11: -0.1110 T22: -0.0949 REMARK 3 T33: -0.0661 T12: 0.0204 REMARK 3 T13: -0.0217 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.8960 L22: 0.9593 REMARK 3 L33: 1.0622 L12: 0.5213 REMARK 3 L13: -0.0666 L23: -0.2435 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0695 S13: -0.1549 REMARK 3 S21: 0.0862 S22: 0.0266 S23: -0.1788 REMARK 3 S31: 0.0245 S32: 0.1485 S33: -0.0616 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0929 -3.0527 8.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.3415 REMARK 3 T33: 0.2395 T12: -0.0328 REMARK 3 T13: 0.0534 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4865 L22: 28.2745 REMARK 3 L33: 36.0702 L12: 3.4808 REMARK 3 L13: 3.6905 L23: 21.1917 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.3949 S13: 0.6074 REMARK 3 S21: 0.8207 S22: -0.1983 S23: 0.9756 REMARK 3 S31: 0.6531 S32: -1.8006 S33: 0.2594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A SMALL PEPTIDE IS BOUND WHICH CO-PURIFIED WITH TM0922. THE REMARK 3 PEPTIDE REMARK 3 IS LIKELY FROM THE E. COLI EXPRESSION HOST AND IS OF UNKNOWN REMARK 3 SEQUENCE. REMARK 3 IT HAS BEEN MODELED AS A 8 RESIDUE PEPTIDE. RESIDUES 3-6 HAVE THE REMARK 3 BEST REMARK 3 DENSITY. BASED ON DENSITY RESIDUES 3,5 AND 6 WERE ASSIGNED AS TRP, REMARK 3 PHE REMARK 3 AND HIS. RESIDUE 4 IS LIKELY A CYS OR SER, BUT HAS BEEN MODELED REMARK 3 AS UNK REMARK 3 ALONG WITH THE REMAINING RESIDUES. REMARK 4 REMARK 4 2AX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979245, 0.979078, 0.891940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 28.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M NACL, 0.1M CACODYLATE, PH 6.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.63200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.93650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 60.63200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 76.93650 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.63200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 76.93650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 60.63200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 76.93650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.63200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 76.93650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.63200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 76.93650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 60.63200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 76.93650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.63200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.63200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.93650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 43790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 126350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A 490 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ILE A 4 CD1 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 68 CE NZ REMARK 470 LYS A 77 CB CG CD CE NZ REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 92 NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 GLU A 108 CD OE1 OE2 REMARK 470 ARG A 122 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 131 CD OE1 OE2 REMARK 470 LYS A 138 CE NZ REMARK 470 ASN A 155 OD1 ND2 REMARK 470 LYS A 158 NZ REMARK 470 ILE A 177 CD1 REMARK 470 LYS A 190 CD CE NZ REMARK 470 SER A 205 OG REMARK 470 ASN A 207 CG OD1 ND2 REMARK 470 ARG A 213 CZ NH1 NH2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 ARG A 217 NE CZ NH1 NH2 REMARK 470 LYS A 234 CE NZ REMARK 470 ILE A 274 CD1 REMARK 470 ARG A 278 CZ NH1 NH2 REMARK 470 GLU A 290 CB CG CD OE1 OE2 REMARK 470 LYS A 291 NZ REMARK 470 GLU A 304 CD OE1 OE2 REMARK 470 LYS A 307 CE NZ REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 333 CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 375 NZ REMARK 470 LYS A 393 CD CE NZ REMARK 470 GLU A 394 OE1 OE2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 LYS A 489 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 147 -69.16 72.75 REMARK 500 ARG A 161 -47.54 60.20 REMARK 500 ARG A 223 71.91 -111.83 REMARK 500 TYR A 244 77.68 -115.26 REMARK 500 GLU A 336 57.12 -101.99 REMARK 500 ALA A 343 -120.93 47.48 REMARK 500 THR A 364 61.29 -117.78 REMARK 500 TYR A 383 16.96 55.42 REMARK 500 SER A 403 -173.74 -174.71 REMARK 500 GLN A 467 -160.97 -118.58 REMARK 500 UNK B 7 -81.15 -72.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 491 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282791 RELATED DB: TARGETDB DBREF 2AX3 A 1 490 UNP Q9X024 Q9X024_THEMA 1 490 DBREF 2AX3 B 1 8 PDB 2AX3 2AX3 1 8 SEQADV 2AX3 MSE A -11 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 GLY A -10 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 SER A -9 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 ASP A -8 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 LYS A -7 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 ILE A -6 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A -5 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A -4 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A -3 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A -2 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A -1 UNP Q9X024 EXPRESSION TAG SEQADV 2AX3 HIS A 0 UNP Q9X024 EXPRESSION TAG SEQRES 1 A 502 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 502 LYS GLU ILE ASP GLU LEU THR ILE LYS GLU TYR GLY VAL SEQRES 3 A 502 ASP SER ARG ILE LEU MSE GLU ARG ALA GLY ILE SER VAL SEQRES 4 A 502 VAL LEU ALA MSE GLU GLU GLU LEU GLY ASN LEU SER ASP SEQRES 5 A 502 TYR ARG PHE LEU VAL LEU CYS GLY GLY GLY ASN ASN GLY SEQRES 6 A 502 GLY ASP GLY PHE VAL VAL ALA ARG ASN LEU LEU GLY VAL SEQRES 7 A 502 VAL LYS ASP VAL LEU VAL VAL PHE LEU GLY LYS LYS LYS SEQRES 8 A 502 THR PRO ASP CYS GLU TYR ASN TYR GLY LEU TYR LYS LYS SEQRES 9 A 502 PHE GLY GLY LYS VAL VAL GLU GLN PHE GLU PRO SER ILE SEQRES 10 A 502 LEU ASN GLU PHE ASP VAL VAL VAL ASP ALA ILE PHE GLY SEQRES 11 A 502 THR GLY LEU ARG GLY GLU ILE THR GLY GLU TYR ALA GLU SEQRES 12 A 502 ILE ILE ASN LEU VAL ASN LYS SER GLY LYS VAL VAL VAL SEQRES 13 A 502 SER VAL ASP VAL PRO SER GLY ILE ASP SER ASN THR GLY SEQRES 14 A 502 LYS VAL LEU ARG THR ALA VAL LYS ALA ASP LEU THR VAL SEQRES 15 A 502 THR PHE GLY VAL PRO LYS ILE GLY HIS ILE LEU PHE PRO SEQRES 16 A 502 GLY ARG ASP LEU THR GLY LYS LEU LYS VAL ALA ASN ILE SEQRES 17 A 502 GLY HIS PRO VAL HIS LEU ILE ASN SER ILE ASN ARG TYR SEQRES 18 A 502 VAL ILE THR ARG GLU MSE VAL ARG SER LEU LEU PRO GLU SEQRES 19 A 502 ARG PRO ARG ASP SER HIS LYS GLY THR TYR GLY LYS VAL SEQRES 20 A 502 LEU ILE ILE ALA GLY SER ARG LEU TYR SER GLY ALA PRO SEQRES 21 A 502 VAL LEU SER GLY MSE GLY SER LEU LYS VAL GLY THR GLY SEQRES 22 A 502 LEU VAL LYS LEU ALA VAL PRO PHE PRO GLN ASN LEU ILE SEQRES 23 A 502 ALA THR SER ARG PHE PRO GLU LEU ILE SER VAL PRO ILE SEQRES 24 A 502 ASP THR GLU LYS GLY PHE PHE SER LEU GLN ASN LEU GLN SEQRES 25 A 502 GLU CYS LEU GLU LEU SER LYS ASP VAL ASP VAL VAL ALA SEQRES 26 A 502 ILE GLY PRO GLY LEU GLY ASN ASN GLU HIS VAL ARG GLU SEQRES 27 A 502 PHE VAL ASN GLU PHE LEU LYS THR LEU GLU LYS PRO ALA SEQRES 28 A 502 VAL ILE ASP ALA ASP ALA ILE ASN VAL LEU ASP THR SER SEQRES 29 A 502 VAL LEU LYS GLU ARG LYS SER PRO ALA VAL LEU THR PRO SEQRES 30 A 502 HIS PRO GLY GLU MSE ALA ARG LEU VAL LYS LYS THR VAL SEQRES 31 A 502 GLY ASP VAL LYS TYR ASN TYR GLU LEU ALA GLU GLU PHE SEQRES 32 A 502 ALA LYS GLU ASN ASP CYS VAL LEU VAL LEU LYS SER ALA SEQRES 33 A 502 THR THR ILE VAL THR ASP GLY GLU LYS THR LEU PHE ASN SEQRES 34 A 502 ILE THR GLY ASN THR GLY LEU SER LYS GLY GLY SER GLY SEQRES 35 A 502 ASP VAL LEU THR GLY MSE ILE ALA GLY PHE ILE ALA GLN SEQRES 36 A 502 GLY LEU SER PRO LEU GLU ALA SER THR VAL SER VAL TYR SEQRES 37 A 502 LEU HIS GLY PHE ALA ALA GLU LEU PHE GLU GLN ASP GLU SEQRES 38 A 502 ARG GLY LEU THR ALA SER GLU LEU LEU ARG LEU ILE PRO SEQRES 39 A 502 GLU ALA ILE ARG ARG LEU LYS GLU SEQRES 1 B 8 UNK UNK TRP UNK PHE HIS UNK UNK MODRES 2AX3 MSE A 1 MET SELENOMETHIONINE MODRES 2AX3 MSE A 20 MET SELENOMETHIONINE MODRES 2AX3 MSE A 31 MET SELENOMETHIONINE MODRES 2AX3 MSE A 215 MET SELENOMETHIONINE MODRES 2AX3 MSE A 253 MET SELENOMETHIONINE MODRES 2AX3 MSE A 370 MET SELENOMETHIONINE MODRES 2AX3 MSE A 436 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 31 8 HET MSE A 215 8 HET MSE A 253 8 HET MSE A 370 8 HET MSE A 436 8 HET GOL A 491 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *172(H2 O) HELIX 1 1 HIS A 0 GLU A 11 1 12 HELIX 2 2 ASP A 15 GLY A 36 1 22 HELIX 3 3 GLY A 50 LEU A 64 1 15 HELIX 4 4 THR A 80 PHE A 93 1 14 HELIX 5 5 GLU A 102 PHE A 109 5 8 HELIX 6 6 THR A 126 SER A 139 1 14 HELIX 7 7 LYS A 176 LEU A 181 1 6 HELIX 8 8 PRO A 183 GLY A 189 1 7 HELIX 9 9 PRO A 199 ASN A 204 1 6 HELIX 10 10 THR A 212 LEU A 220 1 9 HELIX 11 11 HIS A 228 TYR A 232 5 5 HELIX 12 12 GLY A 246 VAL A 258 1 13 HELIX 13 13 ASN A 272 PHE A 279 1 8 HELIX 14 14 SER A 295 GLN A 297 5 3 HELIX 15 15 ASN A 298 ASP A 308 1 11 HELIX 16 16 ASN A 321 LEU A 335 1 15 HELIX 17 17 ASP A 342 VAL A 348 1 7 HELIX 18 18 ASP A 350 GLU A 356 1 7 HELIX 19 19 HIS A 366 LYS A 375 1 10 HELIX 20 20 THR A 377 LYS A 382 1 6 HELIX 21 21 ASN A 384 ASP A 396 1 13 HELIX 22 22 ASN A 421 SER A 425 5 5 HELIX 23 23 GLY A 428 GLN A 443 1 16 HELIX 24 24 SER A 446 LEU A 464 1 19 HELIX 25 25 ASP A 468 LEU A 472 5 5 HELIX 26 26 THR A 473 LYS A 489 1 17 SHEET 1 A 8 VAL A 97 VAL A 98 0 SHEET 2 A 8 ASP A 69 PHE A 74 1 N PHE A 74 O VAL A 98 SHEET 3 A 8 ARG A 42 CYS A 47 1 N PHE A 43 O ASP A 69 SHEET 4 A 8 VAL A 111 ALA A 115 1 O VAL A 111 N LEU A 44 SHEET 5 A 8 VAL A 142 VAL A 146 1 O VAL A 142 N VAL A 112 SHEET 6 A 8 LEU A 168 PHE A 172 1 O LEU A 168 N SER A 145 SHEET 7 A 8 LYS A 190 ALA A 194 1 O ALA A 194 N THR A 171 SHEET 8 A 8 PHE B 5 HIS B 6 -1 O HIS B 6 N VAL A 193 SHEET 1 B10 ARG A 208 VAL A 210 0 SHEET 2 B10 THR A 414 ASN A 417 1 O PHE A 416 N TYR A 209 SHEET 3 B10 THR A 406 THR A 409 -1 N VAL A 408 O LEU A 415 SHEET 4 B10 VAL A 398 LEU A 401 -1 N LEU A 401 O ILE A 407 SHEET 5 B10 ALA A 361 LEU A 363 1 N LEU A 363 O VAL A 400 SHEET 6 B10 ALA A 339 ILE A 341 1 N ILE A 341 O VAL A 362 SHEET 7 B10 VAL A 311 ILE A 314 1 N ILE A 314 O VAL A 340 SHEET 8 B10 LYS A 234 ILE A 238 1 N ILE A 238 O ALA A 313 SHEET 9 B10 LEU A 262 PRO A 268 1 O LEU A 262 N VAL A 235 SHEET 10 B10 ILE A 283 ILE A 287 1 O VAL A 285 N LEU A 265 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LEU A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N GLU A 21 1555 1555 1.34 LINK C ALA A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N GLU A 32 1555 1555 1.32 LINK C GLU A 214 N MSE A 215 1555 1555 1.31 LINK C MSE A 215 N VAL A 216 1555 1555 1.32 LINK C GLY A 252 N MSE A 253 1555 1555 1.31 LINK C MSE A 253 N GLY A 254 1555 1555 1.34 LINK C GLU A 369 N MSE A 370 1555 1555 1.32 LINK C MSE A 370 N ALA A 371 1555 1555 1.32 LINK C GLY A 435 N MSE A 436 1555 1555 1.32 LINK C MSE A 436 N ILE A 437 1555 1555 1.33 CISPEP 1 PHE A 182 PRO A 183 0 -1.21 CISPEP 2 PHE A 269 PRO A 270 0 -0.20 SITE 1 AC1 3 ASP A 5 ASP A 55 HOH A 596 CRYST1 121.264 121.264 153.873 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006500 0.00000