PDB Short entry for 2BME HEADER PROTEIN TRANSPORT 13-MAR-05 2BME TITLE HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB4A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: NUCLEOTIDE-BINDING DOMAIN, RESIDUES 1-184; COMPND 5 SYNONYM: RAB4A; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19TEV KEYWDS GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS, PRENYLATION, KEYWDS 2 PROTEIN TRANSPORT, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.J.SCHEIDIG,S.K.HUBER REVDAT 4 08-MAY-19 2BME 1 REMARK REVDAT 3 24-FEB-09 2BME 1 VERSN REVDAT 2 25-MAY-05 2BME 1 JRNL REVDAT 1 25-APR-05 2BME 0 JRNL AUTH S.K.HUBER,A.J.SCHEIDIG JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN RAB4A IN ITS JRNL TITL 2 ACTIVE AND INACTIVE CONFORMATIONS. JRNL REF FEBS LETT. V. 579 2821 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 15907487 JRNL DOI 10.1016/J.FEBSLET.2005.04.020 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 122377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 684 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5726 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7728 ; 1.821 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 861 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4180 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2504 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 445 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 95 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3390 ; 1.022 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5426 ; 1.658 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 2.709 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2302 ; 4.205 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 65.6538 2.2742 0.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.0668 REMARK 3 T33: 0.0500 T12: 0.0045 REMARK 3 T13: -0.0220 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.1663 L22: 1.6168 REMARK 3 L33: 2.6802 L12: 0.1216 REMARK 3 L13: 0.0324 L23: -0.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.0089 S13: 0.0278 REMARK 3 S21: -0.0535 S22: 0.0100 S23: 0.0007 REMARK 3 S31: -0.1529 S32: 0.0330 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 84.1530 3.1730 28.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: 0.0224 REMARK 3 T33: 0.0414 T12: -0.0109 REMARK 3 T13: -0.0124 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.5719 L22: 1.6037 REMARK 3 L33: 1.9027 L12: -0.0573 REMARK 3 L13: -0.0108 L23: 0.6379 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0711 S13: -0.0507 REMARK 3 S21: -0.0298 S22: -0.0280 S23: 0.0523 REMARK 3 S31: -0.0285 S32: 0.0029 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 177 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8076 14.5741 -22.3992 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0590 REMARK 3 T33: 0.0689 T12: -0.0127 REMARK 3 T13: -0.0123 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.5590 L22: 1.6177 REMARK 3 L33: 2.1996 L12: -0.1045 REMARK 3 L13: 0.5068 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.0807 S13: 0.1035 REMARK 3 S21: 0.1053 S22: 0.0182 S23: -0.1075 REMARK 3 S31: 0.0071 S32: 0.1271 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 177 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6619 35.0960 6.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0549 REMARK 3 T33: 0.0929 T12: 0.0181 REMARK 3 T13: -0.0054 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.2890 L22: 1.5725 REMARK 3 L33: 3.4396 L12: 0.5663 REMARK 3 L13: -1.3387 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.0212 S13: -0.1851 REMARK 3 S21: -0.0544 S22: 0.0367 S23: -0.1212 REMARK 3 S31: 0.1657 S32: 0.0682 S33: 0.0351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 2BME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HUQ REMARK 200 REMARK 200 REMARK: USED MODEL WITHOUT NUCLEOTIDE, MAGNESIUM AND WATER REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (W/V) PEG 4000, 100MM SODIUM REMARK 280 ACETATE PH 4.0 HANGING DROP 25 DEGREE CELSIUS, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.77000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.65500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 LEU A 180 REMARK 465 ASP A 181 REMARK 465 PRO A 182 REMARK 465 GLU A 183 REMARK 465 ARG A 184 REMARK 465 MET A 185 REMARK 465 GLY A 186 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 MET B 3 REMARK 465 SER B 4 REMARK 465 GLY B 178 REMARK 465 GLU B 179 REMARK 465 LEU B 180 REMARK 465 ASP B 181 REMARK 465 PRO B 182 REMARK 465 GLU B 183 REMARK 465 ARG B 184 REMARK 465 MET B 185 REMARK 465 GLY B 186 REMARK 465 GLY C 1 REMARK 465 HIS C 2 REMARK 465 MET C 3 REMARK 465 GLY C 178 REMARK 465 GLU C 179 REMARK 465 LEU C 180 REMARK 465 ASP C 181 REMARK 465 PRO C 182 REMARK 465 GLU C 183 REMARK 465 ARG C 184 REMARK 465 MET C 185 REMARK 465 GLY C 186 REMARK 465 GLY D 1 REMARK 465 HIS D 2 REMARK 465 MET D 3 REMARK 465 GLY D 178 REMARK 465 GLU D 179 REMARK 465 LEU D 180 REMARK 465 ASP D 181 REMARK 465 PRO D 182 REMARK 465 GLU D 183 REMARK 465 ARG D 184 REMARK 465 MET D 185 REMARK 465 GLY D 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 ASP D 37 CB CG OD1 OD2 REMARK 470 VAL D 75 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 36 N ASP A 37 1.35 REMARK 500 O LYS D 36 N ASP D 37 1.45 REMARK 500 O HOH B 2128 O HOH B 2131 2.11 REMARK 500 O HOH A 2132 O HOH C 2009 2.14 REMARK 500 O HOH B 2014 O HOH B 2018 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 36 C ASP A 37 N 0.188 REMARK 500 LYS D 36 C ASP D 37 N -0.305 REMARK 500 VAL D 75 C THR D 76 N -0.156 REMARK 500 GLN D 114 C ASN D 115 N -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 36 CA - C - N ANGL. DEV. = 24.8 DEGREES REMARK 500 LYS A 36 O - C - N ANGL. DEV. = -65.1 DEGREES REMARK 500 LEU A 155 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 77 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU B 150 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG B 169 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LYS D 36 CA - C - N ANGL. DEV. = 33.5 DEGREES REMARK 500 LYS D 36 O - C - N ANGL. DEV. = -43.9 DEGREES REMARK 500 VAL D 75 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 THR D 76 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 GLN D 114 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 GLN D 114 O - C - N ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 7.18 -69.42 REMARK 500 ILE A 43 69.39 -111.77 REMARK 500 LEU A 127 32.55 -90.97 REMARK 500 ILE B 43 67.90 -107.79 REMARK 500 ALA C 112 -93.40 -97.49 REMARK 500 GLU D 5 156.84 155.49 REMARK 500 ASP D 38 14.27 102.27 REMARK 500 VAL D 75 42.46 -87.39 REMARK 500 THR D 76 -46.43 -176.22 REMARK 500 SER D 113 -34.87 138.94 REMARK 500 GLN D 114 -10.04 70.46 REMARK 500 LEU D 127 35.67 -97.99 REMARK 500 ASN D 159 13.72 59.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 36 ASP A 37 -136.79 REMARK 500 GLN D 114 ASN D 115 136.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 36 66.42 REMARK 500 LYS D 36 41.20 REMARK 500 ARG D 109 -10.97 REMARK 500 GLN D 114 12.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2019 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1184 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A1180 O2G REMARK 620 2 GNP A1180 O2B 92.2 REMARK 620 3 HOH A2032 O 89.9 87.4 REMARK 620 4 HOH A2063 O 93.6 92.8 176.5 REMARK 620 5 THR A 42 OG1 88.3 176.7 89.2 90.4 REMARK 620 6 SER A 24 OG 174.1 93.6 89.9 86.5 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1179 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP B1178 O2G REMARK 620 2 HOH B2040 O 92.9 REMARK 620 3 HOH B2093 O 93.6 173.3 REMARK 620 4 SER B 24 OG 173.7 86.8 86.9 REMARK 620 5 THR B 42 OG1 90.4 89.4 92.1 83.3 REMARK 620 6 GNP B1178 O2B 94.1 83.9 94.1 92.1 172.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1181 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP C1178 O2G REMARK 620 2 HOH C2068 O 93.9 REMARK 620 3 THR C 42 OG1 90.2 92.3 REMARK 620 4 HOH C2037 O 92.6 173.4 88.6 REMARK 620 5 GNP C1178 O2B 93.7 92.1 174.0 86.5 REMARK 620 6 SER C 24 OG 174.7 84.8 84.7 88.8 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP D1179 O2B REMARK 620 2 HOH D2066 O 92.7 REMARK 620 3 HOH D2036 O 88.6 175.2 REMARK 620 4 GNP D1179 O2G 93.1 90.1 94.5 REMARK 620 5 THR D 42 OG1 178.1 88.9 89.8 88.0 REMARK 620 6 SER D 24 OG 94.4 88.7 86.6 172.4 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP C1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP D1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME C1180 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMD RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF GDP-BOUND HUMAN RAB4A DBREF 2BME A 1 2 PDB 2BME 2BME 1 2 DBREF 2BME A 3 186 UNP P20338 RAB4A_HUMAN 1 184 DBREF 2BME B 1 2 PDB 2BME 2BME 1 2 DBREF 2BME B 3 186 UNP P20338 RAB4A_HUMAN 1 184 DBREF 2BME C 1 2 PDB 2BME 2BME 1 2 DBREF 2BME C 3 186 UNP P20338 RAB4A_HUMAN 1 184 DBREF 2BME D 1 2 PDB 2BME 2BME 1 2 DBREF 2BME D 3 186 UNP P20338 RAB4A_HUMAN 1 184 SEQRES 1 A 186 GLY HIS MET SER GLU THR TYR ASP PHE LEU PHE LYS PHE SEQRES 2 A 186 LEU VAL ILE GLY ASN ALA GLY THR GLY LYS SER CYS LEU SEQRES 3 A 186 LEU HIS GLN PHE ILE GLU LYS LYS PHE LYS ASP ASP SER SEQRES 4 A 186 ASN HIS THR ILE GLY VAL GLU PHE GLY SER LYS ILE ILE SEQRES 5 A 186 ASN VAL GLY GLY LYS TYR VAL LYS LEU GLN ILE TRP ASP SEQRES 6 A 186 THR ALA GLY GLN GLU ARG PHE ARG SER VAL THR ARG SER SEQRES 7 A 186 TYR TYR ARG GLY ALA ALA GLY ALA LEU LEU VAL TYR ASP SEQRES 8 A 186 ILE THR SER ARG GLU THR TYR ASN ALA LEU THR ASN TRP SEQRES 9 A 186 LEU THR ASP ALA ARG MET LEU ALA SER GLN ASN ILE VAL SEQRES 10 A 186 ILE ILE LEU CYS GLY ASN LYS LYS ASP LEU ASP ALA ASP SEQRES 11 A 186 ARG GLU VAL THR PHE LEU GLU ALA SER ARG PHE ALA GLN SEQRES 12 A 186 GLU ASN GLU LEU MET PHE LEU GLU THR SER ALA LEU THR SEQRES 13 A 186 GLY GLU ASN VAL GLU GLU ALA PHE VAL GLN CYS ALA ARG SEQRES 14 A 186 LYS ILE LEU ASN LYS ILE GLU SER GLY GLU LEU ASP PRO SEQRES 15 A 186 GLU ARG MET GLY SEQRES 1 B 186 GLY HIS MET SER GLU THR TYR ASP PHE LEU PHE LYS PHE SEQRES 2 B 186 LEU VAL ILE GLY ASN ALA GLY THR GLY LYS SER CYS LEU SEQRES 3 B 186 LEU HIS GLN PHE ILE GLU LYS LYS PHE LYS ASP ASP SER SEQRES 4 B 186 ASN HIS THR ILE GLY VAL GLU PHE GLY SER LYS ILE ILE SEQRES 5 B 186 ASN VAL GLY GLY LYS TYR VAL LYS LEU GLN ILE TRP ASP SEQRES 6 B 186 THR ALA GLY GLN GLU ARG PHE ARG SER VAL THR ARG SER SEQRES 7 B 186 TYR TYR ARG GLY ALA ALA GLY ALA LEU LEU VAL TYR ASP SEQRES 8 B 186 ILE THR SER ARG GLU THR TYR ASN ALA LEU THR ASN TRP SEQRES 9 B 186 LEU THR ASP ALA ARG MET LEU ALA SER GLN ASN ILE VAL SEQRES 10 B 186 ILE ILE LEU CYS GLY ASN LYS LYS ASP LEU ASP ALA ASP SEQRES 11 B 186 ARG GLU VAL THR PHE LEU GLU ALA SER ARG PHE ALA GLN SEQRES 12 B 186 GLU ASN GLU LEU MET PHE LEU GLU THR SER ALA LEU THR SEQRES 13 B 186 GLY GLU ASN VAL GLU GLU ALA PHE VAL GLN CYS ALA ARG SEQRES 14 B 186 LYS ILE LEU ASN LYS ILE GLU SER GLY GLU LEU ASP PRO SEQRES 15 B 186 GLU ARG MET GLY SEQRES 1 C 186 GLY HIS MET SER GLU THR TYR ASP PHE LEU PHE LYS PHE SEQRES 2 C 186 LEU VAL ILE GLY ASN ALA GLY THR GLY LYS SER CYS LEU SEQRES 3 C 186 LEU HIS GLN PHE ILE GLU LYS LYS PHE LYS ASP ASP SER SEQRES 4 C 186 ASN HIS THR ILE GLY VAL GLU PHE GLY SER LYS ILE ILE SEQRES 5 C 186 ASN VAL GLY GLY LYS TYR VAL LYS LEU GLN ILE TRP ASP SEQRES 6 C 186 THR ALA GLY GLN GLU ARG PHE ARG SER VAL THR ARG SER SEQRES 7 C 186 TYR TYR ARG GLY ALA ALA GLY ALA LEU LEU VAL TYR ASP SEQRES 8 C 186 ILE THR SER ARG GLU THR TYR ASN ALA LEU THR ASN TRP SEQRES 9 C 186 LEU THR ASP ALA ARG MET LEU ALA SER GLN ASN ILE VAL SEQRES 10 C 186 ILE ILE LEU CYS GLY ASN LYS LYS ASP LEU ASP ALA ASP SEQRES 11 C 186 ARG GLU VAL THR PHE LEU GLU ALA SER ARG PHE ALA GLN SEQRES 12 C 186 GLU ASN GLU LEU MET PHE LEU GLU THR SER ALA LEU THR SEQRES 13 C 186 GLY GLU ASN VAL GLU GLU ALA PHE VAL GLN CYS ALA ARG SEQRES 14 C 186 LYS ILE LEU ASN LYS ILE GLU SER GLY GLU LEU ASP PRO SEQRES 15 C 186 GLU ARG MET GLY SEQRES 1 D 186 GLY HIS MET SER GLU THR TYR ASP PHE LEU PHE LYS PHE SEQRES 2 D 186 LEU VAL ILE GLY ASN ALA GLY THR GLY LYS SER CYS LEU SEQRES 3 D 186 LEU HIS GLN PHE ILE GLU LYS LYS PHE LYS ASP ASP SER SEQRES 4 D 186 ASN HIS THR ILE GLY VAL GLU PHE GLY SER LYS ILE ILE SEQRES 5 D 186 ASN VAL GLY GLY LYS TYR VAL LYS LEU GLN ILE TRP ASP SEQRES 6 D 186 THR ALA GLY GLN GLU ARG PHE ARG SER VAL THR ARG SER SEQRES 7 D 186 TYR TYR ARG GLY ALA ALA GLY ALA LEU LEU VAL TYR ASP SEQRES 8 D 186 ILE THR SER ARG GLU THR TYR ASN ALA LEU THR ASN TRP SEQRES 9 D 186 LEU THR ASP ALA ARG MET LEU ALA SER GLN ASN ILE VAL SEQRES 10 D 186 ILE ILE LEU CYS GLY ASN LYS LYS ASP LEU ASP ALA ASP SEQRES 11 D 186 ARG GLU VAL THR PHE LEU GLU ALA SER ARG PHE ALA GLN SEQRES 12 D 186 GLU ASN GLU LEU MET PHE LEU GLU THR SER ALA LEU THR SEQRES 13 D 186 GLY GLU ASN VAL GLU GLU ALA PHE VAL GLN CYS ALA ARG SEQRES 14 D 186 LYS ILE LEU ASN LYS ILE GLU SER GLY GLU LEU ASP PRO SEQRES 15 D 186 GLU ARG MET GLY HET GNP A1180 32 HET TRS A1181 8 HET TRS A1182 8 HET BME A1183 4 HET MG A1184 1 HET GNP B1178 32 HET MG B1179 1 HET GNP C1178 32 HET TRS C1179 8 HET BME C1180 4 HET MG C1181 1 HET TRS D1178 8 HET GNP D1179 32 HET MG D1180 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM BME BETA-MERCAPTOETHANOL HETNAM MG MAGNESIUM ION HETSYN TRS TRIS BUFFER FORMUL 5 GNP 4(C10 H17 N6 O13 P3) FORMUL 6 TRS 4(C4 H12 N O3 1+) FORMUL 8 BME 2(C2 H6 O S) FORMUL 9 MG 4(MG 2+) FORMUL 19 HOH *684(H2 O) HELIX 1 1 GLY A 22 LYS A 33 1 12 HELIX 2 2 GLN A 69 ARG A 71 5 3 HELIX 3 3 PHE A 72 SER A 78 1 7 HELIX 4 4 SER A 94 ALA A 100 1 7 HELIX 5 5 ALA A 100 ALA A 112 1 13 HELIX 6 6 LYS A 124 ARG A 131 5 8 HELIX 7 7 THR A 134 ASN A 145 1 12 HELIX 8 8 ASN A 159 SER A 177 1 19 HELIX 9 9 GLY B 22 LYS B 33 1 12 HELIX 10 10 GLN B 69 ARG B 71 5 3 HELIX 11 11 PHE B 72 SER B 78 1 7 HELIX 12 12 SER B 94 ALA B 100 1 7 HELIX 13 13 ALA B 100 ALA B 112 1 13 HELIX 14 14 LYS B 124 ARG B 131 5 8 HELIX 15 15 THR B 134 ASN B 145 1 12 HELIX 16 16 ASN B 159 SER B 177 1 19 HELIX 17 17 GLY C 22 LYS C 33 1 12 HELIX 18 18 GLN C 69 ARG C 71 5 3 HELIX 19 19 PHE C 72 SER C 78 1 7 HELIX 20 20 SER C 94 ALA C 100 1 7 HELIX 21 21 ALA C 100 ALA C 112 1 13 HELIX 22 22 LYS C 124 ARG C 131 5 8 HELIX 23 23 THR C 134 ASN C 145 1 12 HELIX 24 24 ASN C 159 SER C 177 1 19 HELIX 25 25 GLY D 22 LYS D 33 1 12 HELIX 26 26 GLN D 69 PHE D 72 5 4 HELIX 27 27 ARG D 73 SER D 78 1 6 HELIX 28 28 SER D 94 ALA D 100 1 7 HELIX 29 29 ALA D 100 SER D 113 1 14 HELIX 30 30 LYS D 124 ARG D 131 5 8 HELIX 31 31 THR D 134 ASN D 145 1 12 HELIX 32 32 ASN D 159 SER D 177 1 19 SHEET 1 AA12 MET A 148 GLU A 151 0 SHEET 2 AA12 VAL A 117 ASN A 123 1 O ILE A 118 N MET A 148 SHEET 3 AA12 GLY A 85 ASP A 91 1 O ALA A 86 N ILE A 119 SHEET 4 AA12 PHE A 9 GLY A 17 1 O LEU A 14 N LEU A 87 SHEET 5 AA12 LYS A 57 THR A 66 1 O LYS A 60 N PHE A 11 SHEET 6 AA12 GLY A 44 VAL A 54 -1 O GLU A 46 N ASP A 65 SHEET 7 AA12 GLY B 44 VAL B 54 -1 O VAL B 45 N VAL A 45 SHEET 8 AA12 LYS B 57 THR B 66 -1 O LYS B 57 N VAL B 54 SHEET 9 AA12 PHE B 9 GLY B 17 1 O PHE B 9 N LYS B 60 SHEET 10 AA12 GLY B 85 ASP B 91 1 O GLY B 85 N LEU B 14 SHEET 11 AA12 VAL B 117 ASN B 123 1 O VAL B 117 N ALA B 86 SHEET 12 AA12 MET B 148 GLU B 151 1 O MET B 148 N LEU B 120 SHEET 1 CA 6 VAL C 45 VAL C 54 0 SHEET 2 CA 6 LYS C 57 THR C 66 -1 O LYS C 57 N VAL C 54 SHEET 3 CA 6 PHE C 9 GLY C 17 1 O PHE C 9 N LYS C 60 SHEET 4 CA 6 GLY C 85 ASP C 91 1 O GLY C 85 N LEU C 14 SHEET 5 CA 6 VAL C 117 ASN C 123 1 O VAL C 117 N ALA C 86 SHEET 6 CA 6 MET C 148 GLU C 151 1 O MET C 148 N LEU C 120 SHEET 1 DA 6 VAL D 45 VAL D 54 0 SHEET 2 DA 6 LYS D 57 THR D 66 -1 O LYS D 57 N VAL D 54 SHEET 3 DA 6 PHE D 9 GLY D 17 1 O PHE D 9 N LYS D 60 SHEET 4 DA 6 GLY D 85 ASP D 91 1 O GLY D 85 N LEU D 14 SHEET 5 DA 6 VAL D 117 ASN D 123 1 O VAL D 117 N ALA D 86 SHEET 6 DA 6 MET D 148 GLU D 151 1 O MET D 148 N LEU D 120 LINK O2G GNP A1180 MG MG A1184 1555 1555 2.04 LINK O2B GNP A1180 MG MG A1184 1555 1555 1.98 LINK MG MG A1184 O HOH A2032 1555 1555 2.02 LINK MG MG A1184 O HOH A2063 1555 1555 2.08 LINK MG MG A1184 OG1 THR A 42 1555 1555 2.22 LINK MG MG A1184 OG SER A 24 1555 1555 2.06 LINK O2G GNP B1178 MG MG B1179 1555 1555 1.99 LINK MG MG B1179 O HOH B2040 1555 1555 2.10 LINK MG MG B1179 O HOH B2093 1555 1555 2.05 LINK MG MG B1179 OG SER B 24 1555 1555 2.21 LINK MG MG B1179 OG1 THR B 42 1555 1555 2.12 LINK MG MG B1179 O2B GNP B1178 1555 1555 2.10 LINK O2G GNP C1178 MG MG C1181 1555 1555 1.99 LINK MG MG C1181 O HOH C2068 1555 1555 2.10 LINK MG MG C1181 OG1 THR C 42 1555 1555 2.11 LINK MG MG C1181 O HOH C2037 1555 1555 2.08 LINK MG MG C1181 O2B GNP C1178 1555 1555 2.12 LINK MG MG C1181 OG SER C 24 1555 1555 2.17 LINK O2B GNP D1179 MG MG D1180 1555 1555 2.04 LINK MG MG D1180 O HOH D2066 1555 1555 2.11 LINK MG MG D1180 O HOH D2036 1555 1555 2.10 LINK MG MG D1180 O2G GNP D1179 1555 1555 2.08 LINK MG MG D1180 OG1 THR D 42 1555 1555 2.17 LINK MG MG D1180 OG SER D 24 1555 1555 2.02 SITE 1 AC1 5 SER A 24 THR A 42 GNP A1180 HOH A2032 SITE 2 AC1 5 HOH A2063 SITE 1 AC2 5 SER B 24 THR B 42 GNP B1178 HOH B2040 SITE 2 AC2 5 HOH B2093 SITE 1 AC3 5 SER C 24 THR C 42 GNP C1178 HOH C2037 SITE 2 AC3 5 HOH C2068 SITE 1 AC4 5 SER D 24 THR D 42 GNP D1179 HOH D2036 SITE 2 AC4 5 HOH D2066 SITE 1 AC5 26 ALA A 19 GLY A 20 THR A 21 GLY A 22 SITE 2 AC5 26 LYS A 23 SER A 24 CYS A 25 PHE A 35 SITE 3 AC5 26 SER A 39 HIS A 41 THR A 42 GLY A 68 SITE 4 AC5 26 ASN A 123 LYS A 124 ASP A 126 LEU A 127 SITE 5 AC5 26 SER A 153 ALA A 154 LEU A 155 MG A1184 SITE 6 AC5 26 HOH A2027 HOH A2032 HOH A2063 HOH A2155 SITE 7 AC5 26 HOH A2156 HOH A2157 SITE 1 AC6 13 LEU A 150 GLU A 151 GLU A 158 ASN A 159 SITE 2 AC6 13 HOH A2134 HOH A2158 HOH A2159 HOH A2160 SITE 3 AC6 13 LEU C 10 LYS C 12 GLN C 62 GLY C 82 SITE 4 AC6 13 HOH C2092 SITE 1 AC7 5 PHE A 47 SER A 49 LYS A 60 GLN A 62 SITE 2 AC7 5 ARG B 71 SITE 1 AC8 29 ALA B 19 GLY B 20 THR B 21 GLY B 22 SITE 2 AC8 29 LYS B 23 SER B 24 CYS B 25 PHE B 35 SITE 3 AC8 29 LYS B 36 SER B 39 HIS B 41 THR B 42 SITE 4 AC8 29 GLY B 68 ASN B 123 LYS B 124 ASP B 126 SITE 5 AC8 29 LEU B 127 SER B 153 ALA B 154 LEU B 155 SITE 6 AC8 29 MG B1179 HOH B2035 HOH B2040 HOH B2093 SITE 7 AC8 29 HOH B2209 HOH B2210 HOH B2211 HOH B2212 SITE 8 AC8 29 HOH B2213 SITE 1 AC9 30 ALA C 19 GLY C 20 THR C 21 GLY C 22 SITE 2 AC9 30 LYS C 23 SER C 24 CYS C 25 PHE C 35 SITE 3 AC9 30 SER C 39 HIS C 41 THR C 42 GLY C 68 SITE 4 AC9 30 ASN C 123 LYS C 124 ASP C 126 LEU C 127 SITE 5 AC9 30 SER C 153 ALA C 154 LEU C 155 MG C1181 SITE 6 AC9 30 HOH C2030 HOH C2037 HOH C2068 HOH C2161 SITE 7 AC9 30 HOH C2162 HOH C2163 HOH C2164 HOH C2165 SITE 8 AC9 30 HOH C2166 HOH C2167 SITE 1 BC1 12 LEU A 10 PHE A 11 LYS A 12 GLY A 82 SITE 2 BC1 12 LYS C 125 PHE C 135 GLU C 151 ASN C 159 SITE 3 BC1 12 HOH C2146 HOH C2168 HOH C2169 HOH C2170 SITE 1 BC2 10 LEU D 10 PHE D 11 LYS D 12 GLY D 82 SITE 2 BC2 10 LYS D 125 PHE D 135 GLU D 151 ASN D 159 SITE 3 BC2 10 HOH D2118 HOH D2136 SITE 1 BC3 27 ALA D 19 GLY D 20 THR D 21 GLY D 22 SITE 2 BC3 27 LYS D 23 SER D 24 CYS D 25 PHE D 35 SITE 3 BC3 27 SER D 39 HIS D 41 THR D 42 GLY D 68 SITE 4 BC3 27 ASN D 123 LYS D 124 ASP D 126 LEU D 127 SITE 5 BC3 27 SER D 153 ALA D 154 LEU D 155 MG D1180 SITE 6 BC3 27 HOH D2033 HOH D2036 HOH D2038 HOH D2066 SITE 7 BC3 27 HOH D2137 HOH D2138 HOH D2139 SITE 1 BC4 5 LEU A 147 MET A 148 HOH A2132 HOH A2162 SITE 2 BC4 5 ASP C 8 SITE 1 BC5 3 GLN C 69 GLU C 70 ARG C 71 CRYST1 99.790 99.790 95.540 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010467 0.00000