PDB Short entry for 2BJM HEADER IMMUNE SYSTEM 04-FEB-05 2BJM TITLE SPE7:ANTHRONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGE SPE7 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN, RESIDUES 1-110; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IGE SPE7 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: HEAVY CHAIN, RESIDUES 1-120; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: ANTHRONE ATTACHED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM, ENCOUNTER COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.C.JAMES,D.S.TAWFIK REVDAT 4 30-OCT-13 2BJM 1 HEADER SOURCE KEYWDS REMARK REVDAT 4 2 VERSN REVDAT 3 24-FEB-09 2BJM 1 VERSN REVDAT 2 15-SEP-05 2BJM 1 JRNL REVDAT 1 18-AUG-05 2BJM 0 JRNL AUTH L.C.JAMES,D.S.TAWFIK JRNL TITL STRUCTURE AND KINETICS OF A TRANSIENT ANTIBODY JRNL TITL 2 BINDING INTERMEDIATE REVEAL A KINETIC JRNL TITL 3 DISCRIMINATION MECHANISM IN ANTIGEN RECOGNITION JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 12730 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16129832 JRNL DOI 10.1073/PNAS.0500909102 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 52.5 REMARK 3 NUMBER OF REFLECTIONS : 6123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 9.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 56.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.7870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.16100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.429 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.867 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.813 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1830 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3120 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 1.947 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7281 ; 3.145 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 8.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;36.279 ;23.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 281 ;21.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1383 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 858 ; 0.305 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3043 ; 0.241 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1135 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 17 ; 0.447 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 96 ; 0.448 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.311 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 1.866 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1818 ; 2.594 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 774 ; 3.729 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 674 ; 4.711 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2BJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-05. REMARK 100 THE PDBE ID CODE IS EBI-22830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.83600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.83600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.97900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.83600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.83600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.97900 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.83600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.83600 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.97900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 39.83600 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.83600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.97900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 79.67200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 79.67200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 79.67200 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 79.67200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 CB SER H 31 OG1 THR L 31 2675 2.20 REMARK 500 O GLY H 42 OG1 THR H 117 4565 2.14 REMARK 500 OH TYR H 102 OD1 ASN L 54 2675 2.05 REMARK 500 OG1 THR H 117 O GLY H 42 3655 2.14 REMARK 500 OG1 THR L 31 CB SER H 31 2675 2.20 REMARK 500 OD1 ASN L 54 OH TYR H 102 2675 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS H 65 C SER H 66 N -0.185 REMARK 500 TRP H 110 C GLY H 111 N 0.260 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS H 65 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG H 98 N - CA - C ANGL. DEV. = 20.3 DEGREES REMARK 500 ASP H 108 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP H 110 CA - C - N ANGL. DEV. = 12.1 DEGREES REMARK 500 TRP H 110 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 32 -156.27 -103.96 REMARK 500 TYR H 60 -139.24 -114.12 REMARK 500 GLU H 62 21.30 -66.58 REMARK 500 LYS H 65 -12.00 -42.50 REMARK 500 SER H 66 -93.98 -94.36 REMARK 500 SER H 77 92.86 84.29 REMARK 500 ALA H 92 -172.78 -171.14 REMARK 500 TRP H 100 -156.55 51.79 REMARK 500 TYR H 101 9.81 86.08 REMARK 500 TYR H 106 -164.73 61.78 REMARK 500 PRO L 42 146.27 -34.33 REMARK 500 THR L 53 -58.37 67.36 REMARK 500 TYR L 94 76.29 -112.82 REMARK 500 SER L 95 -51.47 75.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG H 98 22.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANF H 500 DBREF 2BJM L 1 110 PDB 2BJM 2BJM 1 110 DBREF 2BJM H 1 120 PDB 2BJM 2BJM 1 120 SEQRES 1 H 120 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 120 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 120 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 120 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 120 PRO ASN GLY GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 120 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 H 120 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 120 ALA VAL TYR TYR CYS ALA ARG MET TRP TYR TYR GLY THR SEQRES 9 H 120 TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 H 120 VAL SER SER SEQRES 1 L 110 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 110 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 110 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 110 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 110 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 110 GLY SER LEU ILE GLY ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 L 110 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 110 LEU TRP TYR SER ASN HIS LEU VAL PHE GLY GLY GLY THR SEQRES 9 L 110 LYS LEU THR VAL LEU GLU HET ANF H 500 15 HETNAM ANF ANTHRONE FORMUL 3 ANF C14 H10 O HELIX 1 1 THR H 87 SER H 91 5 5 HELIX 2 2 GLN L 81 GLU L 85 5 5 SHEET 1 HA 4 GLN H 3 GLN H 6 0 SHEET 2 HA 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 HA 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 HA 4 ALA H 68 ASP H 73 -1 O THR H 69 N GLN H 82 SHEET 1 HB 5 ALA H 9 VAL H 12 0 SHEET 2 HB 5 THR H 114 VAL H 118 1 O THR H 115 N GLU H 10 SHEET 3 HB 5 ALA H 92 ALA H 97 -1 O ALA H 92 N LEU H 116 SHEET 4 HB 5 HIS H 35 ARG H 40 -1 O HIS H 35 N ALA H 97 SHEET 5 HB 5 GLY H 44 TRP H 47 -1 O GLY H 44 N ARG H 40 SHEET 1 LA 4 VAL L 4 THR L 5 0 SHEET 2 LA 4 VAL L 18 SER L 24 -1 O ARG L 23 N THR L 5 SHEET 3 LA 4 LYS L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 4 LA 4 PHE L 64 ILE L 69 -1 O SER L 65 N THR L 76 SHEET 1 LB 6 ALA L 9 THR L 12 0 SHEET 2 LB 6 THR L 104 VAL L 108 1 O LYS L 105 N LEU L 10 SHEET 3 LB 6 ILE L 87 TRP L 93 -1 O TYR L 88 N THR L 104 SHEET 4 LB 6 ASN L 36 LYS L 41 -1 O ASN L 36 N ALA L 91 SHEET 5 LB 6 LEU L 45 GLY L 51 -1 O LEU L 45 N LYS L 41 SHEET 6 LB 6 ASN L 55 ARG L 56 -1 O ASN L 55 N GLY L 51 SHEET 1 LC 4 ALA L 9 THR L 12 0 SHEET 2 LC 4 THR L 104 VAL L 108 1 O LYS L 105 N LEU L 10 SHEET 3 LC 4 ILE L 87 TRP L 93 -1 O TYR L 88 N THR L 104 SHEET 4 LC 4 LEU L 98 PHE L 100 -1 O VAL L 99 N LEU L 92 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS L 22 CYS L 90 1555 1555 2.03 CISPEP 1 GLU H 1 VAL H 2 0 6.92 CISPEP 2 VAL H 118 SER H 119 0 -14.51 CISPEP 3 LEU L 109 GLU L 110 0 -11.09 SITE 1 AC1 5 TRP H 33 TYR H 101 TYR L 34 ASN L 36 SITE 2 AC1 5 TRP L 93 CRYST1 79.672 79.672 67.958 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014715 0.00000