PDB Short entry for 2BTY HEADER TRANSFERASE 08-JUN-05 2BTY TITLE ACETYLGLUTAMATE KINASE FROM THERMOTOGA MARITIMA COMPLEXED TITLE 2 WITH ITS INHIBITOR ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NAG KINASE, AGK, N-ACETYL-L-GLUTAMATE COMPND 5 5-PHOSPHOTRANSFERASE; COMPND 6 EC: 2.7.2.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNAGK-TM16 KEYWDS N-ACETYL-L-GLUTAMATE KINASE, AMINO ACID KINASE, PHOSPHORYL KEYWDS 2 GROUP TRANSFER, ARGININE METABOLISM, TRANSFERASE, ARGININE KEYWDS 3 BIOSYNTHESIS, AMINO-ACID BIOSYNTHESIS, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GIL-ORTIZ,M.L.FERNANDEZ-MURGA,I.FITA,V.RUBIO REVDAT 3 24-FEB-09 2BTY 1 VERSN REVDAT 2 01-FEB-06 2BTY 1 JRNL REVDAT 1 13-DEC-05 2BTY 0 SPRSDE 13-DEC-05 2BTY 1UVV JRNL AUTH S.RAMON-MAIQUES,M.L.FERNANDEZ-MURGA,F.GIL-ORTIZ, JRNL AUTH 2 A.VAGIN,I.FITA,V.RUBIO JRNL TITL STRUCTURAL BASES OF FEED-BACK CONTROL OF ARGININE JRNL TITL 2 BIOSYNTHESIS, REVEALED BY THE STRUCTURE OF TWO JRNL TITL 3 HEXAMERIC N-ACETYLGLUTAMATE KINASES, FROM JRNL TITL 4 THERMOTOGA MARITIMA AND PSEUDOMONAS AERUGINOSA JRNL REF J.MOL.BIOL. V. 356 695 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16376937 JRNL DOI 10.1016/J.JMB.2005.11.079 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2182059.08 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 30309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4684 REMARK 3 BIN R VALUE (WORKING SET) : 0.353 REMARK 3 BIN FREE R VALUE : 0.395 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.7 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 285 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.55 REMARK 3 B22 (A**2) : 8.01 REMARK 3 B33 (A**2) : -10.56 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.7 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.7 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.96 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.40 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.46 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.81 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.78 ; 2.5 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.324339 REMARK 3 BSOL : 30.8586 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ARI.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : AGL.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ARI.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : AGL.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BTY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-05. REMARK 100 THE PDBE ID CODE IS EBI-24386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% POLYETHYLENE GLYCOL 4K, REMARK 280 SODIUM ACETATE 50 MM PH 4.6, AMMONIUM SULFATE 75 MM REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.99800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.99800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.49900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 103.85450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.49900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.85450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.99800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.49900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 103.85450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.99800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.49900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 103.85450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.99800 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYSES CONVERSION OF ATP AND N-ACETYL-L-GLUTAMATE TO REMARK 400 ADP AND N-ACETYL-L-GLUTAMATE 5-PHOSPHATE. REMARK 400 PART OF THE SECOND STEP OF ARGININE BIOSYNTHESIS REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY) REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES; REMARK 475 C=CHAIN IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASN A 81 REMARK 475 VAL C 78 REMARK 475 PHE C 79 REMARK 475 LYS C 80 REMARK 475 ASN C 81 REMARK 475 GLY C 82 REMARK 475 HIS C 83 REMARK 475 ARG C 84 REMARK 475 GLU C 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 45 - O HOH B 2003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 282 C GLY A 282 OXT 0.193 REMARK 500 GLY B 282 C GLY B 282 OXT 0.243 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 81 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 ASN B 81 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN B 81 C - N - CA ANGL. DEV. = 18.6 DEGREES REMARK 500 GLY B 82 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 ASN B 81 CA - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY B 82 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 ASN C 81 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 2 -54.82 -19.07 REMARK 500 HIS A 83 -179.25 156.53 REMARK 500 ARG A 84 163.15 -40.73 REMARK 500 LYS A 101 -57.34 -129.25 REMARK 500 TYR A 141 50.49 -92.70 REMARK 500 PRO A 167 44.31 -65.73 REMARK 500 THR A 201 -160.45 -116.51 REMARK 500 ALA A 251 148.76 -178.68 REMARK 500 PHE A 268 31.00 -99.76 REMARK 500 ARG B 2 -70.91 -14.28 REMARK 500 LEU B 13 -46.65 -28.87 REMARK 500 SER B 31 -75.29 -12.48 REMARK 500 ALA B 32 8.82 -51.64 REMARK 500 LYS B 34 -83.75 -87.54 REMARK 500 HIS B 83 -165.78 156.96 REMARK 500 LYS B 101 -74.01 -118.84 REMARK 500 ASN B 111 5.85 -66.69 REMARK 500 ASP B 138 97.36 -60.72 REMARK 500 LYS B 147 144.85 -171.69 REMARK 500 PRO B 167 64.38 -68.60 REMARK 500 LYS B 208 34.83 -76.62 REMARK 500 LYS B 278 149.51 -171.01 REMARK 500 SER C 31 -74.62 -50.14 REMARK 500 LYS C 34 -74.46 -92.27 REMARK 500 GLU C 36 -34.17 -20.28 REMARK 500 MET C 70 -78.10 -56.43 REMARK 500 PRO C 77 102.76 -49.21 REMARK 500 LYS C 80 -65.91 -156.43 REMARK 500 HIS C 83 -152.22 151.86 REMARK 500 ARG C 84 -171.91 -66.72 REMARK 500 LYS C 101 -68.74 -108.60 REMARK 500 LYS C 132 124.61 -39.43 REMARK 500 LYS C 135 -2.57 -52.74 REMARK 500 PRO C 167 6.40 -56.98 REMARK 500 VAL C 203 144.31 178.75 REMARK 500 LEU C 259 104.05 -56.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 81 21.3 L L OUTSIDE RANGE REMARK 500 ASN C 81 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1285 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD1 REMARK 620 2 ASP A 160 OD2 37.8 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG C1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG A1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG B1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG C1284 DBREF 2BTY A 1 282 UNP Q9X2A4 ARGB_THEMA 1 282 DBREF 2BTY B 1 282 UNP Q9X2A4 ARGB_THEMA 1 282 DBREF 2BTY C 1 282 UNP Q9X2A4 ARGB_THEMA 1 282 SEQRES 1 A 282 MET ARG ILE ASP THR VAL ASN VAL LEU LEU GLU ALA LEU SEQRES 2 A 282 PRO TYR ILE LYS GLU PHE TYR GLY LYS THR PHE VAL ILE SEQRES 3 A 282 LYS PHE GLY GLY SER ALA MET LYS GLN GLU ASN ALA LYS SEQRES 4 A 282 LYS ALA PHE ILE GLN ASP ILE ILE LEU LEU LYS TYR THR SEQRES 5 A 282 GLY ILE LYS PRO ILE ILE VAL HIS GLY GLY GLY PRO ALA SEQRES 6 A 282 ILE SER GLN MET MET LYS ASP LEU GLY ILE GLU PRO VAL SEQRES 7 A 282 PHE LYS ASN GLY HIS ARG VAL THR ASP GLU LYS THR MET SEQRES 8 A 282 GLU ILE VAL GLU MET VAL LEU VAL GLY LYS ILE ASN LYS SEQRES 9 A 282 GLU ILE VAL MET ASN LEU ASN LEU HIS GLY GLY ARG ALA SEQRES 10 A 282 VAL GLY ILE CYS GLY LYS ASP SER LYS LEU ILE VAL ALA SEQRES 11 A 282 GLU LYS GLU THR LYS HIS GLY ASP ILE GLY TYR VAL GLY SEQRES 12 A 282 LYS VAL LYS LYS VAL ASN PRO GLU ILE LEU HIS ALA LEU SEQRES 13 A 282 ILE GLU ASN ASP TYR ILE PRO VAL ILE ALA PRO VAL GLY SEQRES 14 A 282 ILE GLY GLU ASP GLY HIS SER TYR ASN ILE ASN ALA ASP SEQRES 15 A 282 THR ALA ALA ALA GLU ILE ALA LYS SER LEU MET ALA GLU SEQRES 16 A 282 LYS LEU ILE LEU LEU THR ASP VAL ASP GLY VAL LEU LYS SEQRES 17 A 282 ASP GLY LYS LEU ILE SER THR LEU THR PRO ASP GLU ALA SEQRES 18 A 282 GLU GLU LEU ILE ARG ASP GLY THR VAL THR GLY GLY MET SEQRES 19 A 282 ILE PRO LYS VAL GLU CYS ALA VAL SER ALA VAL ARG GLY SEQRES 20 A 282 GLY VAL GLY ALA VAL HIS ILE ILE ASN GLY GLY LEU GLU SEQRES 21 A 282 HIS ALA ILE LEU LEU GLU ILE PHE SER ARG LYS GLY ILE SEQRES 22 A 282 GLY THR MET ILE LYS GLU LEU GLU GLY SEQRES 1 B 282 MET ARG ILE ASP THR VAL ASN VAL LEU LEU GLU ALA LEU SEQRES 2 B 282 PRO TYR ILE LYS GLU PHE TYR GLY LYS THR PHE VAL ILE SEQRES 3 B 282 LYS PHE GLY GLY SER ALA MET LYS GLN GLU ASN ALA LYS SEQRES 4 B 282 LYS ALA PHE ILE GLN ASP ILE ILE LEU LEU LYS TYR THR SEQRES 5 B 282 GLY ILE LYS PRO ILE ILE VAL HIS GLY GLY GLY PRO ALA SEQRES 6 B 282 ILE SER GLN MET MET LYS ASP LEU GLY ILE GLU PRO VAL SEQRES 7 B 282 PHE LYS ASN GLY HIS ARG VAL THR ASP GLU LYS THR MET SEQRES 8 B 282 GLU ILE VAL GLU MET VAL LEU VAL GLY LYS ILE ASN LYS SEQRES 9 B 282 GLU ILE VAL MET ASN LEU ASN LEU HIS GLY GLY ARG ALA SEQRES 10 B 282 VAL GLY ILE CYS GLY LYS ASP SER LYS LEU ILE VAL ALA SEQRES 11 B 282 GLU LYS GLU THR LYS HIS GLY ASP ILE GLY TYR VAL GLY SEQRES 12 B 282 LYS VAL LYS LYS VAL ASN PRO GLU ILE LEU HIS ALA LEU SEQRES 13 B 282 ILE GLU ASN ASP TYR ILE PRO VAL ILE ALA PRO VAL GLY SEQRES 14 B 282 ILE GLY GLU ASP GLY HIS SER TYR ASN ILE ASN ALA ASP SEQRES 15 B 282 THR ALA ALA ALA GLU ILE ALA LYS SER LEU MET ALA GLU SEQRES 16 B 282 LYS LEU ILE LEU LEU THR ASP VAL ASP GLY VAL LEU LYS SEQRES 17 B 282 ASP GLY LYS LEU ILE SER THR LEU THR PRO ASP GLU ALA SEQRES 18 B 282 GLU GLU LEU ILE ARG ASP GLY THR VAL THR GLY GLY MET SEQRES 19 B 282 ILE PRO LYS VAL GLU CYS ALA VAL SER ALA VAL ARG GLY SEQRES 20 B 282 GLY VAL GLY ALA VAL HIS ILE ILE ASN GLY GLY LEU GLU SEQRES 21 B 282 HIS ALA ILE LEU LEU GLU ILE PHE SER ARG LYS GLY ILE SEQRES 22 B 282 GLY THR MET ILE LYS GLU LEU GLU GLY SEQRES 1 C 282 MET ARG ILE ASP THR VAL ASN VAL LEU LEU GLU ALA LEU SEQRES 2 C 282 PRO TYR ILE LYS GLU PHE TYR GLY LYS THR PHE VAL ILE SEQRES 3 C 282 LYS PHE GLY GLY SER ALA MET LYS GLN GLU ASN ALA LYS SEQRES 4 C 282 LYS ALA PHE ILE GLN ASP ILE ILE LEU LEU LYS TYR THR SEQRES 5 C 282 GLY ILE LYS PRO ILE ILE VAL HIS GLY GLY GLY PRO ALA SEQRES 6 C 282 ILE SER GLN MET MET LYS ASP LEU GLY ILE GLU PRO VAL SEQRES 7 C 282 PHE LYS ASN GLY HIS ARG VAL THR ASP GLU LYS THR MET SEQRES 8 C 282 GLU ILE VAL GLU MET VAL LEU VAL GLY LYS ILE ASN LYS SEQRES 9 C 282 GLU ILE VAL MET ASN LEU ASN LEU HIS GLY GLY ARG ALA SEQRES 10 C 282 VAL GLY ILE CYS GLY LYS ASP SER LYS LEU ILE VAL ALA SEQRES 11 C 282 GLU LYS GLU THR LYS HIS GLY ASP ILE GLY TYR VAL GLY SEQRES 12 C 282 LYS VAL LYS LYS VAL ASN PRO GLU ILE LEU HIS ALA LEU SEQRES 13 C 282 ILE GLU ASN ASP TYR ILE PRO VAL ILE ALA PRO VAL GLY SEQRES 14 C 282 ILE GLY GLU ASP GLY HIS SER TYR ASN ILE ASN ALA ASP SEQRES 15 C 282 THR ALA ALA ALA GLU ILE ALA LYS SER LEU MET ALA GLU SEQRES 16 C 282 LYS LEU ILE LEU LEU THR ASP VAL ASP GLY VAL LEU LYS SEQRES 17 C 282 ASP GLY LYS LEU ILE SER THR LEU THR PRO ASP GLU ALA SEQRES 18 C 282 GLU GLU LEU ILE ARG ASP GLY THR VAL THR GLY GLY MET SEQRES 19 C 282 ILE PRO LYS VAL GLU CYS ALA VAL SER ALA VAL ARG GLY SEQRES 20 C 282 GLY VAL GLY ALA VAL HIS ILE ILE ASN GLY GLY LEU GLU SEQRES 21 C 282 HIS ALA ILE LEU LEU GLU ILE PHE SER ARG LYS GLY ILE SEQRES 22 C 282 GLY THR MET ILE LYS GLU LEU GLU GLY HET K A1285 1 HET ARG A1283 12 HET ARG B1283 12 HET ARG C1283 12 HET NLG A1284 13 HET NLG B1284 13 HET NLG C1284 13 HETNAM K POTASSIUM ION HETNAM ARG ARGININE HETNAM NLG N-ACETYL-L-GLUTAMATE FORMUL 4 K K 1+ FORMUL 5 ARG 3(C6 H15 N4 O2 1+) FORMUL 8 NLG 3(C7 H11 N O5) FORMUL 11 HOH *46(H2 O1) HELIX 1 1 ARG A 2 PHE A 19 1 17 HELIX 2 2 GLN A 35 TYR A 51 1 17 HELIX 3 3 GLY A 63 LEU A 73 1 11 HELIX 4 4 ASP A 87 LEU A 112 1 26 HELIX 5 5 PRO A 150 ASN A 159 1 10 HELIX 6 6 ASN A 180 LEU A 192 1 13 HELIX 7 7 THR A 217 ASP A 227 1 11 HELIX 8 8 GLY A 233 GLY A 247 1 15 HELIX 9 9 HIS A 261 PHE A 268 1 8 HELIX 10 10 ARG B 2 PHE B 19 1 17 HELIX 11 11 GLN B 35 TYR B 51 1 17 HELIX 12 12 GLY B 63 LEU B 73 1 11 HELIX 13 13 ASP B 87 LEU B 112 1 26 HELIX 14 14 PRO B 150 ASN B 159 1 10 HELIX 15 15 ASN B 180 LEU B 192 1 13 HELIX 16 16 THR B 217 ASP B 227 1 11 HELIX 17 17 GLY B 233 GLY B 247 1 15 HELIX 18 18 HIS B 261 PHE B 268 1 8 HELIX 19 19 ARG C 2 PHE C 19 1 17 HELIX 20 20 GLN C 35 TYR C 51 1 17 HELIX 21 21 GLY C 63 LEU C 73 1 11 HELIX 22 22 ASP C 87 LEU C 112 1 26 HELIX 23 23 PRO C 150 ASN C 159 1 10 HELIX 24 24 ASN C 180 LEU C 192 1 13 HELIX 25 25 THR C 217 ASP C 227 1 11 HELIX 26 26 GLY C 233 GLY C 247 1 15 HELIX 27 27 HIS C 261 PHE C 268 1 8 SHEET 1 AA 8 ARG A 116 ILE A 120 0 SHEET 2 AA 8 TYR A 161 ALA A 166 1 O ILE A 162 N VAL A 118 SHEET 3 AA 8 ILE A 54 HIS A 60 1 O ILE A 58 N ILE A 165 SHEET 4 AA 8 LYS A 22 PHE A 28 1 O PHE A 24 N ILE A 57 SHEET 5 AA 8 GLU A 195 THR A 201 1 O LYS A 196 N VAL A 25 SHEET 6 AA 8 GLY A 250 ASN A 256 1 O HIS A 253 N LEU A 199 SHEET 7 AA 8 GLY A 274 ILE A 277 -1 O THR A 275 N ILE A 254 SHEET 8 AA 8 SER A 214 LEU A 216 1 N LEU A 216 O MET A 276 SHEET 1 AB 2 LEU A 127 LYS A 132 0 SHEET 2 AB 2 VAL A 142 VAL A 148 -1 O LYS A 144 N GLU A 131 SHEET 1 AC 2 PRO A 167 ILE A 170 0 SHEET 2 AC 2 HIS A 175 ASN A 178 -1 O TYR A 177 N GLY A 169 SHEET 1 AD 2 VAL A 206 LEU A 207 0 SHEET 2 AD 2 LYS A 211 LEU A 212 -1 O LYS A 211 N LYS A 208 SHEET 1 BA 8 ARG B 116 ILE B 120 0 SHEET 2 BA 8 TYR B 161 ALA B 166 1 O ILE A 162 N VAL A 118 SHEET 3 BA 8 ILE B 54 HIS B 60 1 O ILE A 58 N ILE A 165 SHEET 4 BA 8 LYS B 22 PHE B 28 1 O PHE A 24 N ILE A 57 SHEET 5 BA 8 GLU B 195 THR B 201 1 O LYS A 196 N VAL A 25 SHEET 6 BA 8 GLY B 250 ASN B 256 1 O HIS A 253 N LEU A 199 SHEET 7 BA 8 GLY B 274 ILE B 277 -1 O THR A 275 N ILE A 254 SHEET 8 BA 8 SER B 214 LEU B 216 1 N LEU A 216 O MET A 276 SHEET 1 BB 2 LEU B 127 LYS B 132 0 SHEET 2 BB 2 VAL B 142 VAL B 148 -1 O LYS A 144 N GLU A 131 SHEET 1 BC 2 PRO B 167 ILE B 170 0 SHEET 2 BC 2 HIS B 175 ASN B 178 -1 O TYR A 177 N GLY A 169 SHEET 1 BD 2 VAL B 206 LEU B 207 0 SHEET 2 BD 2 LYS B 211 LEU B 212 -1 O LYS A 211 N LYS A 208 SHEET 1 CA 8 ARG C 116 ILE C 120 0 SHEET 2 CA 8 TYR C 161 ALA C 166 1 O ILE A 162 N VAL A 118 SHEET 3 CA 8 ILE C 54 HIS C 60 1 O ILE A 58 N ILE A 165 SHEET 4 CA 8 LYS C 22 PHE C 28 1 O PHE A 24 N ILE A 57 SHEET 5 CA 8 GLU C 195 THR C 201 1 O LYS A 196 N VAL A 25 SHEET 6 CA 8 GLY C 250 ASN C 256 1 O HIS A 253 N LEU A 199 SHEET 7 CA 8 GLY C 274 ILE C 277 -1 O THR A 275 N ILE A 254 SHEET 8 CA 8 SER C 214 LEU C 216 1 N LEU A 216 O MET A 276 SHEET 1 CB 2 LEU C 127 LYS C 132 0 SHEET 2 CB 2 VAL C 142 VAL C 148 -1 O LYS A 144 N GLU A 131 SHEET 1 CC 2 PRO C 167 ILE C 170 0 SHEET 2 CC 2 HIS C 175 ASN C 178 -1 O TYR A 177 N GLY A 169 SHEET 1 CD 2 VAL C 206 LEU C 207 0 SHEET 2 CD 2 LYS C 211 LEU C 212 -1 O LYS A 211 N LYS A 208 LINK K K A1285 OD1 ASP A 160 1555 1555 3.59 LINK K K A1285 OD2 ASP A 160 1555 1555 2.93 SITE 1 AC1 1 ASP A 160 SITE 1 AC2 12 TYR A 15 PHE A 19 LYS A 196 SER A 214 SITE 2 AC2 12 GLU A 266 ILE A 267 SER A 269 ARG A 270 SITE 3 AC2 12 LYS A 271 GLY A 274 MET A 276 HOH A2015 SITE 1 AC3 13 TYR B 15 PHE B 19 LYS B 196 SER B 214 SITE 2 AC3 13 THR B 215 GLU B 266 ILE B 267 SER B 269 SITE 3 AC3 13 ARG B 270 LYS B 271 GLY B 274 MET B 276 SITE 4 AC3 13 HOH B2015 SITE 1 AC4 12 PHE C 19 LYS C 196 SER C 214 THR C 215 SITE 2 AC4 12 GLU C 266 ILE C 267 SER C 269 ARG C 270 SITE 3 AC4 12 LYS C 271 GLY C 272 GLY C 274 MET C 276 SITE 1 AC5 7 LYS A 27 GLY A 29 GLY A 30 GLY A 61 SITE 2 AC5 7 GLY A 62 ASN A 180 ASP A 182 SITE 1 AC6 6 LYS B 27 GLY B 29 GLY B 30 GLY B 61 SITE 2 AC6 6 ASN B 180 ASP B 182 SITE 1 AC7 7 LYS C 27 GLY C 30 GLY C 61 GLY C 62 SITE 2 AC7 7 GLY C 63 ILE C 179 ASN C 180 CRYST1 94.998 207.709 117.996 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008475 0.00000 MTRIX1 1 -0.256300 0.602400 -0.755900 3.58760 1 MTRIX2 1 0.612400 -0.503800 -0.609000 35.72190 1 MTRIX3 1 -0.747800 -0.619100 -0.239800 32.88510 1 MTRIX1 2 0.276100 -0.591900 0.757300 -23.62320 1 MTRIX2 2 0.596200 -0.512500 -0.618000 26.72780 1 MTRIX3 2 0.753900 0.622100 0.211400 -24.22900 1