PDB Short entry for 2B82 HEADER HYDROLASE 06-OCT-05 2B82 TITLE CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/PHOSPHOTRANSFERASE TITLE 2 TERNARY COMPLEX WITH ADENOSINE AND PHOSPHATE BOUND TO THE CATALYTIC TITLE 3 METAL AT 1.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS B ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APHA; COMPND 5 EC: 3.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: APHA, NAPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CLASS B ACID PHOSPHATASE; DDDD ACID PHOSPHATASE; METALLO-ENZYME; AMP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,C.FORLEO,M.BENVENUTI,M.C.THALLER,G.M.ROSSOLINI,S.MANGANI REVDAT 5 23-AUG-23 2B82 1 REMARK LINK REVDAT 4 13-JUL-11 2B82 1 VERSN REVDAT 3 24-FEB-09 2B82 1 VERSN REVDAT 2 07-FEB-06 2B82 1 JRNL REVDAT 1 29-NOV-05 2B82 0 SPRSDE 29-NOV-05 2B82 1RMW JRNL AUTH V.CALDERONE,C.FORLEO,M.BENVENUTI,M.C.THALLER,G.M.ROSSOLINI, JRNL AUTH 2 S.MANGANI JRNL TITL A STRUCTURE-BASED PROPOSAL FOR THE CATALYTIC MECHANISM OF JRNL TITL 2 THE BACTERIAL ACID PHOSPHATASE APHA BELONGING TO THE DDDD JRNL TITL 3 SUPERFAMILY OF PHOSPHOHYDROLASES JRNL REF J.MOL.BIOL. V. 355 708 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16330049 JRNL DOI 10.1016/J.JMB.2005.10.068 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.THALLER,S.SCHIPPA,A.BONCI,S.CRESTI,G.M.ROSSOLINI REMARK 1 TITL IDENTIFICATION OF THE GENE (APHA) ENCODING THE CLASS B ACID REMARK 1 TITL 2 PHOSPHATASE/PHOSPHOTRANSFERASE OF ESCHERICHIA COLI MG1655 REMARK 1 TITL 3 AND CHARACTERIZATION OF ITS PRODUCT REMARK 1 REF FEMS MICROBIOL.LETT. V. 146 191 1997 REMARK 1 REFN ISSN 0378-1097 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FORLEO,M.BENVENUTI,V.CALDERONE,S.SCHIPPA,J.D.DOCQUIER, REMARK 1 AUTH 2 M.C.THALLER,G.M.ROSSOLINI,S.MANGANI REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY CHARACTERIZATION OF THE CLASS B ACID PHOSPHATASE REMARK 1 TITL 3 (APHA) FROM ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1058 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 104254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 8072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 351 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 856 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3494 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4764 ; 1.391 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 5.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;39.941 ;24.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;11.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2736 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1795 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2398 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 638 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 82 ; 0.080 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2147 ; 0.647 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3426 ; 1.043 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 1.446 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 2.202 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3567 ; 0.813 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 858 ; 1.703 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3324 ; 1.616 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000034791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96111 REMARK 200 MONOCHROMATOR : SI (311) AND SI (111) REMARK 200 OPTICS : CHANNEL - CUT SI MONOCHROMATOR REMARK 200 AND CYLINDRICAL GRAZING REMARK 200 INCIDENCE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 76.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1N8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APHA 6MG/ML, 50 MM NA ACETATE, 25% PEG REMARK 280 6000, 10MM AMP, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.48550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.43400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.48550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.43400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER, BUT THERE IS A DIMER REMARK 300 IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1351 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1272 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1343 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1360 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 45 -64.77 -98.02 REMARK 500 SER A 64 68.46 -158.60 REMARK 500 PRO A 147 132.46 -36.29 REMARK 500 ILE B 45 -66.15 -99.45 REMARK 500 SER B 64 69.82 -156.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1013 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 46 O 90.1 REMARK 620 3 ASP A 167 OD1 85.5 87.2 REMARK 620 4 PO4 A1004 O3 94.8 98.4 174.5 REMARK 620 5 HOH A1436 O 172.0 86.6 87.1 92.9 REMARK 620 6 HOH A1449 O 90.8 171.7 84.7 89.8 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1014 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 ASP B 46 O 90.0 REMARK 620 3 ASP B 167 OD1 83.1 88.1 REMARK 620 4 PO4 B1005 O3 99.6 98.4 172.9 REMARK 620 5 HOH B1425 O 93.2 170.4 83.3 89.9 REMARK 620 6 HOH B1433 O 169.6 84.9 87.8 90.0 90.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8J RELATED DB: PDB REMARK 900 RELATED ID: 1N8N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AU3+ COMPLEX OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 1.7 A RESOLUTION REMARK 900 RELATED ID: 1N9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BROMIDE ADDUCT OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A RESOLUTION DBREF 2B82 A 2 212 UNP P32697 APHA_ECOLI 27 237 DBREF 2B82 B 2 212 UNP P32697 APHA_ECOLI 27 237 SEQRES 1 A 211 SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA ARG SEQRES 2 A 211 LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL ALA SEQRES 3 A 211 GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET ALA SEQRES 4 A 211 VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SER SEQRES 5 A 211 PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO GLU SEQRES 6 A 211 SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU LYS SEQRES 7 A 211 MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS GLU SEQRES 8 A 211 VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG GLY SEQRES 9 A 211 ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR LYS SEQRES 10 A 211 THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE HIS SEQRES 11 A 211 ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA GLY SEQRES 12 A 211 ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU GLN SEQRES 13 A 211 ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP ASN SEQRES 14 A 211 ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY ILE SEQRES 15 A 211 ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO LEU SEQRES 16 A 211 PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL ASN SEQRES 17 A 211 SER GLU TYR SEQRES 1 B 211 SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA ARG SEQRES 2 B 211 LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL ALA SEQRES 3 B 211 GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET ALA SEQRES 4 B 211 VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SER SEQRES 5 B 211 PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO GLU SEQRES 6 B 211 SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU LYS SEQRES 7 B 211 MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS GLU SEQRES 8 B 211 VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG GLY SEQRES 9 B 211 ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR LYS SEQRES 10 B 211 THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE HIS SEQRES 11 B 211 ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA GLY SEQRES 12 B 211 ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU GLN SEQRES 13 B 211 ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP ASN SEQRES 14 B 211 ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY ILE SEQRES 15 B 211 ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO LEU SEQRES 16 B 211 PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL ASN SEQRES 17 B 211 SER GLU TYR HET MG A1013 1 HET PO4 A1004 5 HET ADN A1001 38 HET MG B1014 1 HET PO4 B1005 5 HET ADN B1002 38 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM ADN ADENOSINE FORMUL 3 MG 2(MG 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 ADN 2(C10 H13 N5 O4) FORMUL 9 HOH *856(H2 O) HELIX 1 1 ASN A 11 GLU A 17 1 7 HELIX 2 2 SER A 25 LEU A 33 1 9 HELIX 3 3 SER A 52 SER A 64 1 13 HELIX 4 4 GLU A 68 LYS A 72 5 5 HELIX 5 5 ASN A 73 ASN A 82 1 10 HELIX 6 6 GLY A 83 SER A 88 5 6 HELIX 7 7 LYS A 91 GLY A 105 1 15 HELIX 8 8 THR A 121 PHE A 130 1 10 HELIX 9 9 LYS A 152 LYS A 159 1 8 HELIX 10 10 SER A 168 VAL A 178 1 11 HELIX 11 11 ASN B 11 GLU B 17 1 7 HELIX 12 12 SER B 25 LEU B 33 1 9 HELIX 13 13 SER B 52 SER B 64 1 13 HELIX 14 14 GLU B 68 LYS B 72 5 5 HELIX 15 15 ASN B 73 ASN B 82 1 10 HELIX 16 16 GLY B 83 SER B 88 5 6 HELIX 17 17 LYS B 91 GLY B 105 1 15 HELIX 18 18 THR B 121 PHE B 130 1 10 HELIX 19 19 LYS B 152 LYS B 159 1 8 HELIX 20 20 SER B 168 VAL B 178 1 11 SHEET 1 A 7 HIS A 22 VAL A 24 0 SHEET 2 A 7 GLU A 205 ILE A 207 1 O VAL A 206 N VAL A 24 SHEET 3 A 7 ARG A 181 ARG A 184 1 N ARG A 184 O GLU A 205 SHEET 4 A 7 ILE A 161 GLY A 166 1 N ARG A 162 O ARG A 181 SHEET 5 A 7 ALA A 40 PHE A 43 1 N GLY A 42 O ILE A 163 SHEET 6 A 7 ALA A 107 THR A 112 1 O ALA A 107 N VAL A 41 SHEET 7 A 7 ILE A 141 PHE A 142 1 O ILE A 141 N PHE A 110 SHEET 1 B 2 LEU A 50 PHE A 51 0 SHEET 2 B 2 ILE A 89 PRO A 90 -1 O ILE A 89 N PHE A 51 SHEET 1 C 7 HIS B 22 VAL B 24 0 SHEET 2 C 7 GLU B 205 ILE B 207 1 O VAL B 206 N VAL B 24 SHEET 3 C 7 ARG B 181 ARG B 184 1 N ARG B 184 O GLU B 205 SHEET 4 C 7 ILE B 161 GLY B 166 1 N ARG B 162 O ARG B 181 SHEET 5 C 7 ALA B 40 PHE B 43 1 N ALA B 40 O ARG B 162 SHEET 6 C 7 ALA B 107 THR B 112 1 O ALA B 107 N VAL B 41 SHEET 7 C 7 ILE B 141 PHE B 142 1 O ILE B 141 N PHE B 110 SHEET 1 D 2 LEU B 50 PHE B 51 0 SHEET 2 D 2 ILE B 89 PRO B 90 -1 O ILE B 89 N PHE B 51 LINK OD2 ASP A 44 MG MG A1013 1555 1555 2.06 LINK O ASP A 46 MG MG A1013 1555 1555 2.13 LINK OD1 ASP A 167 MG MG A1013 1555 1555 2.10 LINK O3 PO4 A1004 MG MG A1013 1555 1555 2.02 LINK MG MG A1013 O HOH A1436 1555 1555 2.07 LINK MG MG A1013 O HOH A1449 1555 1555 2.13 LINK OD2 ASP B 44 MG MG B1014 1555 1555 2.02 LINK O ASP B 46 MG MG B1014 1555 1555 2.09 LINK OD1 ASP B 167 MG MG B1014 1555 1555 2.13 LINK O3 PO4 B1005 MG MG B1014 1555 1555 2.07 LINK MG MG B1014 O HOH B1425 1555 1555 2.10 LINK MG MG B1014 O HOH B1433 1555 1555 2.13 CISPEP 1 LYS A 194 PRO A 195 0 -0.39 CISPEP 2 SER B 2 PRO B 3 0 -0.50 CISPEP 3 LYS B 194 PRO B 195 0 0.91 SITE 1 AC1 6 ASP A 44 ASP A 46 ASP A 167 PO4 A1004 SITE 2 AC1 6 HOH A1436 HOH A1449 SITE 1 AC2 6 ASP B 44 ASP B 46 ASP B 167 PO4 B1005 SITE 2 AC2 6 HOH B1425 HOH B1433 SITE 1 AC3 10 ASP A 44 ILE A 45 ASP A 46 THR A 112 SITE 2 AC3 10 GLY A 113 LYS A 152 ADN A1001 MG A1013 SITE 3 AC3 10 HOH A1436 HOH A1449 SITE 1 AC4 11 ASP B 44 ILE B 45 ASP B 46 THR B 112 SITE 2 AC4 11 GLY B 113 LYS B 152 ADN B1002 MG B1014 SITE 3 AC4 11 HOH B1054 HOH B1425 HOH B1433 SITE 1 AC5 13 PHE A 56 LYS A 60 GLU A 68 TYR A 70 SITE 2 AC5 13 LEU A 71 GLY A 113 ASP A 145 THR A 192 SITE 3 AC5 13 TYR A 193 LYS A 194 PO4 A1004 HOH A1045 SITE 4 AC5 13 HOH A1247 SITE 1 AC6 15 PHE B 56 GLU B 68 TYR B 70 LEU B 71 SITE 2 AC6 15 TRP B 77 GLY B 113 THR B 192 TYR B 193 SITE 3 AC6 15 LYS B 194 PO4 B1005 HOH B1051 HOH B1170 SITE 4 AC6 15 HOH B1254 HOH B1345 HOH B1434 CRYST1 90.971 66.868 86.120 90.00 116.96 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010993 0.000000 0.005591 0.00000 SCALE2 0.000000 0.014955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013027 0.00000