PDB Short entry for 2BPI HEADER OXIDOREDUCTASE 20-APR-05 2BPI TITLE STRUCTURE OF IRON DEPENDENT SUPEROXIDE DISMUTASE FROM P. FALCIPARUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FE-SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 28C KEYWDS DISMUTASE, OXIDOREDUCTASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.W.BOUCHER,J.BRANNIGAN,A.J.WILKINSON,M.BRZOZOWSKI REVDAT 6 13-DEC-23 2BPI 1 REMARK LINK REVDAT 5 04-MAR-20 2BPI 1 REMARK REVDAT 4 15-APR-15 2BPI 1 AUTHOR REVDAT 3 24-APR-13 2BPI 1 TITLE REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2BPI 1 VERSN REVDAT 1 11-OCT-06 2BPI 0 JRNL AUTH I.W.BOUCHER,A.M.BRZOZOWSKI,J.A.BRANNIGAN,C.SCHNICK, JRNL AUTH 2 D.J.SMITH,S.A.KYES,A.J.WILKINSON JRNL TITL THE CRYSTAL STRUCTURE OF SUPEROXIDE DISMUTASE FROM JRNL TITL 2 PLASMODIUM FALCIPARUM. JRNL REF BMC STRUCT.BIOL. V. 6 20 2006 JRNL REFN ESSN 1472-6807 JRNL PMID 17020617 JRNL DOI 10.1186/1472-6807-6-20 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 843 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 6.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3262 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4442 ; 1.453 ; 1.901 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 6.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;36.632 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;18.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.211 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2560 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1624 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2208 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2003 ; 0.689 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3134 ; 1.189 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 1.695 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1308 ; 2.542 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290021292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97600 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ISC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7.5,38% PEG 600, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.97050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.31050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.31050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 198 REMARK 465 GLU A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 MET B 0 REMARK 465 LEU B 198 REMARK 465 GLU B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CG CD CE NZ REMARK 480 LYS A 43 CD CE NZ REMARK 480 ASP A 44 CB CG OD1 OD2 REMARK 480 LYS A 50 CG CD CE NZ REMARK 480 LYS A 176 CD CE NZ REMARK 480 LYS A 193 CD CE NZ REMARK 480 LYS B 37 CE NZ REMARK 480 LYS B 43 CD CE NZ REMARK 480 LYS B 50 CG CD CE NZ REMARK 480 GLU B 91 CD OE1 OE2 REMARK 480 LYS B 176 CE NZ REMARK 480 GLN B 196 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 91 CG GLU B 91 CD -0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -66.38 -102.47 REMARK 500 LYS A 43 -72.44 -13.84 REMARK 500 CYS A 84 -140.29 -124.10 REMARK 500 ASP A 140 -112.82 57.83 REMARK 500 ARG A 168 -130.67 48.44 REMARK 500 LYS B 29 -69.75 -104.57 REMARK 500 LYS B 43 -65.99 -27.28 REMARK 500 CYS B 84 -151.62 -123.64 REMARK 500 ASN B 128 -161.84 -79.56 REMARK 500 ASP B 140 -112.32 57.94 REMARK 500 TYR B 163 -10.10 -142.65 REMARK 500 ARG B 168 -135.23 49.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2013 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2014 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1198 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 73 NE2 88.8 REMARK 620 3 ASP A 157 OD2 85.5 106.5 REMARK 620 4 HIS A 161 NE2 99.8 127.6 125.6 REMARK 620 5 HOH A2055 O 167.5 94.0 82.0 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1198 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 73 NE2 95.9 REMARK 620 3 ASP B 157 OD2 90.9 110.7 REMARK 620 4 HIS B 161 NE2 93.8 133.2 114.8 REMARK 620 5 HOH B2054 O 170.6 80.7 82.2 94.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 1198 DBREF 2BPI A 0 197 UNP Q8IAY6 Q8IAY6_PLAF7 1 198 DBREF 2BPI A 198 205 PDB 2BPI 2BPI 198 205 DBREF 2BPI B 0 197 UNP Q8IAY6 Q8IAY6_PLAF7 1 198 DBREF 2BPI B 198 205 PDB 2BPI 2BPI 198 205 SEQRES 1 A 206 MET VAL ILE THR LEU PRO LYS LEU LYS TYR ALA LEU ASN SEQRES 2 A 206 ALA LEU SER PRO HIS ILE SER GLU GLU THR LEU ASN PHE SEQRES 3 A 206 HIS TYR ASN LYS HIS HIS ALA GLY TYR VAL ASN LYS LEU SEQRES 4 A 206 ASN THR LEU ILE LYS ASP THR PRO PHE ALA GLU LYS SER SEQRES 5 A 206 LEU LEU ASP ILE VAL LYS GLU SER SER GLY ALA ILE PHE SEQRES 6 A 206 ASN ASN ALA ALA GLN ILE TRP ASN HIS THR PHE TYR TRP SEQRES 7 A 206 ASP SER MET GLY PRO ASP CYS GLY GLY GLU PRO HIS GLY SEQRES 8 A 206 GLU ILE LYS GLU LYS ILE GLN GLU ASP PHE GLY SER PHE SEQRES 9 A 206 ASN ASN PHE LYS GLU GLN PHE SER ASN ILE LEU CYS GLY SEQRES 10 A 206 HIS PHE GLY SER GLY TRP GLY TRP LEU ALA LEU ASN ASN SEQRES 11 A 206 ASN ASN LYS LEU VAL ILE LEU GLN THR HIS ASP ALA GLY SEQRES 12 A 206 ASN PRO ILE LYS ASP ASN THR GLY ILE PRO ILE LEU THR SEQRES 13 A 206 CYS ASP ILE TRP GLU HIS ALA TYR TYR ILE ASP TYR ARG SEQRES 14 A 206 ASN ASP ARG ALA SER TYR VAL LYS ALA TRP TRP ASN LEU SEQRES 15 A 206 VAL ASN TRP ASN PHE ALA ASN GLU ASN LEU LYS LYS ALA SEQRES 16 A 206 MET GLN LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 206 MET VAL ILE THR LEU PRO LYS LEU LYS TYR ALA LEU ASN SEQRES 2 B 206 ALA LEU SER PRO HIS ILE SER GLU GLU THR LEU ASN PHE SEQRES 3 B 206 HIS TYR ASN LYS HIS HIS ALA GLY TYR VAL ASN LYS LEU SEQRES 4 B 206 ASN THR LEU ILE LYS ASP THR PRO PHE ALA GLU LYS SER SEQRES 5 B 206 LEU LEU ASP ILE VAL LYS GLU SER SER GLY ALA ILE PHE SEQRES 6 B 206 ASN ASN ALA ALA GLN ILE TRP ASN HIS THR PHE TYR TRP SEQRES 7 B 206 ASP SER MET GLY PRO ASP CYS GLY GLY GLU PRO HIS GLY SEQRES 8 B 206 GLU ILE LYS GLU LYS ILE GLN GLU ASP PHE GLY SER PHE SEQRES 9 B 206 ASN ASN PHE LYS GLU GLN PHE SER ASN ILE LEU CYS GLY SEQRES 10 B 206 HIS PHE GLY SER GLY TRP GLY TRP LEU ALA LEU ASN ASN SEQRES 11 B 206 ASN ASN LYS LEU VAL ILE LEU GLN THR HIS ASP ALA GLY SEQRES 12 B 206 ASN PRO ILE LYS ASP ASN THR GLY ILE PRO ILE LEU THR SEQRES 13 B 206 CYS ASP ILE TRP GLU HIS ALA TYR TYR ILE ASP TYR ARG SEQRES 14 B 206 ASN ASP ARG ALA SER TYR VAL LYS ALA TRP TRP ASN LEU SEQRES 15 B 206 VAL ASN TRP ASN PHE ALA ASN GLU ASN LEU LYS LYS ALA SEQRES 16 B 206 MET GLN LYS LEU GLU HIS HIS HIS HIS HIS HIS HET FE A1198 1 HET FE B1198 1 HETNAM FE FE (III) ION FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *140(H2 O) HELIX 1 1 SER A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 LYS A 43 1 15 HELIX 3 3 SER A 51 SER A 59 1 9 HELIX 4 4 SER A 60 SER A 79 1 20 HELIX 5 5 GLY A 90 GLY A 101 1 12 HELIX 6 6 SER A 102 HIS A 117 1 16 HELIX 7 7 TRP A 159 ALA A 162 5 4 HELIX 8 8 TYR A 163 ARG A 168 1 6 HELIX 9 9 ASP A 170 TRP A 179 1 10 HELIX 10 10 ASN A 183 LYS A 197 1 15 HELIX 11 11 SER B 19 LYS B 29 1 11 HELIX 12 12 LYS B 29 LYS B 43 1 15 HELIX 13 13 THR B 45 GLU B 49 5 5 HELIX 14 14 SER B 51 SER B 59 1 9 HELIX 15 15 SER B 60 SER B 79 1 20 HELIX 16 16 GLY B 90 GLY B 101 1 12 HELIX 17 17 SER B 102 GLY B 116 1 15 HELIX 18 18 ASN B 143 ASN B 148 1 6 HELIX 19 19 TRP B 159 ALA B 162 5 4 HELIX 20 20 TYR B 163 ARG B 168 1 6 HELIX 21 21 ASP B 170 TRP B 179 1 10 HELIX 22 22 ASN B 183 LYS B 197 1 15 SHEET 1 AA 3 LEU A 133 HIS A 139 0 SHEET 2 AA 3 GLY A 121 LEU A 127 -1 O TRP A 122 N THR A 138 SHEET 3 AA 3 ILE A 151 ASP A 157 -1 O ILE A 151 N LEU A 127 SHEET 1 BA 3 LEU B 133 HIS B 139 0 SHEET 2 BA 3 GLY B 121 LEU B 127 -1 O TRP B 122 N THR B 138 SHEET 3 BA 3 ILE B 151 ASP B 157 -1 O ILE B 151 N LEU B 127 LINK NE2 HIS A 26 FE FE A1198 1555 1555 2.29 LINK NE2 HIS A 73 FE FE A1198 1555 1555 2.10 LINK OD2 ASP A 157 FE FE A1198 1555 1555 1.82 LINK NE2 HIS A 161 FE FE A1198 1555 1555 2.08 LINK FE FE A1198 O HOH A2055 1555 1555 2.15 LINK NE2 HIS B 26 FE FE B1198 1555 1555 2.07 LINK NE2 HIS B 73 FE FE B1198 1555 1555 2.13 LINK OD2 ASP B 157 FE FE B1198 1555 1555 2.03 LINK NE2 HIS B 161 FE FE B1198 1555 1555 2.02 LINK FE FE B1198 O HOH B2054 1555 1555 2.25 CISPEP 1 SER A 15 PRO A 16 0 0.85 CISPEP 2 SER B 15 PRO B 16 0 -15.85 SITE 1 AC1 5 HIS A 26 HIS A 73 ASP A 157 HIS A 161 SITE 2 AC1 5 HOH A2055 SITE 1 AC2 5 HIS B 26 HIS B 73 ASP B 157 HIS B 161 SITE 2 AC2 5 HOH B2054 CRYST1 55.941 78.910 90.621 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011035 0.00000 MTRIX1 1 -0.999820 0.010060 -0.016290 48.63206 1 MTRIX2 1 -0.014930 0.123230 0.992270 -5.72955 1 MTRIX3 1 0.011990 0.992330 -0.123060 6.67508 1