PDB Short entry for 2BIJ HEADER HYDROLASE 21-JAN-05 2BIJ TITLE CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5 TITLE 2 (STEP, STRIATUM ENRICHED ENRICHED PHOSPHATASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE, NON-RECEPTOR TYPE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 258-539; COMPND 5 SYNONYM: HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIC SGC KEYWDS PTPN5, STEP, PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BARR,J.E.DEBRECZENI,J.ESWARAN,C.SMEE,N.BURGESS,O.GILEADI, AUTHOR 2 M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,S.KNAPP,F.VON DELFT REVDAT 7 13-DEC-23 2BIJ 1 REMARK REVDAT 6 23-OCT-19 2BIJ 1 SEQADV REVDAT 5 28-FEB-18 2BIJ 1 SOURCE JRNL REVDAT 4 13-JUL-11 2BIJ 1 VERSN REVDAT 3 24-FEB-09 2BIJ 1 VERSN REVDAT 2 13-MAY-08 2BIJ 1 VERSN AUTHOR JRNL REVDAT 1 17-MAR-05 2BIJ 0 JRNL AUTH J.ESWARAN,J.P.VON KRIES,B.MARSDEN,E.LONGMAN,J.E.DEBRECZENI, JRNL AUTH 2 E.UGOCHUKWU,A.TURNBULL,W.H.LEE,S.KNAPP,A.J.BARR JRNL TITL CRYSTAL STRUCTURES AND INHIBITOR IDENTIFICATION FOR PTPN5, JRNL TITL 2 PTPRR AND PTPN7: A FAMILY OF HUMAN MAPK-SPECIFIC PROTEIN JRNL TITL 3 TYROSINE PHOSPHATASES. JRNL REF BIOCHEM. J. V. 395 483 2006 JRNL REFN ESSN 1470-8728 JRNL PMID 16441242 JRNL DOI 10.1042/BJ20051931 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 19570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.71000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2335 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2072 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3179 ; 1.484 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4821 ; 0.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;35.380 ;24.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;15.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.143 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 463 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2091 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1128 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1348 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.330 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.022 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2318 ; 1.241 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1000 ; 1.889 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 861 ; 2.985 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3326 -9.1959 -10.9622 REMARK 3 T TENSOR REMARK 3 T11: -0.0653 T22: -0.0433 REMARK 3 T33: -0.0399 T12: -0.0142 REMARK 3 T13: -0.0098 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.8989 L22: 1.1249 REMARK 3 L33: 1.9192 L12: -0.3432 REMARK 3 L13: -0.5071 L23: 0.3928 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: -0.0273 S13: -0.0653 REMARK 3 S21: 0.0742 S22: 0.0448 S23: 0.0954 REMARK 3 S31: 0.1127 S32: 0.0193 S33: 0.0117 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 380-382 ARE DISORDERED AND NOT VISIBLE IN REMARK 3 THE ELECTRON DENSITY. REMARK 4 REMARK 4 2BIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290022582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 MG/ML PTPN5, 50 REMARK 280 MM HEPES PH 7.5, 200 MM NACL, 10 MM DTT PRECIPITANT: 25% PEG3350, REMARK 280 0.2 M LI2SO4, 100 MM BIS-TR-S PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.90400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.53850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.15900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.53850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.90400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.15900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 MET A 380 REMARK 465 ASN A 381 REMARK 465 GLU A 382 REMARK 465 GLN A 538 REMARK 465 SER A 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -7 CG OD1 ND2 REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 GLN A -3 CD OE1 NE2 REMARK 470 ARG A 300 NE CZ NH1 NH2 REMARK 470 LYS A 305 CD CE NZ REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 GLU A 390 CG CD OE1 OE2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 LYS A 404 CD CE NZ REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 THR A 422 OG1 CG2 REMARK 470 ASP A 437 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 294 68.45 -107.30 REMARK 500 GLU A 391 -58.79 -138.28 REMARK 500 LYS A 404 140.25 -172.06 REMARK 500 ILE A 515 93.97 65.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1538 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES ASP 289, LEU 298, VAL 299 AND THR 517 ARE GIVEN AS REMARK 999 VARIANTS IN THE SWISS-PROT ENTRY FOR P54829. RESIDUES -23 REMARK 999 TO -1 FORM PART OF A N-TERMINAL HIS-TAG USED FOR EXPRESSION DBREF 2BIJ A -23 -1 PDB 2BIJ 2BIJ -23 -1 DBREF 2BIJ A 258 539 UNP P54829 PTN5_HUMAN 258 539 SEQADV 2BIJ ASP A 289 UNP P54829 VAL 289 VARIANT SEQADV 2BIJ LEU A 298 UNP P54829 ARG 298 VARIANT SEQADV 2BIJ VAL A 299 UNP P54829 CYS 299 VARIANT SEQADV 2BIJ THR A 517 UNP P54829 HIS 517 VARIANT SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 305 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER ARG VAL SEQRES 3 A 305 LEU GLN ALA GLU GLU LEU HIS GLU LYS ALA LEU ASP PRO SEQRES 4 A 305 PHE LEU LEU GLN ALA GLU PHE PHE GLU ILE PRO MET ASN SEQRES 5 A 305 PHE VAL ASP PRO LYS GLU TYR ASP ILE PRO GLY LEU VAL SEQRES 6 A 305 ARG LYS ASN ARG TYR LYS THR ILE LEU PRO ASN PRO HIS SEQRES 7 A 305 SER ARG VAL CYS LEU THR SER PRO ASP PRO ASP ASP PRO SEQRES 8 A 305 LEU SER SER TYR ILE ASN ALA ASN TYR ILE ARG GLY TYR SEQRES 9 A 305 GLY GLY GLU GLU LYS VAL TYR ILE ALA THR GLN GLY PRO SEQRES 10 A 305 ILE VAL SER THR VAL ALA ASP PHE TRP ARG MET VAL TRP SEQRES 11 A 305 GLN GLU HIS THR PRO ILE ILE VAL MET ILE THR ASN ILE SEQRES 12 A 305 GLU GLU MET ASN GLU LYS CYS THR GLU TYR TRP PRO GLU SEQRES 13 A 305 GLU GLN VAL ALA TYR ASP GLY VAL GLU ILE THR VAL GLN SEQRES 14 A 305 LYS VAL ILE HIS THR GLU ASP TYR ARG LEU ARG LEU ILE SEQRES 15 A 305 SER LEU LYS SER GLY THR GLU GLU ARG GLY LEU LYS HIS SEQRES 16 A 305 TYR TRP PHE THR SER TRP PRO ASP GLN LYS THR PRO ASP SEQRES 17 A 305 ARG ALA PRO PRO LEU LEU HIS LEU VAL ARG GLU VAL GLU SEQRES 18 A 305 GLU ALA ALA GLN GLN GLU GLY PRO HIS CYS ALA PRO ILE SEQRES 19 A 305 ILE VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY CYS SEQRES 20 A 305 PHE ILE ALA THR SER ILE CYS CYS GLN GLN LEU ARG GLN SEQRES 21 A 305 GLU GLY VAL VAL ASP ILE LEU LYS THR THR CYS GLN LEU SEQRES 22 A 305 ARG GLN ASP ARG GLY GLY MET ILE GLN THR CYS GLU GLN SEQRES 23 A 305 TYR GLN PHE VAL HIS HIS VAL MET SER LEU TYR GLU LYS SEQRES 24 A 305 GLN LEU SER HIS GLN SER HET SO4 A1538 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *103(H2 O) HELIX 1 1 GLN A 262 ALA A 270 1 9 HELIX 2 2 ASP A 272 PHE A 281 1 10 HELIX 3 3 ASP A 289 TYR A 293 5 5 HELIX 4 4 GLY A 297 ASN A 302 5 6 HELIX 5 5 ASN A 310 HIS A 312 5 3 HELIX 6 6 ASP A 324 SER A 328 1 5 HELIX 7 7 GLY A 337 GLU A 341 5 5 HELIX 8 8 ILE A 352 SER A 354 5 3 HELIX 9 9 THR A 355 HIS A 367 1 13 HELIX 10 10 THR A 440 ARG A 443 5 4 HELIX 11 11 ALA A 444 GLN A 460 1 17 HELIX 12 12 ILE A 476 GLY A 496 1 21 HELIX 13 13 ASP A 499 ARG A 511 1 13 HELIX 14 14 THR A 517 SER A 536 1 20 SHEET 1 AA 9 ARG A 314 CYS A 316 0 SHEET 2 AA 9 TYR A 329 ILE A 335 -1 N ILE A 330 O VAL A 315 SHEET 3 AA 9 TYR A 345 GLN A 349 -1 O TYR A 345 N ILE A 335 SHEET 4 AA 9 ILE A 468 CYS A 472 1 O ILE A 468 N ILE A 346 SHEET 5 AA 9 ILE A 370 ILE A 374 1 O ILE A 370 N ILE A 469 SHEET 6 AA 9 GLU A 423 PHE A 432 1 O LYS A 428 N ILE A 371 SHEET 7 AA 9 TYR A 411 SER A 420 -1 O ARG A 412 N TRP A 431 SHEET 8 AA 9 VAL A 398 HIS A 407 -1 O GLU A 399 N LYS A 419 SHEET 9 AA 9 GLN A 392 TYR A 395 -1 O VAL A 393 N ILE A 400 CISPEP 1 SER A 319 PRO A 320 0 -1.62 SITE 1 AC1 5 TRP A 435 LYS A 439 ARG A 478 GLN A 520 SITE 2 AC1 5 HOH A2094 CRYST1 51.808 64.318 101.077 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009893 0.00000