PDB Short entry for 2BEH HEADER BLOOD CLOTTING 24-OCT-05 2BEH TITLE CRYSTAL STRUCTURE OF ANTITHROMBIN VARIANT S137A/V317C/T401C WITH TITLE 2 PLASMA LATENT ANTITHROMBIN CAVEAT 2BEH NAG A 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN-III; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: ATIII; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTITHROMBIN-III; COMPND 9 CHAIN: L; COMPND 10 SYNONYM: ATIII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINC1, AT3; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: GOLDEN HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BHK; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: FROM HUMAN PLASMA KEYWDS ANTITHROMBIN DIMER, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR D.J.JOHNSON,S.A.LUIS,J.A.HUNTINGTON REVDAT 6 20-OCT-21 2BEH 1 SEQADV HETSYN REVDAT 5 29-JUL-20 2BEH 1 CAVEAT COMPND REMARK HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 13-JUL-11 2BEH 1 VERSN REVDAT 3 16-MAR-10 2BEH 1 JRNL REVDAT 2 24-FEB-09 2BEH 1 VERSN REVDAT 1 01-NOV-05 2BEH 0 JRNL AUTH D.J.JOHNSON,J.LANGDOWN,W.LI,S.A.LUIS,T.P.BAGLIN, JRNL AUTH 2 J.A.HUNTINGTON JRNL TITL CRYSTAL STRUCTURE OF MONOMERIC NATIVE ANTITHROMBIN REVEALS A JRNL TITL 2 NOVEL REACTIVE CENTER LOOP CONFORMATION. JRNL REF J.BIOL.CHEM. V. 281 35478 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16973611 JRNL DOI 10.1074/JBC.M607204200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1029627.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : R-FREE SET TAKEN FROM 1E04 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4695 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 245 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.73000 REMARK 3 B22 (A**2) : 19.51000 REMARK 3 B33 (A**2) : -12.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 11.720; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 14.170; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 31.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : GOL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 7.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.63700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAIN I IS THE ACTIVE MONOMER, AND L IS THE LATENT MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, L, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS I 1 REMARK 465 GLY I 2 REMARK 465 SER I 3 REMARK 465 ALA I 30 REMARK 465 THR I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 465 GLU I 34 REMARK 465 GLY I 35 REMARK 465 SER I 36 REMARK 465 GLU I 37 REMARK 465 GLN I 38 REMARK 465 LYS I 39 REMARK 465 ILE I 40 REMARK 465 GLU I 357 REMARK 465 GLY I 358 REMARK 465 ARG I 359 REMARK 465 ASP I 360 REMARK 465 LYS I 432 REMARK 465 HIS L 1 REMARK 465 GLY L 2 REMARK 465 SER L 3 REMARK 465 PRO L 4 REMARK 465 SER L 25 REMARK 465 PRO L 26 REMARK 465 GLU L 27 REMARK 465 LYS L 28 REMARK 465 LYS L 29 REMARK 465 ALA L 30 REMARK 465 THR L 31 REMARK 465 GLU L 32 REMARK 465 ASP L 33 REMARK 465 GLU L 34 REMARK 465 GLY L 35 REMARK 465 SER L 36 REMARK 465 GLU L 37 REMARK 465 GLN L 38 REMARK 465 LYS L 39 REMARK 465 ILE L 40 REMARK 465 PRO L 41 REMARK 465 GLU L 42 REMARK 465 LYS L 114 REMARK 465 ARG L 399 REMARK 465 VAL L 400 REMARK 465 THR L 401 REMARK 465 PHE L 402 REMARK 465 VAL L 431 REMARK 465 LYS L 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET I 17 CG SD CE REMARK 470 ASN I 18 CG OD1 ND2 REMARK 470 MET I 20 CG SD CE REMARK 470 LYS I 29 CG CD CE NZ REMARK 470 GLU I 42 CG CD OE1 OE2 REMARK 470 ARG I 47 CD NE CZ NH1 NH2 REMARK 470 ASP I 117 CG OD1 OD2 REMARK 470 LYS I 125 CD CE NZ REMARK 470 ARG I 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 133 CD CE NZ REMARK 470 LYS I 136 CG CD CE NZ REMARK 470 LYS I 139 CG CD CE NZ REMARK 470 LEU I 152 CG CD1 CD2 REMARK 470 LYS I 169 CE NZ REMARK 470 LYS I 188 CG CD CE NZ REMARK 470 LYS I 193 CD CE NZ REMARK 470 ARG I 197 CD NE CZ NH1 NH2 REMARK 470 GLU I 205 CG CD OE1 OE2 REMARK 470 ARG I 235 CD NE CZ NH1 NH2 REMARK 470 GLU I 237 CD OE1 OE2 REMARK 470 LYS I 257 CE NZ REMARK 470 LYS I 275 NZ REMARK 470 LYS I 294 CD CE NZ REMARK 470 ILE I 325 CD1 REMARK 470 LYS I 332 CE NZ REMARK 470 GLU I 333 CG CD OE1 OE2 REMARK 470 LYS I 348 CE NZ REMARK 470 ASP I 361 CG OD1 OD2 REMARK 470 GLU I 378 CD OE1 OE2 REMARK 470 GLU I 381 CG CD OE1 OE2 REMARK 470 LYS I 403 CD CE NZ REMARK 470 LYS L 11 CG CD CE NZ REMARK 470 ARG L 13 CG CD NE CZ NH1 NH2 REMARK 470 MET L 17 CG SD CE REMARK 470 ILE L 22 CG2 CD1 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 53 CD CE NZ REMARK 470 LYS L 107 CE NZ REMARK 470 GLU L 113 CG CD OE1 OE2 REMARK 470 GLN L 118 CG CD OE1 NE2 REMARK 470 LYS L 125 CG CD CE NZ REMARK 470 ARG L 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 132 CG CD NE CZ NH1 NH2 REMARK 470 ASN L 135 CG OD1 ND2 REMARK 470 LYS L 136 CG CD CE NZ REMARK 470 LYS L 139 CD CE NZ REMARK 470 LYS L 150 CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 GLU L 177 CG CD OE1 OE2 REMARK 470 GLN L 181 CG CD OE1 NE2 REMARK 470 ARG L 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 188 CG CD CE NZ REMARK 470 ASP L 200 CG OD1 OD2 REMARK 470 GLU L 205 CG CD OE1 OE2 REMARK 470 GLU L 209 CG CD OE1 OE2 REMARK 470 LYS L 228 CG CD CE NZ REMARK 470 GLU L 232 CG CD OE1 OE2 REMARK 470 ARG L 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 236 CD CE NZ REMARK 470 GLU L 245 CG CD OE1 OE2 REMARK 470 GLU L 255 CG CD OE1 OE2 REMARK 470 LYS L 257 CD CE NZ REMARK 470 GLU L 265 CG CD OE1 OE2 REMARK 470 LYS L 287 CG CD CE NZ REMARK 470 GLU L 289 CG CD OE1 OE2 REMARK 470 LYS L 290 CG CD CE NZ REMARK 470 LYS L 294 CG CD CE NZ REMARK 470 LYS L 297 CD CE NZ REMARK 470 GLU L 298 CG CD OE1 OE2 REMARK 470 GLU L 306 CG CD OE1 OE2 REMARK 470 GLU L 333 CG CD OE1 OE2 REMARK 470 LYS L 348 CG CD CE NZ REMARK 470 LYS L 350 CD CE NZ REMARK 470 LYS L 370 CD CE NZ REMARK 470 ASN L 396 CG OD1 ND2 REMARK 470 ASN L 398 CG OD1 ND2 REMARK 470 ARG L 406 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA I 43 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 CYS I 317 CA - CB - SG ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL I 5 88.66 91.64 REMARK 500 ASP I 14 30.96 -90.10 REMARK 500 ASN I 18 72.58 76.72 REMARK 500 PRO I 19 173.11 -45.65 REMARK 500 MET I 20 -23.29 70.43 REMARK 500 PRO I 26 -177.60 -53.38 REMARK 500 GLU I 42 -151.57 -163.98 REMARK 500 ALA I 43 5.48 -176.44 REMARK 500 SER I 82 -75.73 -61.72 REMARK 500 ASN I 96 -137.00 39.49 REMARK 500 LYS I 107 7.47 59.00 REMARK 500 SER I 112 124.51 -32.80 REMARK 500 GLU I 113 13.79 45.34 REMARK 500 ARG I 132 -74.36 -105.00 REMARK 500 LYS I 133 1.12 -57.58 REMARK 500 LYS I 139 82.00 -65.18 REMARK 500 ALA I 143 64.63 -108.16 REMARK 500 ALA I 168 131.13 -178.07 REMARK 500 GLU I 177 -87.70 -90.73 REMARK 500 THR I 199 -107.47 -63.77 REMARK 500 VAL I 212 -69.18 -104.82 REMARK 500 ASP I 243 0.47 -62.55 REMARK 500 GLU I 245 -158.77 -88.63 REMARK 500 ARG I 261 125.01 179.09 REMARK 500 VAL I 263 -156.45 -100.89 REMARK 500 ASP I 277 -23.44 78.84 REMARK 500 GLU I 289 -78.32 -57.45 REMARK 500 LYS I 290 153.67 -48.23 REMARK 500 LYS I 332 -64.96 -20.70 REMARK 500 GLU I 347 -62.35 -94.33 REMARK 500 LEU I 351 59.38 -115.82 REMARK 500 GLU I 381 105.91 77.18 REMARK 500 ALA I 382 178.61 132.65 REMARK 500 ALA I 383 25.96 -174.93 REMARK 500 SER I 385 141.27 -32.45 REMARK 500 ARG I 399 146.51 -31.83 REMARK 500 ASN I 428 101.08 -164.71 REMARK 500 ALA L 10 176.47 -52.92 REMARK 500 PRO L 12 -74.27 -45.12 REMARK 500 PRO L 16 9.75 -64.58 REMARK 500 ASN L 18 99.78 -171.43 REMARK 500 MET L 20 -71.90 -53.35 REMARK 500 CYS L 21 -169.01 -70.35 REMARK 500 ASN L 45 -4.55 -50.15 REMARK 500 ASP L 72 -17.31 -42.17 REMARK 500 ASN L 96 -121.53 59.36 REMARK 500 SER L 112 -31.80 -13.55 REMARK 500 ILE L 119 -60.26 -29.73 REMARK 500 ARG L 129 4.37 -69.61 REMARK 500 LYS L 133 140.93 -176.11 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE ANTITHROMBIN IN ITS MONOMERIC FORM REMARK 900 RELATED ID: 1TB6 RELATED DB: PDB REMARK 900 2.5A CRYSTAL STRUCTURE OF THE ANTITHROMBIN-THROMBIN-HEPARIN TERNARY REMARK 900 COMPLEX REMARK 900 RELATED ID: 2B5T RELATED DB: PDB REMARK 900 2.1 ANGSTROM STRUCTURE OF A NONPRODUCTIVE COMPLEX BETWEEN REMARK 900 ANTITHROMBIN, SYNTHETIC HEPARIN MIMETIC SR123781 AND TWO S195A REMARK 900 THROMBIN MOLECULES DBREF 2BEH I 1 432 UNP P01008 ANT3_HUMAN 33 464 DBREF 2BEH L 1 432 UNP P01008 ANT3_HUMAN 33 464 SEQADV 2BEH ALA I 137 UNP P01008 SER 169 ENGINEERED MUTATION SEQADV 2BEH CYS I 317 UNP P01008 VAL 349 ENGINEERED MUTATION SEQADV 2BEH CYS I 401 UNP P01008 THR 433 ENGINEERED MUTATION SEQRES 1 I 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 I 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 I 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 I 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 I 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 I 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 I 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 I 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 I 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 I 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 I 432 TYR ARG LYS ALA ASN LYS ALA SER LYS LEU VAL SER ALA SEQRES 12 I 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 I 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 I 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 I 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 I 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 I 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 I 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 I 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 I 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 I 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 I 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 I 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 I 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 I 432 GLU MET MET LEU CYS VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 I 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 I 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 I 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 I 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 I 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 I 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL CYS PHE LYS SEQRES 32 I 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 I 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 I 432 CYS VAL LYS SEQRES 1 L 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 L 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 L 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 L 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 L 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 L 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 L 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 L 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 L 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 L 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 L 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 L 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 L 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 L 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 L 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 L 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 L 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 L 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 L 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 L 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 L 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 L 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 L 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 L 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 L 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 L 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 L 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 L 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 L 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 L 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 L 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 L 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 L 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 L 432 CYS VAL LYS MODRES 2BEH ASN I 96 ASN GLYCOSYLATION SITE MODRES 2BEH ASN I 155 ASN GLYCOSYLATION SITE MODRES 2BEH ASN I 192 ASN GLYCOSYLATION SITE MODRES 2BEH ASN L 96 ASN GLYCOSYLATION SITE MODRES 2BEH ASN L 155 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG I 861 14 HET GOL I 901 6 HET NAG L 801 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 MAN C6 H12 O6 FORMUL 7 GOL C3 H8 O3 FORMUL 9 HOH *17(H2 O) HELIX 1 1 LYS I 11 ILE I 15 5 5 HELIX 2 2 ASN I 45 LYS I 70 1 26 HELIX 3 3 SER I 79 LEU I 92 1 14 HELIX 4 4 CYS I 95 PHE I 106 1 12 HELIX 5 5 LYS I 107 ILE I 111 5 5 HELIX 6 6 THR I 115 ARG I 132 1 18 HELIX 7 7 ASN I 155 VAL I 165 1 11 HELIX 8 8 ASN I 178 THR I 194 1 17 HELIX 9 9 SER I 230 THR I 234 5 5 HELIX 10 10 ALA I 264 GLY I 266 5 3 HELIX 11 11 SER I 291 LEU I 299 1 9 HELIX 12 12 THR I 300 GLU I 310 1 11 HELIX 13 13 LEU I 331 MET I 338 1 8 HELIX 14 14 THR L 44 LYS L 70 1 27 HELIX 15 15 SER L 79 LEU L 92 1 14 HELIX 16 16 CYS L 95 PHE L 106 1 12 HELIX 17 17 LYS L 107 ILE L 111 5 5 HELIX 18 18 THR L 115 ARG L 132 1 18 HELIX 19 19 ASN L 155 TYR L 166 1 12 HELIX 20 20 ASN L 178 THR L 194 1 17 HELIX 21 21 SER L 230 THR L 234 5 5 HELIX 22 22 ALA L 264 GLY L 266 5 3 HELIX 23 23 SER L 291 GLU L 298 1 8 HELIX 24 24 THR L 300 LEU L 311 1 12 HELIX 25 25 LEU L 331 MET L 338 1 8 HELIX 26 26 VAL L 341 SER L 345 5 5 SHEET 1 A 7 ILE I 76 LEU I 78 0 SHEET 2 A 7 THR I 419 VAL I 426 -1 O ARG I 425 N ILE I 76 SHEET 3 A 7 PHE I 408 GLU I 414 -1 N VAL I 410 O GLY I 424 SHEET 4 A 7 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 A 7 GLN I 268 PRO I 273 -1 N GLN I 268 O LEU I 285 SHEET 6 A 7 SER I 246 ARG I 262 -1 N ARG I 259 O GLU I 271 SHEET 7 A 7 ARG I 235 TYR I 240 -1 N GLU I 237 O ALA I 249 SHEET 1 B 8 ILE I 76 LEU I 78 0 SHEET 2 B 8 THR I 419 VAL I 426 -1 O ARG I 425 N ILE I 76 SHEET 3 B 8 PHE I 408 GLU I 414 -1 N VAL I 410 O GLY I 424 SHEET 4 B 8 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 B 8 GLN I 268 PRO I 273 -1 N GLN I 268 O LEU I 285 SHEET 6 B 8 SER I 246 ARG I 262 -1 N ARG I 259 O GLU I 271 SHEET 7 B 8 GLU I 312 PRO I 321 -1 O MET I 314 N PHE I 258 SHEET 8 B 8 CYS I 401 LYS I 403 1 O PHE I 402 N CYS I 317 SHEET 1 C 5 GLN I 171 LEU I 173 0 SHEET 2 C 5 LYS I 139 ASP I 149 1 N LEU I 146 O GLN I 171 SHEET 3 C 5 LEU I 213 LEU I 224 -1 O VAL I 214 N PHE I 147 SHEET 4 C 5 VAL I 364 VAL I 375 1 O SER I 365 N LEU I 213 SHEET 5 C 5 PHE I 323 SER I 330 -1 N PHE I 329 O HIS I 369 SHEET 1 D 4 GLN I 171 LEU I 173 0 SHEET 2 D 4 LYS I 139 ASP I 149 1 N LEU I 146 O GLN I 171 SHEET 3 D 4 LEU I 213 LEU I 224 -1 O VAL I 214 N PHE I 147 SHEET 4 D 4 GLY I 379 SER I 380 -1 O SER I 380 N GLY I 223 SHEET 1 E 8 ALA I 387 ILE I 390 0 SHEET 2 E 8 GLU L 312 PRO L 321 1 O VAL L 317 N VAL I 389 SHEET 3 E 8 CYS L 247 ARG L 262 -1 N GLN L 254 O VAL L 318 SHEET 4 E 8 GLN L 268 PRO L 273 -1 O VAL L 269 N ARG L 261 SHEET 5 E 8 ILE L 279 LEU L 285 -1 O MET L 281 N LEU L 272 SHEET 6 E 8 PHE L 408 GLU L 414 -1 O PHE L 411 N VAL L 282 SHEET 7 E 8 THR L 419 VAL L 426 -1 O GLY L 424 N VAL L 410 SHEET 8 E 8 ILE L 76 LEU L 78 -1 N ILE L 76 O ARG L 425 SHEET 1 F 4 ALA I 387 ILE I 390 0 SHEET 2 F 4 GLU L 312 PRO L 321 1 O VAL L 317 N VAL I 389 SHEET 3 F 4 CYS L 247 ARG L 262 -1 N GLN L 254 O VAL L 318 SHEET 4 F 4 ARG L 235 PHE L 239 -1 N PHE L 239 O CYS L 247 SHEET 1 G 6 LYS L 169 LEU L 173 0 SHEET 2 G 6 LYS L 139 ASP L 149 1 N LEU L 146 O GLN L 171 SHEET 3 G 6 LEU L 213 LEU L 224 -1 O VAL L 216 N ARG L 145 SHEET 4 G 6 GLY L 379 ILE L 390 -1 O ALA L 382 N PHE L 221 SHEET 5 G 6 VAL L 364 VAL L 375 -1 N ASP L 366 O VAL L 389 SHEET 6 G 6 PHE L 323 SER L 330 -1 N PHE L 323 O VAL L 375 SHEET 1 H 2 THR L 153 PHE L 154 0 SHEET 2 H 2 VAL L 355 GLU L 357 -1 O GLU L 357 N THR L 153 SSBOND 1 CYS I 8 CYS I 128 1555 1555 2.04 SSBOND 2 CYS I 21 CYS I 95 1555 1555 2.03 SSBOND 3 CYS I 247 CYS I 430 1555 1555 2.04 SSBOND 4 CYS I 317 CYS I 401 1555 1555 2.05 SSBOND 5 CYS L 8 CYS L 128 1555 1555 2.03 SSBOND 6 CYS L 21 CYS L 95 1555 1555 2.03 SSBOND 7 CYS L 247 CYS L 430 1555 1555 2.04 LINK ND2 ASN I 96 C1 NAG A 1 1555 1555 1.45 LINK ND2 ASN I 155 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN I 192 C1 NAG I 861 1555 1555 1.45 LINK ND2 ASN L 96 C1 NAG L 801 1555 1555 1.44 LINK ND2 ASN L 155 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.40 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 CRYST1 68.073 97.274 87.388 90.00 105.03 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014690 0.000000 0.003944 0.00000 SCALE2 0.000000 0.010280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011849 0.00000