PDB Short entry for 2BGJ HEADER OXIDOREDUCTASE 23-DEC-04 2BGJ TITLE X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER TITLE 2 CAPSULATUS AT 2.1 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-NADP(H) REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.18.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: 37B4; SOURCE 5 VARIANT: DSM938; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS FERREDOXIN(FLAVODOXIN)-NADP(H) REDUCTASE, FLAVOPROTEINS, ELECTRON KEYWDS 2 TRANSFER, RHODOBACTER CAPSULATUS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.I.PEREZ-DORADO,J.A.HERMOSO,I.NOGUES,S.FRAGO,C.BITTEL,S.G.MAYHEW, AUTHOR 2 C.GOMEZ-MORENO,M.MEDINA,N.CORTEZ,N.CARRILLO REVDAT 3 16-JAN-19 2BGJ 1 JRNL REMARK REVDAT 2 24-FEB-09 2BGJ 1 VERSN REVDAT 1 07-SEP-05 2BGJ 0 JRNL AUTH I.NOGUES,I.PEREZ-DORADO,S.FRAGO,C.BITTEL,S.G.MAYHEW, JRNL AUTH 2 C.GOMEZ-MORENO,J.A.HERMOSO,M.MEDINA,N.CORTEZ,N.CARRILLO JRNL TITL THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER JRNL TITL 2 CAPSULATUS: MOLECULAR STRUCTURE AND CATALYTIC MECHANISM. JRNL REF BIOCHEMISTRY V. 44 11730 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16128574 JRNL DOI 10.1021/BI0508183 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.I.PEREZ-DORADO,C.BITTEL,N.CORTEZ,J.A.HERMOSO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2332 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15583382 REMARK 1 DOI 10.1107/S090744490402640X REMARK 1 REFERENCE 2 REMARK 1 AUTH C.BITTEL,L.C.TABARES,M.ARMESTO,N.CARRILLO,N.CORTEZ REMARK 1 TITL THE OXIDANT-RESPONSIVE DIAPHORASE OF RHODOBACTER CAPSULATUS REMARK 1 TITL 2 IS A FERREDOXIN (FLAVODOXIN)-NADP(H) REDUCTASE REMARK 1 REF FEBS LETT. V. 553 408 2003 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 14572660 REMARK 1 DOI 10.1016/S0014-5793(03)01075-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 105.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.1 REMARK 3 NUMBER OF REFLECTIONS : 57974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3069 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 212 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.353 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 5.280 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.945 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.767 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.188 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.656 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.46 ; 0.50 REMARK 3 GROUP 1 B-FACTOR (A**2) : 0.84 ; 2.00 REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1290022109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 22.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STARTING MODEL USED FOR THE MOLECULAR REPLACEMENT WAS THE REMARK 200 REFINED FPR MODEL OBTAINED IN PRESENCE OF THE DETERGENT N- REMARK 200 HEPTYL-BETA-DTHIOGLUCOSIDE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.81300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 THR B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 ASN B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 PRO B 8 REMARK 465 ILE B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 LYS B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 THR C 1 REMARK 465 THR C 2 REMARK 465 VAL C 3 REMARK 465 ASN C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 THR C 7 REMARK 465 PRO C 8 REMARK 465 ILE C 9 REMARK 465 ALA C 10 REMARK 465 PRO C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 THR D 1 REMARK 465 THR D 2 REMARK 465 VAL D 3 REMARK 465 ASN D 4 REMARK 465 GLU D 5 REMARK 465 THR D 6 REMARK 465 THR D 7 REMARK 465 PRO D 8 REMARK 465 ILE D 9 REMARK 465 ALA D 10 REMARK 465 PRO D 11 REMARK 465 ALA D 12 REMARK 465 LYS D 13 REMARK 465 VAL D 14 REMARK 465 LEU D 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 2066 O HOH D 2067 1.99 REMARK 500 O HOH B 2064 O HOH B 2065 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 86 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 86 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 14 97.34 -64.80 REMARK 500 VAL A 183 52.82 -98.74 REMARK 500 GLU A 184 90.38 -64.55 REMARK 500 ARG A 195 -60.85 -136.45 REMARK 500 ALA A 254 -171.40 173.67 REMARK 500 ARG A 259 -130.74 -123.15 REMARK 500 ASP B 56 -168.50 -72.43 REMARK 500 VAL B 183 53.41 -108.44 REMARK 500 ARG B 195 -55.82 -126.71 REMARK 500 ALA B 254 -170.89 -179.15 REMARK 500 ARG B 259 -130.47 -127.58 REMARK 500 ASP C 56 -166.68 -79.96 REMARK 500 VAL C 183 51.64 -101.74 REMARK 500 GLU C 184 77.82 -57.16 REMARK 500 ALA C 254 -155.74 -145.21 REMARK 500 ARG C 259 -132.97 -127.83 REMARK 500 SER D 23 147.20 -170.78 REMARK 500 ASP D 56 -168.48 -73.72 REMARK 500 ASP D 86 -1.38 77.33 REMARK 500 LEU D 182 7.34 -63.95 REMARK 500 VAL D 183 -23.65 -141.56 REMARK 500 ARG D 195 -58.68 -126.76 REMARK 500 PHE D 198 147.80 -173.13 REMARK 500 ALA D 254 169.88 178.68 REMARK 500 ARG D 259 -129.19 -124.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D1273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BGI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM REMARK 900 RHODOBACTER CAPSULATUS COMPLEXED WITH THREE MOLECULES OF THE REMARK 900 DETERGENT N-HEPTYL-BETA-D-THIOGLUCOSIDE AT 1.7 ANGSTROMS DBREF 2BGJ A 1 272 UNP Q9L6V3 Q9L6V3 1 272 DBREF 2BGJ B 1 272 UNP Q9L6V3 Q9L6V3 1 272 DBREF 2BGJ C 1 272 UNP Q9L6V3 Q9L6V3 1 272 DBREF 2BGJ D 1 272 UNP Q9L6V3 Q9L6V3 1 272 SEQRES 1 A 272 THR THR VAL ASN GLU THR THR PRO ILE ALA PRO ALA LYS SEQRES 2 A 272 VAL LEU PRO ASP ALA GLN THR VAL THR SER VAL ARG HIS SEQRES 3 A 272 TRP THR ASP THR LEU PHE SER PHE ARG VAL THR ARG PRO SEQRES 4 A 272 GLN THR LEU ARG PHE ARG SER GLY GLU PHE VAL MET ILE SEQRES 5 A 272 GLY LEU LEU ASP ASP ASN GLY LYS PRO ILE MET ARG ALA SEQRES 6 A 272 TYR SER ILE ALA SER PRO ALA TRP ASP GLU GLU LEU GLU SEQRES 7 A 272 PHE TYR SER ILE LYS VAL PRO ASP GLY PRO LEU THR SER SEQRES 8 A 272 ARG LEU GLN HIS ILE LYS VAL GLY GLU GLN ILE ILE LEU SEQRES 9 A 272 ARG PRO LYS PRO VAL GLY THR LEU VAL ILE ASP ALA LEU SEQRES 10 A 272 LEU PRO GLY LYS ARG LEU TRP PHE LEU ALA THR GLY THR SEQRES 11 A 272 GLY ILE ALA PRO PHE ALA SER LEU MET ARG GLU PRO GLU SEQRES 12 A 272 ALA TYR GLU LYS PHE ASP GLU VAL ILE MET MET HIS ALA SEQRES 13 A 272 CYS ARG THR VAL ALA GLU LEU GLU TYR GLY ARG GLN LEU SEQRES 14 A 272 VAL GLU ALA LEU GLN GLU ASP PRO LEU ILE GLY GLU LEU SEQRES 15 A 272 VAL GLU GLY LYS LEU LYS TYR TYR PRO THR THR THR ARG SEQRES 16 A 272 GLU GLU PHE HIS HIS MET GLY ARG ILE THR ASP ASN LEU SEQRES 17 A 272 ALA SER GLY LYS VAL PHE GLU ASP LEU GLY ILE ALA PRO SEQRES 18 A 272 MET ASN PRO GLU THR ASP ARG ALA MET VAL CYS GLY SER SEQRES 19 A 272 LEU ALA PHE ASN VAL ASP VAL MET LYS VAL LEU GLU SER SEQRES 20 A 272 TYR GLY LEU ARG GLU GLY ALA ASN SER GLU PRO ARG GLU SEQRES 21 A 272 PHE VAL VAL GLU LYS ALA PHE VAL GLY GLU GLY ILE SEQRES 1 B 272 THR THR VAL ASN GLU THR THR PRO ILE ALA PRO ALA LYS SEQRES 2 B 272 VAL LEU PRO ASP ALA GLN THR VAL THR SER VAL ARG HIS SEQRES 3 B 272 TRP THR ASP THR LEU PHE SER PHE ARG VAL THR ARG PRO SEQRES 4 B 272 GLN THR LEU ARG PHE ARG SER GLY GLU PHE VAL MET ILE SEQRES 5 B 272 GLY LEU LEU ASP ASP ASN GLY LYS PRO ILE MET ARG ALA SEQRES 6 B 272 TYR SER ILE ALA SER PRO ALA TRP ASP GLU GLU LEU GLU SEQRES 7 B 272 PHE TYR SER ILE LYS VAL PRO ASP GLY PRO LEU THR SER SEQRES 8 B 272 ARG LEU GLN HIS ILE LYS VAL GLY GLU GLN ILE ILE LEU SEQRES 9 B 272 ARG PRO LYS PRO VAL GLY THR LEU VAL ILE ASP ALA LEU SEQRES 10 B 272 LEU PRO GLY LYS ARG LEU TRP PHE LEU ALA THR GLY THR SEQRES 11 B 272 GLY ILE ALA PRO PHE ALA SER LEU MET ARG GLU PRO GLU SEQRES 12 B 272 ALA TYR GLU LYS PHE ASP GLU VAL ILE MET MET HIS ALA SEQRES 13 B 272 CYS ARG THR VAL ALA GLU LEU GLU TYR GLY ARG GLN LEU SEQRES 14 B 272 VAL GLU ALA LEU GLN GLU ASP PRO LEU ILE GLY GLU LEU SEQRES 15 B 272 VAL GLU GLY LYS LEU LYS TYR TYR PRO THR THR THR ARG SEQRES 16 B 272 GLU GLU PHE HIS HIS MET GLY ARG ILE THR ASP ASN LEU SEQRES 17 B 272 ALA SER GLY LYS VAL PHE GLU ASP LEU GLY ILE ALA PRO SEQRES 18 B 272 MET ASN PRO GLU THR ASP ARG ALA MET VAL CYS GLY SER SEQRES 19 B 272 LEU ALA PHE ASN VAL ASP VAL MET LYS VAL LEU GLU SER SEQRES 20 B 272 TYR GLY LEU ARG GLU GLY ALA ASN SER GLU PRO ARG GLU SEQRES 21 B 272 PHE VAL VAL GLU LYS ALA PHE VAL GLY GLU GLY ILE SEQRES 1 C 272 THR THR VAL ASN GLU THR THR PRO ILE ALA PRO ALA LYS SEQRES 2 C 272 VAL LEU PRO ASP ALA GLN THR VAL THR SER VAL ARG HIS SEQRES 3 C 272 TRP THR ASP THR LEU PHE SER PHE ARG VAL THR ARG PRO SEQRES 4 C 272 GLN THR LEU ARG PHE ARG SER GLY GLU PHE VAL MET ILE SEQRES 5 C 272 GLY LEU LEU ASP ASP ASN GLY LYS PRO ILE MET ARG ALA SEQRES 6 C 272 TYR SER ILE ALA SER PRO ALA TRP ASP GLU GLU LEU GLU SEQRES 7 C 272 PHE TYR SER ILE LYS VAL PRO ASP GLY PRO LEU THR SER SEQRES 8 C 272 ARG LEU GLN HIS ILE LYS VAL GLY GLU GLN ILE ILE LEU SEQRES 9 C 272 ARG PRO LYS PRO VAL GLY THR LEU VAL ILE ASP ALA LEU SEQRES 10 C 272 LEU PRO GLY LYS ARG LEU TRP PHE LEU ALA THR GLY THR SEQRES 11 C 272 GLY ILE ALA PRO PHE ALA SER LEU MET ARG GLU PRO GLU SEQRES 12 C 272 ALA TYR GLU LYS PHE ASP GLU VAL ILE MET MET HIS ALA SEQRES 13 C 272 CYS ARG THR VAL ALA GLU LEU GLU TYR GLY ARG GLN LEU SEQRES 14 C 272 VAL GLU ALA LEU GLN GLU ASP PRO LEU ILE GLY GLU LEU SEQRES 15 C 272 VAL GLU GLY LYS LEU LYS TYR TYR PRO THR THR THR ARG SEQRES 16 C 272 GLU GLU PHE HIS HIS MET GLY ARG ILE THR ASP ASN LEU SEQRES 17 C 272 ALA SER GLY LYS VAL PHE GLU ASP LEU GLY ILE ALA PRO SEQRES 18 C 272 MET ASN PRO GLU THR ASP ARG ALA MET VAL CYS GLY SER SEQRES 19 C 272 LEU ALA PHE ASN VAL ASP VAL MET LYS VAL LEU GLU SER SEQRES 20 C 272 TYR GLY LEU ARG GLU GLY ALA ASN SER GLU PRO ARG GLU SEQRES 21 C 272 PHE VAL VAL GLU LYS ALA PHE VAL GLY GLU GLY ILE SEQRES 1 D 272 THR THR VAL ASN GLU THR THR PRO ILE ALA PRO ALA LYS SEQRES 2 D 272 VAL LEU PRO ASP ALA GLN THR VAL THR SER VAL ARG HIS SEQRES 3 D 272 TRP THR ASP THR LEU PHE SER PHE ARG VAL THR ARG PRO SEQRES 4 D 272 GLN THR LEU ARG PHE ARG SER GLY GLU PHE VAL MET ILE SEQRES 5 D 272 GLY LEU LEU ASP ASP ASN GLY LYS PRO ILE MET ARG ALA SEQRES 6 D 272 TYR SER ILE ALA SER PRO ALA TRP ASP GLU GLU LEU GLU SEQRES 7 D 272 PHE TYR SER ILE LYS VAL PRO ASP GLY PRO LEU THR SER SEQRES 8 D 272 ARG LEU GLN HIS ILE LYS VAL GLY GLU GLN ILE ILE LEU SEQRES 9 D 272 ARG PRO LYS PRO VAL GLY THR LEU VAL ILE ASP ALA LEU SEQRES 10 D 272 LEU PRO GLY LYS ARG LEU TRP PHE LEU ALA THR GLY THR SEQRES 11 D 272 GLY ILE ALA PRO PHE ALA SER LEU MET ARG GLU PRO GLU SEQRES 12 D 272 ALA TYR GLU LYS PHE ASP GLU VAL ILE MET MET HIS ALA SEQRES 13 D 272 CYS ARG THR VAL ALA GLU LEU GLU TYR GLY ARG GLN LEU SEQRES 14 D 272 VAL GLU ALA LEU GLN GLU ASP PRO LEU ILE GLY GLU LEU SEQRES 15 D 272 VAL GLU GLY LYS LEU LYS TYR TYR PRO THR THR THR ARG SEQRES 16 D 272 GLU GLU PHE HIS HIS MET GLY ARG ILE THR ASP ASN LEU SEQRES 17 D 272 ALA SER GLY LYS VAL PHE GLU ASP LEU GLY ILE ALA PRO SEQRES 18 D 272 MET ASN PRO GLU THR ASP ARG ALA MET VAL CYS GLY SER SEQRES 19 D 272 LEU ALA PHE ASN VAL ASP VAL MET LYS VAL LEU GLU SER SEQRES 20 D 272 TYR GLY LEU ARG GLU GLY ALA ASN SER GLU PRO ARG GLU SEQRES 21 D 272 PHE VAL VAL GLU LYS ALA PHE VAL GLY GLU GLY ILE HET FAD A1273 53 HET FAD B1273 53 HET FAD C1273 53 HET FAD D1273 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 9 HOH *351(H2 O) HELIX 1 1 LEU A 89 GLN A 94 1 6 HELIX 2 2 VAL A 113 ALA A 116 5 4 HELIX 3 3 ILE A 132 MET A 139 1 8 HELIX 4 4 GLU A 141 PHE A 148 1 8 HELIX 5 5 LEU A 163 ASP A 176 1 14 HELIX 6 6 ASP A 176 VAL A 183 1 8 HELIX 7 7 ARG A 203 GLY A 211 1 9 HELIX 8 8 GLY A 211 GLY A 218 1 8 HELIX 9 9 SER A 234 TYR A 248 1 15 HELIX 10 10 LEU B 89 GLN B 94 1 6 HELIX 11 11 VAL B 113 ALA B 116 5 4 HELIX 12 12 ILE B 132 MET B 139 1 8 HELIX 13 13 GLU B 141 PHE B 148 1 8 HELIX 14 14 THR B 159 GLU B 162 5 4 HELIX 15 15 LEU B 163 ASP B 176 1 14 HELIX 16 16 LEU B 178 VAL B 183 1 6 HELIX 17 17 ARG B 203 GLY B 211 1 9 HELIX 18 18 GLY B 211 GLY B 218 1 8 HELIX 19 19 SER B 234 TYR B 248 1 15 HELIX 20 20 LEU C 89 GLN C 94 1 6 HELIX 21 21 VAL C 113 ALA C 116 5 4 HELIX 22 22 ILE C 132 MET C 139 1 8 HELIX 23 23 GLU C 141 LYS C 147 1 7 HELIX 24 24 THR C 159 GLU C 162 5 4 HELIX 25 25 LEU C 163 ASP C 176 1 14 HELIX 26 26 ASP C 176 VAL C 183 1 8 HELIX 27 27 ARG C 203 GLY C 211 1 9 HELIX 28 28 GLY C 211 GLY C 218 1 8 HELIX 29 29 SER C 234 TYR C 248 1 15 HELIX 30 30 LEU D 89 GLN D 94 1 6 HELIX 31 31 VAL D 113 ALA D 116 5 4 HELIX 32 32 ILE D 132 MET D 139 1 8 HELIX 33 33 GLU D 141 LYS D 147 1 7 HELIX 34 34 THR D 159 GLU D 162 5 4 HELIX 35 35 LEU D 163 ASP D 176 1 14 HELIX 36 36 LEU D 178 VAL D 183 1 6 HELIX 37 37 ARG D 203 GLY D 211 1 9 HELIX 38 38 GLY D 211 GLY D 218 1 8 HELIX 39 39 SER D 234 TYR D 248 1 15 SHEET 1 AA 6 PRO A 61 SER A 67 0 SHEET 2 AA 6 PHE A 49 LEU A 55 -1 O VAL A 50 N TYR A 66 SHEET 3 AA 6 GLN A 101 VAL A 109 -1 O ILE A 103 N GLY A 53 SHEET 4 AA 6 ALA A 18 THR A 28 -1 O GLN A 19 N ILE A 102 SHEET 5 AA 6 LEU A 31 THR A 37 -1 O LEU A 31 N TRP A 27 SHEET 6 AA 6 GLU A 76 ILE A 82 -1 O LEU A 77 N VAL A 36 SHEET 1 AB 5 LEU A 187 THR A 193 0 SHEET 2 AB 5 GLU A 150 CYS A 157 1 O VAL A 151 N LYS A 188 SHEET 3 AB 5 ARG A 122 THR A 128 1 O LEU A 123 N ILE A 152 SHEET 4 AB 5 ASP A 227 GLY A 233 1 O ARG A 228 N TRP A 124 SHEET 5 AB 5 PHE A 261 LYS A 265 1 O VAL A 262 N VAL A 231 SHEET 1 BA 6 PRO B 61 SER B 67 0 SHEET 2 BA 6 PHE B 49 LEU B 55 -1 O VAL B 50 N TYR B 66 SHEET 3 BA 6 GLN B 101 VAL B 109 -1 O ILE B 103 N GLY B 53 SHEET 4 BA 6 ALA B 18 THR B 28 -1 O GLN B 19 N ILE B 102 SHEET 5 BA 6 LEU B 31 THR B 37 -1 O LEU B 31 N TRP B 27 SHEET 6 BA 6 GLU B 76 ILE B 82 -1 O LEU B 77 N VAL B 36 SHEET 1 BB 5 LEU B 187 THR B 193 0 SHEET 2 BB 5 GLU B 150 CYS B 157 1 O VAL B 151 N LYS B 188 SHEET 3 BB 5 ARG B 122 THR B 128 1 O LEU B 123 N ILE B 152 SHEET 4 BB 5 ASP B 227 GLY B 233 1 O ARG B 228 N TRP B 124 SHEET 5 BB 5 PHE B 261 LYS B 265 1 O VAL B 262 N VAL B 231 SHEET 1 CA 6 PRO C 61 SER C 67 0 SHEET 2 CA 6 PHE C 49 LEU C 55 -1 O VAL C 50 N TYR C 66 SHEET 3 CA 6 GLN C 101 VAL C 109 -1 O ILE C 103 N GLY C 53 SHEET 4 CA 6 ALA C 18 THR C 28 -1 O GLN C 19 N ILE C 102 SHEET 5 CA 6 LEU C 31 THR C 37 -1 O LEU C 31 N TRP C 27 SHEET 6 CA 6 GLU C 76 ILE C 82 -1 O LEU C 77 N VAL C 36 SHEET 1 CB 5 LEU C 187 THR C 193 0 SHEET 2 CB 5 GLU C 150 CYS C 157 1 O VAL C 151 N LYS C 188 SHEET 3 CB 5 ARG C 122 THR C 128 1 O LEU C 123 N ILE C 152 SHEET 4 CB 5 ASP C 227 GLY C 233 1 O ARG C 228 N TRP C 124 SHEET 5 CB 5 PHE C 261 LYS C 265 1 O VAL C 262 N VAL C 231 SHEET 1 DA 6 PRO D 61 SER D 67 0 SHEET 2 DA 6 PHE D 49 LEU D 55 -1 O VAL D 50 N TYR D 66 SHEET 3 DA 6 GLN D 101 VAL D 109 -1 O ILE D 103 N GLY D 53 SHEET 4 DA 6 ALA D 18 THR D 28 -1 O GLN D 19 N ILE D 102 SHEET 5 DA 6 LEU D 31 THR D 37 -1 O LEU D 31 N TRP D 27 SHEET 6 DA 6 GLU D 76 ILE D 82 -1 O LEU D 77 N VAL D 36 SHEET 1 DB 5 LEU D 187 THR D 193 0 SHEET 2 DB 5 GLU D 150 CYS D 157 1 O VAL D 151 N LYS D 188 SHEET 3 DB 5 ARG D 122 THR D 128 1 O LEU D 123 N ILE D 152 SHEET 4 DB 5 ASP D 227 GLY D 233 1 O ARG D 228 N TRP D 124 SHEET 5 DB 5 PHE D 261 LYS D 265 1 O VAL D 262 N VAL D 231 SITE 1 AC1 27 PHE A 49 ARG A 64 ALA A 65 TYR A 66 SITE 2 AC1 27 SER A 67 TYR A 80 SER A 81 ILE A 82 SITE 3 AC1 27 VAL A 84 GLY A 87 PRO A 88 LEU A 89 SITE 4 AC1 27 THR A 90 THR A 130 ALA A 133 LYS A 265 SITE 5 AC1 27 ALA A 266 PHE A 267 GLY A 271 ILE A 272 SITE 6 AC1 27 HOH A2021 HOH A2028 HOH A2040 HOH A2085 SITE 7 AC1 27 HOH A2086 HOH A2090 HOH A2091 SITE 1 AC2 24 PHE B 49 ARG B 64 ALA B 65 TYR B 66 SITE 2 AC2 24 SER B 67 TYR B 80 SER B 81 ILE B 82 SITE 3 AC2 24 GLY B 87 PRO B 88 LEU B 89 THR B 90 SITE 4 AC2 24 THR B 130 ALA B 133 LYS B 265 ALA B 266 SITE 5 AC2 24 PHE B 267 VAL B 268 GLU B 270 GLY B 271 SITE 6 AC2 24 ILE B 272 HOH B2082 HOH B2083 HOH B2085 SITE 1 AC3 26 ARG C 64 ALA C 65 TYR C 66 SER C 67 SITE 2 AC3 26 TYR C 80 SER C 81 ILE C 82 VAL C 84 SITE 3 AC3 26 GLY C 87 PRO C 88 LEU C 89 THR C 90 SITE 4 AC3 26 THR C 130 ALA C 133 LYS C 265 ALA C 266 SITE 5 AC3 26 PHE C 267 VAL C 268 GLU C 270 GLY C 271 SITE 6 AC3 26 ILE C 272 HOH C2076 HOH C2077 HOH C2079 SITE 7 AC3 26 HOH C2080 HOH C2081 SITE 1 AC4 25 ARG D 64 ALA D 65 TYR D 66 SER D 67 SITE 2 AC4 25 TYR D 80 SER D 81 ILE D 82 GLY D 87 SITE 3 AC4 25 PRO D 88 LEU D 89 THR D 90 THR D 130 SITE 4 AC4 25 ALA D 133 LYS D 265 ALA D 266 PHE D 267 SITE 5 AC4 25 VAL D 268 GLU D 270 GLY D 271 ILE D 272 SITE 6 AC4 25 HOH D2018 HOH D2091 HOH D2092 HOH D2093 SITE 7 AC4 25 HOH D2094 CRYST1 69.290 93.626 103.427 90.00 90.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014432 0.000000 0.000020 0.00000 SCALE2 0.000000 0.010681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009669 0.00000 MTRIX1 1 -1.000000 0.000030 -0.000010 34.53708 1 MTRIX2 1 0.000030 1.000000 -0.000020 -0.02099 1 MTRIX3 1 0.000010 -0.000020 -1.000000 56.93575 1 MTRIX1 2 0.999960 0.006850 -0.004840 0.36732 1 MTRIX2 2 0.006860 -0.999970 0.001920 35.11992 1 MTRIX3 2 -0.004830 -0.001950 -0.999990 51.93135 1 MTRIX1 3 -0.999960 -0.006880 0.004830 34.19625 1 MTRIX2 3 0.006890 -0.999970 0.001940 35.11736 1 MTRIX3 3 0.004820 0.001970 0.999990 -5.44410 1