PDB Short entry for 2BBG HEADER ALLERGEN 24-APR-98 2BBG TITLE RAGWEED POLLEN ALLERGEN FROM AMBROSIA TRIFIDA V, NMR, 30 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN ALLERGEN 5; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMBROSIA TRIFIDA; SOURCE 3 ORGANISM_COMMON: GIANT RAGWEED; SOURCE 4 ORGANISM_TAXID: 4214; SOURCE 5 OTHER_DETAILS: POLLEN KEYWDS PROTEIN ALLERGEN, SMALL HIGHLY DISULFIDE BONDED, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.L.WARREN,C.J.TUNER,G.A.PETSKO,A.T.BRUNGER REVDAT 3 09-MAR-22 2BBG 1 REMARK REVDAT 2 24-FEB-09 2BBG 1 VERSN REVDAT 1 17-JUN-98 2BBG 0 JRNL AUTH G.L.WARREN,C.J.TURNER,G.A.PETSKO,A.T.BRUNGER JRNL TITL A HIGHLY PRECISE SOLUTION 1H NMR STRUCTURE OF RAGWEED JRNL TITL 2 ALLERGEN AMB. T. V JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.J.METZLER,K.VALENTINE,M.ROEBBER,M.S.FRIEDRICHS,D.G.MARSH, REMARK 1 AUTH 2 L.MUELLER REMARK 1 TITL DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF REMARK 1 TITL 2 RAGWEED ALLERGEN AMB T V BY NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF BIOCHEMISTRY V. 31 5117 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.GOODFRIEND,A.M.CHOUDHURY,D.G.KLAPPER,K.M.COULTER,G.DORVAL, REMARK 1 AUTH 2 J.DEL CARPIO,C.K.OSTERLAND REMARK 1 TITL RA5G, A HOMOLOGUE OF RA5 IN GIANT RAGWEED POLLEN: ISOLATION, REMARK 1 TITL 2 HLA-DR-ASSOCIATED ACTIVITY AND AMINO ACID SEQUENCE REMARK 1 REF MOL.IMMUNOL. V. 22 899 1985 REMARK 1 REFN ISSN 0161-5890 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.A.VIDUSEK,M.F.ROBERTS,L.GOODFRIEND REMARK 1 TITL 500-MHZ 1H NMR STUDIES OF RAGWEED ALLERGEN RA5 REMARK 1 REF BIOCHEMISTRY V. 24 2747 1985 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 MANUSCRIPT SUBMITTED TO JMB ABOVE. REMARK 4 REMARK 4 2BBG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177810. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQFCOSY; PCOSY; PECOSY; REMARK 210 TOCSY; 3DNOESY-TOCSY; 3DTOCSY- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 501.9 MHZ; 591.1 MHZ REMARK 210 SPECTROMETER MODEL : HOME BUILT REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MSI FELIX FELIX, NMRCOMPASS REMARK 210 METHOD USED : ITERATIVE SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : BONDS RMS < 0.01, ANGLE RMS < REMARK 210 1.0, IMPROPER RMS < 1.0, 0 NOE REMARK 210 VIOL > 0.5, 0 DIHEDRAL VIOL > 5.0 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 35 SG CYS A 39 2.09 REMARK 500 CD LYS A 13 SG CYS A 18 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 23.58 -154.69 REMARK 500 1 LYS A 16 -145.69 -119.90 REMARK 500 1 ILE A 22 11.28 -163.83 REMARK 500 1 LYS A 37 -79.13 -61.90 REMARK 500 2 THR A 9 24.11 -154.79 REMARK 500 2 LYS A 16 -147.22 -114.45 REMARK 500 2 SER A 20 139.96 -171.82 REMARK 500 2 ILE A 22 -169.05 -164.86 REMARK 500 2 CYS A 26 74.29 36.24 REMARK 500 2 LYS A 37 -79.19 -61.61 REMARK 500 3 THR A 9 22.21 -154.90 REMARK 500 3 LYS A 16 -145.53 -119.41 REMARK 500 3 ILE A 22 12.70 -164.53 REMARK 500 3 LYS A 37 -80.01 -63.31 REMARK 500 4 THR A 9 21.14 -154.83 REMARK 500 4 LYS A 16 -144.14 -119.18 REMARK 500 4 ILE A 22 12.94 -163.99 REMARK 500 4 LYS A 37 -79.73 -62.81 REMARK 500 5 THR A 9 26.75 -155.77 REMARK 500 5 LYS A 16 -146.10 -123.49 REMARK 500 5 ILE A 22 9.80 -163.72 REMARK 500 5 CYS A 26 75.46 44.90 REMARK 500 5 CYS A 35 -71.44 -59.49 REMARK 500 5 LYS A 37 -78.87 -60.78 REMARK 500 6 ASP A 2 -157.15 -83.73 REMARK 500 6 THR A 9 23.16 -154.88 REMARK 500 6 LYS A 16 -145.64 -117.57 REMARK 500 6 ILE A 22 12.37 -163.98 REMARK 500 6 LYS A 37 -79.33 -62.47 REMARK 500 7 THR A 9 21.31 -154.63 REMARK 500 7 LYS A 16 -143.80 -118.17 REMARK 500 7 ILE A 22 15.55 -164.39 REMARK 500 7 LYS A 37 -79.47 -62.84 REMARK 500 8 THR A 9 25.97 -156.05 REMARK 500 8 LYS A 16 -143.05 -118.60 REMARK 500 8 ILE A 22 13.71 -164.13 REMARK 500 8 LYS A 37 -78.81 -61.77 REMARK 500 9 ASP A 2 -139.88 -82.93 REMARK 500 9 THR A 9 20.54 -154.63 REMARK 500 9 LYS A 16 -145.15 -122.02 REMARK 500 9 CYS A 26 70.41 41.57 REMARK 500 9 LYS A 37 -79.92 -63.19 REMARK 500 10 THR A 9 23.33 -155.18 REMARK 500 10 LYS A 16 -147.42 -113.82 REMARK 500 10 SER A 20 139.37 -171.66 REMARK 500 10 ILE A 22 -169.82 -165.00 REMARK 500 10 CYS A 26 75.14 39.32 REMARK 500 10 LYS A 37 -79.47 -61.85 REMARK 500 11 THR A 9 20.69 -155.14 REMARK 500 11 LYS A 16 -142.20 -123.23 REMARK 500 REMARK 500 THIS ENTRY HAS 161 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBG RELATED DB: PDB DBREF 2BBG A 1 40 UNP P10414 MPAT5_AMBTR 34 73 SEQRES 1 A 40 ASP ASP GLY LEU CYS TYR GLU GLY THR ASN CYS GLY LYS SEQRES 2 A 40 VAL GLY LYS TYR CYS CYS SER PRO ILE GLY LYS TYR CYS SEQRES 3 A 40 VAL CYS TYR ASP SER LYS ALA ILE CYS ASN LYS ASN CYS SEQRES 4 A 40 THR HELIX 1 1 LYS A 32 ASN A 36 1 5 SHEET 1 A 2 TYR A 17 CYS A 19 0 SHEET 2 A 2 VAL A 27 TYR A 29 -1 N TYR A 29 O TYR A 17 SSBOND 1 CYS A 5 CYS A 35 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 26 1555 1555 2.03 SSBOND 3 CYS A 18 CYS A 28 1555 1555 2.01 SSBOND 4 CYS A 19 CYS A 39 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000